A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

a0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

a1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

AbsoluteColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

AbsoluteColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation

accept(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod

accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod

accepts(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns true if the slot can carry the provided data.

accepts(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns true if the slot can carry the provided data.

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ExpressionTesterMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

ActivateUpdateSiteRun - Class in org.hkijena.jipipe.ui.ijupdater

ActivateUpdateSiteRun(FilesCollection, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

add(JIPipeProject, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Adds an JIPipeExportedDataTable

add(JIPipeProject, JIPipeDataSlot, JIPipeExportedDataTable) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

Adds an JIPipeExportedDataTable

add(JIPipeParameterCollection, String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Adds a new JIPipeParameterCollection into this collection.

add(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

Adds the value to all components

add(Point) - Method in class org.hkijena.jipipe.utils.PointRange

Adds the point's x and y coordinates to all points

ADD_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert any input data type into their respective mask data type

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

Adds a listener for when the path property changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField

Adds a listener for when the search text changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

Adds a listener for when the search text changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor

Adds a listener for when the path property changes

addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

Adds a listener for when the search text changes

addAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Adds a new node type of specified type

AddAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

AddAlgorithmSlotPanel(JIPipeGraphNode, JIPipeSlotType, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

addAnnotationColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Adds a new column that contains annotation data and returns its index- If the column already exists, its index is returned.

AddAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

AddAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

Creates a new instance

AddAnnotationColumnsAlgorithm(AddAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

Creates a copy

addAnnotationIfEnabled(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Adds the annotation with given value of the parameter is enabled

addAnnotationIfEnabled(Collection<JIPipeAnnotation>, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Adds the annotation with given value of the parameter is enabled

addAnnotationIfEnabled(Collection<JIPipeAnnotation>, Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Adds the annotation with given value of the parameter is enabled

addAnnotationToAllData(JIPipeAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds an annotation to all existing data

addButton(String, ActionListener) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addChild(String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

addColumn() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Adds a new column

addColumn(ParameterTable.ParameterColumn, Object) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Adds a new column to the table

addColumn(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a column with the given name.

addColumn(String, TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a column with the given name.

addColumn(Component) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel

Adds an additional component on the right hand side

addColumn(Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

Adds an additional component on the right hand side

addColumns(Collection<ResultsTableData>, boolean, TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds columns from another table

addCompartment(String) - Method in class org.hkijena.jipipe.api.JIPipeProject

Adds a new project compartment

addCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Adds an existing compartment instance

AddCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

AddCompartmentGraphHistorySnapshot(JIPipeProject, String) - Constructor for class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

addContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds a new element into the group.

addContent(Collection<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds multiple elements.

addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Add this theme's custom entries to the defaults table.

addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Add this theme's custom entries to the defaults table.

addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Add this theme's custom entries to the defaults table.

addData(JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds a data row

addData(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds a data row

addData(JIPipeDataSlot, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Copies the source slot into this slot.

addData(JIPipeVirtualData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Adds data as virtual data reference

addData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds the data row of a given slot.

addData(JIPipeDataSlot, Collection<Integer>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds the data row of a given slot.

AddDynamicParameterPanel - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

AddDynamicParameterPanel(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

addEntry(UserFriendlyErrorUI.Entry) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds an entry to the UI

addEscapeListener(JDialog) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a JDialog close when the escape key is hit

addFillerGridBagComponent(Container, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Equivalent of Box.verticalGlue() for GridBagLayout

addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Adds an annotation to the annotation list

addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds an annotation to the annotation list

addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Adds annotations to the global annotation storage of this interface.

addGlobalAnnotations(Map<String, String>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds annotations to the global annotation storage of this interface.

addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Adds annotations to the global annotation storage of this interface.

addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a group header

addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a group header

addGroups(Collection<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Adds multiple groups

addInputSlot(String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Adds a new input slot

addInputSlot(String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an input slot

addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

AdditionFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

AdditionFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel

addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor

addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

addMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

addMessage(MessagePanel.MessageType, String, JButton) - Method in class org.hkijena.jipipe.ui.components.MessagePanel

addNameToColumnIdentifiers(DefaultTableModel, String) - Static method in class org.hkijena.jipipe.utils.TableUtils

Adds a name to columns

addNewGroup() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Adds a new empty group

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

Adds a new instance of the content class Override this method for types that cannot be default-constructed

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongList

addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringList

AddNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

AddNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

AddNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around ImageProcessor

AddNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

Instantiates a new node type.

AddNoise2DAlgorithm(AddNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

Instantiates a new node type.

addNumericColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a string column with the given name.

addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(String, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(String, JIPipeData, List<JIPipeAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point

addOutputSlot(String, Class<? extends JIPipeData>, String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Adds a new input slot

addOutputSlot(String, Class<? extends JIPipeData>, String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an output slot

addOutputSlot(String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds an output slot

addParameter(JIPipeMutableParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Adds a new parameter.

addParameter(String, Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Adds a new parameter

addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Adds an existing popup menu to a button

addPopupMenuToComponent(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds a popup menu to a button.

addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds an existing popup menu to a button

addProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

addRecentJsonExtension(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

Adds a JSON extension file to the list of recent JSON extensions

addRecentProject(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

Adds a project file to the list of recent projects

addReloadablePopupMenuToComponent(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils

Adds an existing popup menu to a button Adds a function that is run before the popup is shown

AddROIToActiveJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display

AddROIToActiveJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

AddROIToJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display

AddROIToJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

addRow() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Adds a new row

addRow(List<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Adds a row with raw values.

addRow() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a new empty row

addRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a new row

addRows(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds multiple rows

addRows(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Merges another results table into this one

addSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Adds a new series into this plot

addSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Adds a new series

addSingletonTab(String, String, Icon, Component, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a tab that can be silently closed and brought up again

addSingletonTab(String, String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a tab that can be silently closed and brought up again

addSlide(Component, String) - Method in class org.hkijena.jipipe.utils.DotSlideshow

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Adds a slots

addSlot(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Adds a slot

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

addSnapshotBefore(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Adds a snapshot into the stack

addStringColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds a string column with the given name.

addTab(String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a new tab

addTab(String, Icon, Component, DocumentTabPane.CloseMode) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Adds a new tab

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

addText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

addTo(JIPipeProject, String) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Adds the compartment to a project as the specified compartment name

addToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a component to the form

addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a component to the form

addToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component to the form

addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component to the form

addToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

addToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

addToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

addToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

addToRoiManager(RoiManager) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Adds the ROI to an existing ROI manager instance

addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Adds an algorithm to the selection

addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Adds an algorithm to the selection

addToTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Adds the table to an existing table

addUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

addVerticalGlue() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a component that acts as Box.verticalGlue()

addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a vertical glue component

addVerticalGlue() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component that acts as Box.verticalGlue()

addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a vertical glue component

addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Adds a component.

addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel

Adds a component.

adjustmentValueChanged(AdjustmentEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

AlgorithmBackup(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

AlgorithmDeselectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

AlgorithmEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI.AlgorithmEvent

Creates a new event

AlgorithmFinderSuccessEvent - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

Generated when the algorithm finder successfully found a connection

AlgorithmFinderSuccessEvent(JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent

AlgorithmGraphCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

AlgorithmGraphCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

AlgorithmGraphPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

AlgorithmGraphPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

AlgorithmSelectedEvent(JIPipeNodeUI, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectedEvent

AlgorithmSelectionChangedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent

AlgorithmUIActionRequestedEvent(JIPipeNodeUI, Object) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent

Initializes a new instance

ALL_DESCRIPTIONS - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

AllCacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data

AllCacheToNonVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun

AllCacheToVirtualRun - Class in org.hkijena.jipipe.ui.data

AllCacheToVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun

ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

ALLOWED_PARAMETER_TYPES - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

allowOutputSlotInheritance(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Enables/disables if slot inheritance is allowed

allowsInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

allowsInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

allowsOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

allowsOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

Anchor - Enum in org.hkijena.jipipe.extensions.parameters.roi

An anchor

AnchorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for Margin

AnchorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

AnnotateByExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

AnnotateByExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

AnnotateByExpression(AnnotateByExpression) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

Copies the algorithm

AnnotateWithAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations

AnnotateWithAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

Creates a new instance

AnnotateWithAnnotationTable(AnnotateWithAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

Creates a copy

AnnotateWithDataString - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Generates annotations from filenames

AnnotateWithDataString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

New instance

AnnotateWithDataString(AnnotateWithDataString) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

Copies the algorithm

AnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

An expression that is used to generate annotations for data

AnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

AnnotationGeneratorExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

AnnotationGeneratorExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

AnnotationGeneratorExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

AnnotationGeneratorExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpressionVariableSource

annotationListToMap(Collection<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts a set of annotations to a map

annotationListToPython(Collection<JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts a list of annotations into a Python dictionary

annotationMapToPython(Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts a map of annotations into a Python dictionary

AnnotationQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

An expression that is used to query annotations

AnnotationQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

AnnotationQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

AnnotationQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

AnnotationQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

AnnotationQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpressionVariableSource

AnnotationsExtension - Class in org.hkijena.jipipe.extensions.annotation

Extension that provides data types and algorithms to modify data annotations

AnnotationsExtension() - Constructor for class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

AnnotationsNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

AnnotationsNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

AnnotationTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes

A special kind of ResultsTableData that stores annotation columns.

AnnotationTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

AnnotationTableFromFile - Class in org.hkijena.jipipe.extensions.annotation.datasources

Imports AnnotationTableData from a file

AnnotationTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

AnnotationTableFromFile(AnnotationTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

Copies the algorithm

AnnotationTableToPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

AnnotationTableToPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

Instantiates the algorithm

AnnotationTableToPaths(AnnotationTableToPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

Copies the algorithm

AnnotationToPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

AnnotationToPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

Instantiates the algorithm

AnnotationToPath(AnnotationToPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

Copies the algorithm

annotationType() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

AppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

AppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

Instantiates a new node type.

AppendRectangularRoiAlgorithm(AppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

Instantiates a new node type.

apply(double) - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Generates a color according to the color map

apply(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryToStringFunction

apply(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

apply(Integer) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

apply(Rectangle) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

Generates the rectangle defined by the definition.

apply(Collection<Boolean>) - Method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Apply the logical operation for the items

apply(TableColumn) - Method in interface org.hkijena.jipipe.extensions.tables.ColumnOperation

Applies the operation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation

apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation

applyCalibration(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

applyCalibration(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

applyCalibrationTo(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

ApplyDistanceTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around EDM

ApplyDistanceTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

Instantiates a new node type.

ApplyDistanceTransform2DAlgorithm(ApplyDistanceTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

Instantiates a new node type.

ApplyExpressionPerRowAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

ApplyExpressionPerRowAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm

ApplyExpressionPerRowAlgorithm(ApplyExpressionPerRowAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm

applyInheritanceConversion(JIPipeDataSlotInfo, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Applies inheritance conversion.

applyLUT(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

applyLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

ApplyMath2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ApplyMath2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

Instantiates a new node type.

ApplyMath2DAlgorithm(ApplyMath2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

Instantiates a new node type.

ApplyMath2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available transformation functions

ApplyMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ApplyMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

Instantiates a new node type.

ApplyMathExpression2DAlgorithm(ApplyMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

Instantiates a new node type.

applyOperation(List<ResultsTableData.Index>, ConvertingColumnOperation) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Applies an operation to the selected cells

ApplyRun - Class in org.hkijena.jipipe.ui.ijupdater

ApplyRun(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ApplyRun

applyThemeToCodeEditor(RSyntaxTextArea) - Static method in class org.hkijena.jipipe.utils.UIUtils

ApplyTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ApplyTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

Instantiates a new node type.

ApplyTransform2DAlgorithm(ApplyTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

Instantiates a new node type.

ApplyTransform2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available transformation functions

applyUpdates(FilesCollection) - Static method in class org.hkijena.ijupdatercli.Main

applyVirtualState(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

If virtual, put all data into the virtual storage If not, fetch all virtual data from storage This function reacts to the virtual mode setting in VirtualDataSettings and will refuse to make data virtual

ArcusCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

ArcusCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation

ArcusSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

ArcusSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation

ArcusTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

ArcusTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation

ArrangeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ChannelArranger

ArrangeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

Instantiates a new node type.

ArrangeChannelsAlgorithm(ArrangeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

Creates a copy

ArrowLessScrollBarUI - Class in org.hkijena.jipipe.installer.linux.ui.utils

ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI

ArrowLessScrollBarUI - Class in org.hkijena.jipipe.ui.theme

ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI

askOpenInCurrentWindow(Component, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Asks the user how to open a project: In the current window or a new window

AssembleExtractedROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

AssembleExtractedROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

assignButtonMenu - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

assignData(String, TableColumn) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Assigns data to a column

assignDataStoragePaths() - Method in class org.hkijena.jipipe.api.JIPipeRun

Iterates through output slots and assigns the data storage paths

attach(Class<?>, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Attaches an object as the specified type

attach(Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Attaches the object with its class as key

autoClean(boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Safely removes cache entries that are not accessible anymore (e.g. an algorithm was removed from the graph; or states where the slots do not exist anymore)

autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

autoExpandLeftTop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

autoLayout() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Applies a full auto-layout method

autoLayoutAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Auto-layouts all UIs

autoPlaceCloseToCursor(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

autoSave(JIPipeProjectWindow) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

autoSaveAll() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

AutoSaveSettings - Class in org.hkijena.jipipe.extensions.settings

AutoSaveSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

autoSizeColumns() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Auto-sizes all columns

AutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segmenter node that thresholds via an auto threshold

AutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

AutoThreshold2DAlgorithm(AutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

Copies the algorithm

AVICompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util

Wrapper around AVI_Writer compression

B

b0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

b1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

BackgroundPanel - Class in org.hkijena.jipipe.ui.components

BackgroundPanel(BufferedImage, boolean) - Constructor for class org.hkijena.jipipe.ui.components.BackgroundPanel

BarBoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarBoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

Creates a new instance

BarBoxAndWhiskerCategoryPlotData(BarBoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

Creates a copy

BarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

Creates a new instance

BarCategoryPlotData(BarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

Creates a copy

BarStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

BarStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

Creates a new instance

BarStatisticalCategoryPlotData(BarStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

Creates a copy

beginModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Halts all ParameterStructureChangedEvent until endModificationBlock() is called.

BioFormatsExporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

BioFormatsExporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

BioFormatsExporter(BioFormatsExporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

BioFormatsImporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

BioFormats importer wrapper

BioFormatsImporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

BioFormatsImporter(BioFormatsImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

Copies the algorithm

bold - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

BooleanFalseConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants

BooleanFalseConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.BooleanFalseConstant

BooleanParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter editor for boolean data

BooleanParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

BooleanParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Boolean

BooleanParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

BooleanPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Boolean

BooleanPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

BooleanTrueConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants

BooleanTrueConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.BooleanTrueConstant

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

BoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for box and whisker category plots category plots.

BoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

Creates a new instance

BoxAndWhiskerCategoryPlotData(BoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

Creates a copy

BoxFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

BoxFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

Instantiates a new node type.

BoxFilter2DAlgorithm(BoxFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

Instantiates a new node type.

BoxFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

BoxFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

Instantiates a new node type.

BoxFilter3DAlgorithm(BoxFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

Instantiates a new node type.

BrightSpotsSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Applies Bright spots segmentation

BrightSpotsSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

BrightSpotsSegmentation2DAlgorithm(BrightSpotsSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

Copies the algorithm

build() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

build() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

build() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Returns the finished object

builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

builder() - Static method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

Creates a new builder

Builder() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

buildFor(Path, StaticVariableSet<Object>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

buildSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Generates a series

buildVariablesSet(ImagePlus, StaticVariableSet<Object>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource

Builds the proper variable set for an image

BusyCursor - Class in org.hkijena.jipipe.utils

A cursor for a component to indicate that some process is running

BusyCursor(Component) - Constructor for class org.hkijena.jipipe.utils.BusyCursor

ByteParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Byte

ByteParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

BytePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Byte

BytePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

ByteRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Byte

ByteRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ByteRangeParameterGenerator

Creates a new instance

C

CacheAwareImagePlusDataViewerPanel - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display

CacheAwareImagePlusDataViewerPanel(JIPipeWorkbench, JIPipeCacheSlotDataSource) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel

CacheAwareOpenResultsTableInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.tables.display

CacheAwareOpenResultsTableInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

CacheAwareTableEditor - Class in org.hkijena.jipipe.extensions.tables.display

CacheAwareTableEditor(JIPipeWorkbench, JIPipeCacheSlotDataSource) - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor

CacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data

CacheToNonVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun

CacheToVirtualRun - Class in org.hkijena.jipipe.ui.data

CacheToVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToVirtualRun

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Calculates the size in grid coordinates

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Calculates the size in grid coordinates

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

calculateMaxTabHeight(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

calibrate(ImagePlus, ImageJCalibrationMode, double, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Calibrates the image.

canAddInputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canAddInputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canAddOutputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canAddOutputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canAutoPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns true if the algorithm can automatically apply pass-through This is only possible if there is at most one input and at most one output.

cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Cancels a runnable

cancel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Cancels a runnable

cancel(boolean) - Method in class org.hkijena.jipipe.utils.InstantFuture

canConnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Slow implementation of connection checking that tests for graph cycles

canConnectFast(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Fast implementation of connection checking without copying the graph

canConvertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Returns true if this adapter can convert to the specified JIPipe data type

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Returns true if this adapter can convert to the specified ImageJ data type

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns if an input slot with specified type can be created

canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns if an output slot with specified type can be created

canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canExtract() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

canExtract() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if the node can be extracted (copied) from the graph

canModifyInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canModifyInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canModifyOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

canModifyOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

canPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns true if the algorithm can apply pass-through.

canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

canPassThrough() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

canRegister() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

canRegister() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask

Returns true if the registration can be done This function should fail as fast as possible

canRegister() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

canShow(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation

Checks if the import is possible

canShow(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

canUserDelete(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the user can delete the algorithm

canUserDelete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if a user can delete this algorithm

canUserDisconnect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the user can disconnect the slots

CanvasEqualizer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

CanvasEqualizer() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

CanvasEqualizer(CanvasEqualizer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

CategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for category plots.

CategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a new instance

CategoryPlotData(CategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a copy

CeilingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

CeilingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation

center - Variable in class org.hkijena.jipipe.utils.PointRange

centerImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

changed(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener

All-in-one event for insertion, removal, change

changed(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

All-in-one event for insertion, removal, change

changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener

changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

ChangeRoiPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ChangeRoiPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

Instantiates a new node type.

ChangeRoiPropertiesAlgorithm(ChangeRoiPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

Instantiates a new node type.

ChangeRoiPropertiesFromAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

Instantiates a new node type.

ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

Instantiates a new node type.

channelsToRGB(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Converted a 3-channel image into RGB (reducing the dimensionality)

CheckBoxIcon - Class in org.hkijena.jipipe.installer.linux.ui.utils

Taken from MetalIconFactory

CheckBoxIcon() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

CheckBoxIcon - Class in org.hkijena.jipipe.utils

Taken from MetalIconFactory

CheckBoxIcon(Color) - Constructor for class org.hkijena.jipipe.utils.CheckBoxIcon

checkExtensionDependencies(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

checkIfWithin(Object, double, double, double, boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the value is not within the limits

checkNonEmpty(String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the string value is null or empty

checkNonNull(Object, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports as invalid if the value is null

checkScriptParametersValidity(JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils

checkScriptValidity(String, JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils

checkSyntax(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

Checks the syntax of an expression.

checkUpdateSites(JIPipeRegistryIssues, List<JIPipeDependency>, Progress) - Method in class org.hkijena.jipipe.JIPipe

Checks the update sites of all extensions and stores the results in the issues

choosePath() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

Opens the file chooser

choosePath() - Method in class org.hkijena.jipipe.ui.components.PathEditor

Opens the file chooser

CLAHEContrastEnhancer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Applies CLAHE image enhancing

CLAHEContrastEnhancer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

CLAHEContrastEnhancer(CLAHEContrastEnhancer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

Copies the algorithm

ClampNegativeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a min(0, x) function

ClampNegativeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation

ClampPositiveColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a max(0, x) function

ClampPositiveColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation

cleanupGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

Re-assigns graph node Ids based on their name

cleanupIds() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Re-assigns new Ids to the all nodes

clear(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes an algorithm from the cache

clear(JIPipeGraphNode, JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes an algorithm from the cache

clear() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Removes everything from the cache

clear() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Clears the report

clear() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Clears this graph

clear() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Removes all parameters

clear() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Clears the table

clear() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Removes all components

clear() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Removes all components

clear() - Method in class org.hkijena.jipipe.ui.components.MessagePanel

clearData() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Removes all data from this slot

clearInputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes all input slots

clearLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Removes all location information added via setLocationWithin()

clearLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

clearOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes all output slots

clearSearch() - Method in class org.hkijena.jipipe.ui.components.SearchBox

Clears the search field

clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Clears the list of selected algorithms

clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Clears the algorithm selection

clearSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Removes all series

clearSlotData() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Clears all data slots

Clij2Absolute - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Absolute

Clij2Absolute(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

Creates a new instance

Clij2Absolute(Clij2Absolute) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

Creates a copy

Clij2AbsoluteDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AbsoluteDifference

Clij2AbsoluteDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

Creates a new instance

Clij2AbsoluteDifference(Clij2AbsoluteDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

Creates a copy

Clij2AddImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImageAndScalar

Clij2AddImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

Creates a new instance

Clij2AddImageAndScalar(Clij2AddImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

Creates a copy

Clij2AddImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImages

Clij2AddImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

Creates a new instance

Clij2AddImages(Clij2AddImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

Creates a copy

Clij2AddImagesWeighted - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AddImagesWeighted

Clij2AddImagesWeighted(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

Creates a new instance

Clij2AddImagesWeighted(Clij2AddImagesWeighted) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

Creates a copy

Clij2AdjacencyMatrixToTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AdjacencyMatrixToTouchMatrix

Clij2AdjacencyMatrixToTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

Creates a new instance

Clij2AdjacencyMatrixToTouchMatrix(Clij2AdjacencyMatrixToTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

Creates a copy

Clij2AffineTransform2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AffineTransform2D

Clij2AffineTransform2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

Creates a new instance

Clij2AffineTransform2d(Clij2AffineTransform2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

Creates a copy

Clij2AffineTransform3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AffineTransform3D

Clij2AffineTransform3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

Creates a new instance

Clij2AffineTransform3d(Clij2AffineTransform3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

Creates a copy

Clij2ApplyVectorField2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ApplyVectorField2D

Clij2ApplyVectorField2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

Creates a new instance

Clij2ApplyVectorField2d(Clij2ApplyVectorField2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

Creates a copy

Clij2ApplyVectorField3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ApplyVectorField3D

Clij2ApplyVectorField3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

Creates a new instance

Clij2ApplyVectorField3d(Clij2ApplyVectorField3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

Creates a copy

Clij2ArgMaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ArgMaximumZProjection

Clij2ArgMaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

Creates a new instance

Clij2ArgMaximumZProjection(Clij2ArgMaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

Creates a copy

Clij2AutomaticThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AutomaticThreshold

Clij2AutomaticThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

Creates a new instance

Clij2AutomaticThreshold(Clij2AutomaticThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

Creates a copy

Clij2AverageDistanceOfNClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfNClosestPoints

Clij2AverageDistanceOfNClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

Creates a new instance

Clij2AverageDistanceOfNClosestPoints(Clij2AverageDistanceOfNClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

Creates a copy

Clij2AverageDistanceOfNFarOffPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfNFarOffPoints

Clij2AverageDistanceOfNFarOffPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

Creates a new instance

Clij2AverageDistanceOfNFarOffPoints(Clij2AverageDistanceOfNFarOffPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

Creates a copy

Clij2AverageDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from AverageDistanceOfTouchingNeighbors

Clij2AverageDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

Creates a new instance

Clij2AverageDistanceOfTouchingNeighbors(Clij2AverageDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

Creates a copy

Clij2BinaryAnd - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryAnd

Clij2BinaryAnd(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

Creates a new instance

Clij2BinaryAnd(Clij2BinaryAnd) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

Creates a copy

Clij2BinaryEdgeDetection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryEdgeDetection

Clij2BinaryEdgeDetection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

Creates a new instance

Clij2BinaryEdgeDetection(Clij2BinaryEdgeDetection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

Creates a copy

Clij2BinaryFillHoles - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryFillHoles

Clij2BinaryFillHoles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

Creates a new instance

Clij2BinaryFillHoles(Clij2BinaryFillHoles) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

Creates a copy

Clij2BinaryNot - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryNot

Clij2BinaryNot(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

Creates a new instance

Clij2BinaryNot(Clij2BinaryNot) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

Creates a copy

Clij2BinaryOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryOr

Clij2BinaryOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

Creates a new instance

Clij2BinaryOr(Clij2BinaryOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

Creates a copy

Clij2BinarySubtract - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinarySubtract

Clij2BinarySubtract(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

Creates a new instance

Clij2BinarySubtract(Clij2BinarySubtract) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

Creates a copy

Clij2BinaryXOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BinaryXOr

Clij2BinaryXOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

Creates a new instance

Clij2BinaryXOr(Clij2BinaryXOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

Creates a copy

Clij2BottomHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BottomHatBox

Clij2BottomHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

Creates a new instance

Clij2BottomHatBox(Clij2BottomHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

Creates a copy

Clij2BottomHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from BottomHatSphere

Clij2BottomHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

Creates a new instance

Clij2BottomHatSphere(Clij2BottomHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

Creates a copy

Clij2CentroidsOfLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CentroidsOfLabels

Clij2CentroidsOfLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

Creates a new instance

Clij2CentroidsOfLabels(Clij2CentroidsOfLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

Creates a copy

Clij2CloseIndexGapsInLabelMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CloseIndexGapsInLabelMap

Clij2CloseIndexGapsInLabelMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

Creates a new instance

Clij2CloseIndexGapsInLabelMap(Clij2CloseIndexGapsInLabelMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

Creates a copy

Clij2ClosingBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ClosingBox

Clij2ClosingBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

Creates a new instance

Clij2ClosingBox(Clij2ClosingBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

Creates a copy

Clij2ClosingDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ClosingDiamond

Clij2ClosingDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

Creates a new instance

Clij2ClosingDiamond(Clij2ClosingDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

Creates a copy

Clij2CombineHorizontally - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CombineHorizontally

Clij2CombineHorizontally(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

Creates a new instance

Clij2CombineHorizontally(Clij2CombineHorizontally) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

Creates a copy

Clij2CombineVertically - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CombineVertically

Clij2CombineVertically(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

Creates a new instance

Clij2CombineVertically(Clij2CombineVertically) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

Creates a copy

Clij2ConcatenateStacks - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ConcatenateStacks

Clij2ConcatenateStacks(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

Creates a new instance

Clij2ConcatenateStacks(Clij2ConcatenateStacks) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

Creates a copy

Clij2Convolve - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Convolve

Clij2Convolve(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

Creates a new instance

Clij2Convolve(Clij2Convolve) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

Creates a copy

Clij2Copy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Copy

Clij2Copy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

Creates a new instance

Clij2Copy(Clij2Copy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

Creates a copy

Clij2CopySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CopySlice

Clij2CopySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

Creates a new instance

Clij2CopySlice(Clij2CopySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

Creates a copy

Clij2CountNonZeroPixels2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroPixels2DSphere

Clij2CountNonZeroPixels2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

Creates a new instance

Clij2CountNonZeroPixels2dSphere(Clij2CountNonZeroPixels2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

Creates a copy

Clij2CountNonZeroPixelsSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroPixelsSliceBySliceSphere

Clij2CountNonZeroPixelsSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

Creates a new instance

Clij2CountNonZeroPixelsSliceBySliceSphere(Clij2CountNonZeroPixelsSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

Creates a copy

Clij2CountNonZeroVoxels3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountNonZeroVoxels3DSphere

Clij2CountNonZeroVoxels3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

Creates a new instance

Clij2CountNonZeroVoxels3dSphere(Clij2CountNonZeroVoxels3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

Creates a copy

Clij2CountTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from CountTouchingNeighbors

Clij2CountTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

Creates a new instance

Clij2CountTouchingNeighbors(Clij2CountTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

Creates a copy

Clij2Crop2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Crop2D

Clij2Crop2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

Creates a new instance

Clij2Crop2d(Clij2Crop2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

Creates a copy

Clij2Crop3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Crop3D

Clij2Crop3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

Creates a new instance

Clij2Crop3d(Clij2Crop3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

Creates a copy

Clij2DepthColorProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DepthColorProjection

Clij2DepthColorProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

Creates a new instance

Clij2DepthColorProjection(Clij2DepthColorProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

Creates a copy

Clij2DetectLabelEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectLabelEdges

Clij2DetectLabelEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

Creates a new instance

Clij2DetectLabelEdges(Clij2DetectLabelEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

Creates a copy

Clij2DetectMaximaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectMaximaSliceBySliceBox

Clij2DetectMaximaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

Creates a new instance

Clij2DetectMaximaSliceBySliceBox(Clij2DetectMaximaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

Creates a copy

Clij2DetectMinimaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DetectMinimaSliceBySliceBox

Clij2DetectMinimaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

Creates a new instance

Clij2DetectMinimaSliceBySliceBox(Clij2DetectMinimaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

Creates a copy

Clij2DifferenceOfGaussian2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DifferenceOfGaussian2D

Clij2DifferenceOfGaussian2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

Creates a new instance

Clij2DifferenceOfGaussian2d(Clij2DifferenceOfGaussian2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

Creates a copy

Clij2DifferenceOfGaussian3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DifferenceOfGaussian3D

Clij2DifferenceOfGaussian3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

Creates a new instance

Clij2DifferenceOfGaussian3d(Clij2DifferenceOfGaussian3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

Creates a copy

Clij2DilateBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateBox

Clij2DilateBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

Creates a new instance

Clij2DilateBox(Clij2DilateBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

Creates a copy

Clij2DilateBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateBoxSliceBySlice

Clij2DilateBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

Creates a new instance

Clij2DilateBoxSliceBySlice(Clij2DilateBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

Creates a copy

Clij2DilateSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateSphere

Clij2DilateSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

Creates a new instance

Clij2DilateSphere(Clij2DilateSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

Creates a copy

Clij2DilateSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DilateSphereSliceBySlice

Clij2DilateSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

Creates a new instance

Clij2DilateSphereSliceBySlice(Clij2DilateSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

Creates a copy

Clij2DistanceMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DistanceMap

Clij2DistanceMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

Creates a new instance

Clij2DistanceMap(Clij2DistanceMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

Creates a copy

Clij2DivideImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DivideImages

Clij2DivideImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

Creates a new instance

Clij2DivideImages(Clij2DivideImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

Creates a copy

Clij2DownsampleSliceBySliceHalfMedian - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from DownsampleSliceBySliceHalfMedian

Clij2DownsampleSliceBySliceHalfMedian(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

Creates a new instance

Clij2DownsampleSliceBySliceHalfMedian(Clij2DownsampleSliceBySliceHalfMedian) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

Creates a copy

Clij2EntropyBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EntropyBox

Clij2EntropyBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

Creates a new instance

Clij2EntropyBox(Clij2EntropyBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

Creates a copy

Clij2Equal - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Equal

Clij2Equal(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

Creates a new instance

Clij2Equal(Clij2Equal) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

Creates a copy

Clij2EqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EqualConstant

Clij2EqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

Creates a new instance

Clij2EqualConstant(Clij2EqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

Creates a copy

Clij2EqualizeMeanIntensitiesOfSlices - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from EqualizeMeanIntensitiesOfSlices

Clij2EqualizeMeanIntensitiesOfSlices(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

Creates a new instance

Clij2EqualizeMeanIntensitiesOfSlices(Clij2EqualizeMeanIntensitiesOfSlices) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

Creates a copy

Clij2ErodeBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeBox

Clij2ErodeBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

Creates a new instance

Clij2ErodeBox(Clij2ErodeBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

Creates a copy

Clij2ErodeBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeBoxSliceBySlice

Clij2ErodeBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

Creates a new instance

Clij2ErodeBoxSliceBySlice(Clij2ErodeBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

Creates a copy

Clij2ErodeSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeSphere

Clij2ErodeSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

Creates a new instance

Clij2ErodeSphere(Clij2ErodeSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

Creates a copy

Clij2ErodeSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ErodeSphereSliceBySlice

Clij2ErodeSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

Creates a new instance

Clij2ErodeSphereSliceBySlice(Clij2ErodeSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

Creates a copy

Clij2ExcludeLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabels

Clij2ExcludeLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

Creates a new instance

Clij2ExcludeLabels(Clij2ExcludeLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

Creates a copy

Clij2ExcludeLabelsOnEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsOnEdges

Clij2ExcludeLabelsOnEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

Creates a new instance

Clij2ExcludeLabelsOnEdges(Clij2ExcludeLabelsOnEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

Creates a copy

Clij2ExcludeLabelsOnSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsOnSurface

Clij2ExcludeLabelsOnSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

Creates a new instance

Clij2ExcludeLabelsOnSurface(Clij2ExcludeLabelsOnSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

Creates a copy

Clij2ExcludeLabelsSubSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsSubSurface

Clij2ExcludeLabelsSubSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

Creates a new instance

Clij2ExcludeLabelsSubSurface(Clij2ExcludeLabelsSubSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

Creates a copy

Clij2ExcludeLabelsWithValuesOutOfRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsWithValuesOutOfRange

Clij2ExcludeLabelsWithValuesOutOfRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

Creates a new instance

Clij2ExcludeLabelsWithValuesOutOfRange(Clij2ExcludeLabelsWithValuesOutOfRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

Creates a copy

Clij2ExcludeLabelsWithValuesWithinRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExcludeLabelsWithValuesWithinRange

Clij2ExcludeLabelsWithValuesWithinRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

Creates a new instance

Clij2ExcludeLabelsWithValuesWithinRange(Clij2ExcludeLabelsWithValuesWithinRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

Creates a copy

Clij2ExecuteKernelIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms

Clij2ExecuteKernelIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

Clij2ExecuteKernelIterating(Clij2ExecuteKernelIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

Clij2ExecuteKernelSimpleIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms

Clij2ExecuteKernelSimpleIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

Clij2ExecuteKernelSimpleIterating(Clij2ExecuteKernelSimpleIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

Clij2Exponential - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Exponential

Clij2Exponential(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

Creates a new instance

Clij2Exponential(Clij2Exponential) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

Creates a copy

Clij2ExtendLabelingViaVoronoi - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ExtendLabelingViaVoronoi

Clij2ExtendLabelingViaVoronoi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

Creates a new instance

Clij2ExtendLabelingViaVoronoi(Clij2ExtendLabelingViaVoronoi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

Creates a copy

Clij2FloodFillDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from FloodFillDiamond

Clij2FloodFillDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

Creates a new instance

Clij2FloodFillDiamond(Clij2FloodFillDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

Creates a copy

Clij2GaussianBlur2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GaussianBlur2D

Clij2GaussianBlur2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

Creates a new instance

Clij2GaussianBlur2d(Clij2GaussianBlur2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

Creates a copy

Clij2GaussianBlur3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GaussianBlur3D

Clij2GaussianBlur3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

Creates a new instance

Clij2GaussianBlur3d(Clij2GaussianBlur3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

Creates a copy

Clij2GenerateBinaryOverlapMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateBinaryOverlapMatrix

Clij2GenerateBinaryOverlapMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

Creates a new instance

Clij2GenerateBinaryOverlapMatrix(Clij2GenerateBinaryOverlapMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

Creates a copy

Clij2GenerateDistanceMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateDistanceMatrix

Clij2GenerateDistanceMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

Creates a new instance

Clij2GenerateDistanceMatrix(Clij2GenerateDistanceMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

Creates a copy

Clij2GenerateJaccardIndexMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateJaccardIndexMatrix

Clij2GenerateJaccardIndexMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

Creates a new instance

Clij2GenerateJaccardIndexMatrix(Clij2GenerateJaccardIndexMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

Creates a copy

Clij2GenerateParametricImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateParametricImage

Clij2GenerateParametricImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

Creates a new instance

Clij2GenerateParametricImage(Clij2GenerateParametricImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

Creates a copy

Clij2GenerateParametricImageFromResultsTableColumn - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateParametricImageFromResultsTableColumn

Clij2GenerateParametricImageFromResultsTableColumn(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

Creates a new instance

Clij2GenerateParametricImageFromResultsTableColumn(Clij2GenerateParametricImageFromResultsTableColumn) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

Creates a copy

Clij2GenerateTouchCountMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateTouchCountMatrix

Clij2GenerateTouchCountMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

Creates a new instance

Clij2GenerateTouchCountMatrix(Clij2GenerateTouchCountMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

Creates a copy

Clij2GenerateTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GenerateTouchMatrix

Clij2GenerateTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

Creates a new instance

Clij2GenerateTouchMatrix(Clij2GenerateTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

Creates a copy

Clij2GetJaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetJaccardIndex

Clij2GetJaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

Creates a new instance

Clij2GetJaccardIndex(Clij2GetJaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

Creates a copy

Clij2GetMeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetMeanSquaredError

Clij2GetMeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

Creates a new instance

Clij2GetMeanSquaredError(Clij2GetMeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

Creates a copy

Clij2GetSorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GetSorensenDiceCoefficient

Clij2GetSorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

Creates a new instance

Clij2GetSorensenDiceCoefficient(Clij2GetSorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

Creates a copy

Clij2GradientX - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientX

Clij2GradientX(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

Creates a new instance

Clij2GradientX(Clij2GradientX) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

Creates a copy

Clij2GradientY - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientY

Clij2GradientY(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

Creates a new instance

Clij2GradientY(Clij2GradientY) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

Creates a copy

Clij2GradientZ - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GradientZ

Clij2GradientZ(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

Creates a new instance

Clij2GradientZ(Clij2GradientZ) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

Creates a copy

Clij2Greater - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Greater

Clij2Greater(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

Creates a new instance

Clij2Greater(Clij2Greater) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

Creates a copy

Clij2GreaterConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterConstant

Clij2GreaterConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

Creates a new instance

Clij2GreaterConstant(Clij2GreaterConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

Creates a copy

Clij2GreaterOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterOrEqual

Clij2GreaterOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

Creates a new instance

Clij2GreaterOrEqual(Clij2GreaterOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

Creates a copy

Clij2GreaterOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from GreaterOrEqualConstant

Clij2GreaterOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

Creates a new instance

Clij2GreaterOrEqualConstant(Clij2GreaterOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

Creates a copy

Clij2Histogram - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Histogram

Clij2Histogram(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

Creates a new instance

Clij2Histogram(Clij2Histogram) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

Creates a copy

Clij2ImageToStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ImageToStack

Clij2ImageToStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

Creates a new instance

Clij2ImageToStack(Clij2ImageToStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

Creates a copy

Clij2Invert - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Invert

Clij2Invert(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

Creates a new instance

Clij2Invert(Clij2Invert) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

Creates a copy

Clij2JaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from JaccardIndex

Clij2JaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

Creates a new instance

Clij2JaccardIndex(Clij2JaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

Creates a copy

Clij2LabelCentroidsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelCentroidsToPointList

Clij2LabelCentroidsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

Creates a new instance

Clij2LabelCentroidsToPointList(Clij2LabelCentroidsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

Creates a copy

Clij2LabelledSpotsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelledSpotsToPointList

Clij2LabelledSpotsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

Creates a new instance

Clij2LabelledSpotsToPointList(Clij2LabelledSpotsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

Creates a copy

Clij2LabelSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelSpots

Clij2LabelSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

Creates a new instance

Clij2LabelSpots(Clij2LabelSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

Creates a copy

Clij2LabelToMask - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelToMask

Clij2LabelToMask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

Creates a new instance

Clij2LabelToMask(Clij2LabelToMask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

Creates a copy

Clij2LabelVoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LabelVoronoiOctagon

Clij2LabelVoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

Creates a new instance

Clij2LabelVoronoiOctagon(Clij2LabelVoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

Creates a copy

Clij2LaplaceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LaplaceBox

Clij2LaplaceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

Creates a new instance

Clij2LaplaceBox(Clij2LaplaceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

Creates a copy

Clij2LaplaceDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LaplaceDiamond

Clij2LaplaceDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

Creates a new instance

Clij2LaplaceDiamond(Clij2LaplaceDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

Creates a copy

Clij2LocalThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from LocalThreshold

Clij2LocalThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

Creates a new instance

Clij2LocalThreshold(Clij2LocalThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

Creates a copy

Clij2Logarithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Logarithm

Clij2Logarithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

Creates a new instance

Clij2Logarithm(Clij2Logarithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

Creates a copy

Clij2Mask - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mask

Clij2Mask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

Creates a new instance

Clij2Mask(Clij2Mask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

Creates a copy

Clij2MaskLabel - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaskLabel

Clij2MaskLabel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

Creates a new instance

Clij2MaskLabel(Clij2MaskLabel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

Creates a copy

Clij2MaskStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaskStackWithPlane

Clij2MaskStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

Creates a new instance

Clij2MaskStackWithPlane(Clij2MaskStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

Creates a copy

Clij2Maximum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum2DBox

Clij2Maximum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

Creates a new instance

Clij2Maximum2dBox(Clij2Maximum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

Creates a copy

Clij2Maximum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum2DSphere

Clij2Maximum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

Creates a new instance

Clij2Maximum2dSphere(Clij2Maximum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

Creates a copy

Clij2Maximum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum3DBox

Clij2Maximum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

Creates a new instance

Clij2Maximum3dBox(Clij2Maximum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

Creates a copy

Clij2Maximum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Maximum3DSphere

Clij2Maximum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

Creates a new instance

Clij2Maximum3dSphere(Clij2Maximum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

Creates a copy

Clij2MaximumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumImageAndScalar

Clij2MaximumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

Creates a new instance

Clij2MaximumImageAndScalar(Clij2MaximumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

Creates a copy

Clij2MaximumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumImages

Clij2MaximumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

Creates a new instance

Clij2MaximumImages(Clij2MaximumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

Creates a copy

Clij2MaximumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOctagon

Clij2MaximumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

Creates a new instance

Clij2MaximumOctagon(Clij2MaximumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

Creates a copy

Clij2MaximumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOfMaskedPixels

Clij2MaximumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

Creates a new instance

Clij2MaximumOfMaskedPixels(Clij2MaximumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

Creates a copy

Clij2MaximumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumOfTouchingNeighbors

Clij2MaximumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

Creates a new instance

Clij2MaximumOfTouchingNeighbors(Clij2MaximumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

Creates a copy

Clij2MaximumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumSliceBySliceSphere

Clij2MaximumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

Creates a new instance

Clij2MaximumSliceBySliceSphere(Clij2MaximumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

Creates a copy

Clij2MaximumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumXProjection

Clij2MaximumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

Creates a new instance

Clij2MaximumXProjection(Clij2MaximumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

Creates a copy

Clij2MaximumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumYProjection

Clij2MaximumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

Creates a new instance

Clij2MaximumYProjection(Clij2MaximumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

Creates a copy

Clij2MaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumZProjection

Clij2MaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

Creates a new instance

Clij2MaximumZProjection(Clij2MaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

Creates a copy

Clij2MaximumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MaximumZProjectionBounded

Clij2MaximumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

Creates a new instance

Clij2MaximumZProjectionBounded(Clij2MaximumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

Creates a copy

Clij2Mean2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean2DBox

Clij2Mean2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

Creates a new instance

Clij2Mean2dBox(Clij2Mean2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

Creates a copy

Clij2Mean2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean2DSphere

Clij2Mean2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

Creates a new instance

Clij2Mean2dSphere(Clij2Mean2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

Creates a copy

Clij2Mean3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean3DBox

Clij2Mean3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

Creates a new instance

Clij2Mean3dBox(Clij2Mean3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

Creates a copy

Clij2Mean3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Mean3DSphere

Clij2Mean3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

Creates a new instance

Clij2Mean3dSphere(Clij2Mean3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

Creates a copy

Clij2MeanClosestSpotDistance - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanClosestSpotDistance

Clij2MeanClosestSpotDistance(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

Creates a new instance

Clij2MeanClosestSpotDistance(Clij2MeanClosestSpotDistance) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

Creates a copy

Clij2MeanOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanOfMaskedPixels

Clij2MeanOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

Creates a new instance

Clij2MeanOfMaskedPixels(Clij2MeanOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

Creates a copy

Clij2MeanOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanOfTouchingNeighbors

Clij2MeanOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

Creates a new instance

Clij2MeanOfTouchingNeighbors(Clij2MeanOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

Creates a copy

Clij2MeanSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanSliceBySliceSphere

Clij2MeanSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

Creates a new instance

Clij2MeanSliceBySliceSphere(Clij2MeanSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

Creates a copy

Clij2MeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanSquaredError

Clij2MeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

Creates a new instance

Clij2MeanSquaredError(Clij2MeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

Creates a copy

Clij2MeanXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanXProjection

Clij2MeanXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

Creates a new instance

Clij2MeanXProjection(Clij2MeanXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

Creates a copy

Clij2MeanYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanYProjection

Clij2MeanYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

Creates a new instance

Clij2MeanYProjection(Clij2MeanYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

Creates a copy

Clij2MeanZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanZProjection

Clij2MeanZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

Creates a new instance

Clij2MeanZProjection(Clij2MeanZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

Creates a copy

Clij2MeanZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MeanZProjectionBounded

Clij2MeanZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

Creates a new instance

Clij2MeanZProjectionBounded(Clij2MeanZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

Creates a copy

Clij2Median2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median2DBox

Clij2Median2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

Creates a new instance

Clij2Median2dBox(Clij2Median2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

Creates a copy

Clij2Median2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median2DSphere

Clij2Median2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

Creates a new instance

Clij2Median2dSphere(Clij2Median2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

Creates a copy

Clij2Median3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median3DBox

Clij2Median3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

Creates a new instance

Clij2Median3dBox(Clij2Median3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

Creates a copy

Clij2Median3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Median3DSphere

Clij2Median3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

Creates a new instance

Clij2Median3dSphere(Clij2Median3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

Creates a copy

Clij2MedianOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianOfTouchingNeighbors

Clij2MedianOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

Creates a new instance

Clij2MedianOfTouchingNeighbors(Clij2MedianOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

Creates a copy

Clij2MedianSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianSliceBySliceBox

Clij2MedianSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

Creates a new instance

Clij2MedianSliceBySliceBox(Clij2MedianSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

Creates a copy

Clij2MedianSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianSliceBySliceSphere

Clij2MedianSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

Creates a new instance

Clij2MedianSliceBySliceSphere(Clij2MedianSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

Creates a copy

Clij2MedianZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MedianZProjection

Clij2MedianZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

Creates a new instance

Clij2MedianZProjection(Clij2MedianZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

Creates a copy

Clij2Minimum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum2DBox

Clij2Minimum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

Creates a new instance

Clij2Minimum2dBox(Clij2Minimum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

Creates a copy

Clij2Minimum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum2DSphere

Clij2Minimum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

Creates a new instance

Clij2Minimum2dSphere(Clij2Minimum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

Creates a copy

Clij2Minimum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum3DBox

Clij2Minimum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

Creates a new instance

Clij2Minimum3dBox(Clij2Minimum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

Creates a copy

Clij2Minimum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Minimum3DSphere

Clij2Minimum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

Creates a new instance

Clij2Minimum3dSphere(Clij2Minimum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

Creates a copy

Clij2MinimumDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumDistanceOfTouchingNeighbors

Clij2MinimumDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

Creates a new instance

Clij2MinimumDistanceOfTouchingNeighbors(Clij2MinimumDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

Creates a copy

Clij2MinimumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumImageAndScalar

Clij2MinimumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

Creates a new instance

Clij2MinimumImageAndScalar(Clij2MinimumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

Creates a copy

Clij2MinimumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumImages

Clij2MinimumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

Creates a new instance

Clij2MinimumImages(Clij2MinimumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

Creates a copy

Clij2MinimumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOctagon

Clij2MinimumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

Creates a new instance

Clij2MinimumOctagon(Clij2MinimumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

Creates a copy

Clij2MinimumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOfMaskedPixels

Clij2MinimumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

Creates a new instance

Clij2MinimumOfMaskedPixels(Clij2MinimumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

Creates a copy

Clij2MinimumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumOfTouchingNeighbors

Clij2MinimumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

Creates a new instance

Clij2MinimumOfTouchingNeighbors(Clij2MinimumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

Creates a copy

Clij2MinimumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumSliceBySliceSphere

Clij2MinimumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

Creates a new instance

Clij2MinimumSliceBySliceSphere(Clij2MinimumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

Creates a copy

Clij2MinimumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumXProjection

Clij2MinimumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

Creates a new instance

Clij2MinimumXProjection(Clij2MinimumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

Creates a copy

Clij2MinimumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumYProjection

Clij2MinimumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

Creates a new instance

Clij2MinimumYProjection(Clij2MinimumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

Creates a copy

Clij2MinimumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjection

Clij2MinimumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

Creates a new instance

Clij2MinimumZProjection(Clij2MinimumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

Creates a copy

Clij2MinimumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjectionBounded

Clij2MinimumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

Creates a new instance

Clij2MinimumZProjectionBounded(Clij2MinimumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

Creates a copy

Clij2MinimumZProjectionThresholdedBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MinimumZProjectionThresholdedBounded

Clij2MinimumZProjectionThresholdedBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

Creates a new instance

Clij2MinimumZProjectionThresholdedBounded(Clij2MinimumZProjectionThresholdedBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

Creates a copy

Clij2MultiplyImageAndCoordinate - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageAndCoordinate

Clij2MultiplyImageAndCoordinate(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

Creates a new instance

Clij2MultiplyImageAndCoordinate(Clij2MultiplyImageAndCoordinate) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

Creates a copy

Clij2MultiplyImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageAndScalar

Clij2MultiplyImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

Creates a new instance

Clij2MultiplyImageAndScalar(Clij2MultiplyImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

Creates a copy

Clij2MultiplyImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImages

Clij2MultiplyImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

Creates a new instance

Clij2MultiplyImages(Clij2MultiplyImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

Creates a copy

Clij2MultiplyImageStackWithScalars - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyImageStackWithScalars

Clij2MultiplyImageStackWithScalars(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

Creates a new instance

Clij2MultiplyImageStackWithScalars(Clij2MultiplyImageStackWithScalars) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

Creates a copy

Clij2MultiplyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyMatrix

Clij2MultiplyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

Creates a new instance

Clij2MultiplyMatrix(Clij2MultiplyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

Creates a copy

Clij2MultiplyStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from MultiplyStackWithPlane

Clij2MultiplyStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

Creates a new instance

Clij2MultiplyStackWithPlane(Clij2MultiplyStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

Creates a copy

Clij2NClosestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NClosestDistances

Clij2NClosestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

Creates a new instance

Clij2NClosestDistances(Clij2NClosestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

Creates a copy

Clij2NClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NClosestPoints

Clij2NClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

Creates a new instance

Clij2NClosestPoints(Clij2NClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

Creates a copy

Clij2NeighborsOfNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NeighborsOfNeighbors

Clij2NeighborsOfNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

Creates a new instance

Clij2NeighborsOfNeighbors(Clij2NeighborsOfNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

Creates a copy

Clij2NonzeroMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMaximumBox

Clij2NonzeroMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

Creates a new instance

Clij2NonzeroMaximumBox(Clij2NonzeroMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

Creates a copy

Clij2NonzeroMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMaximumDiamond

Clij2NonzeroMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

Creates a new instance

Clij2NonzeroMaximumDiamond(Clij2NonzeroMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

Creates a copy

Clij2NonzeroMinimumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMinimumBox

Clij2NonzeroMinimumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

Creates a new instance

Clij2NonzeroMinimumBox(Clij2NonzeroMinimumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

Creates a copy

Clij2NonzeroMinimumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NonzeroMinimumDiamond

Clij2NonzeroMinimumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

Creates a new instance

Clij2NonzeroMinimumDiamond(Clij2NonzeroMinimumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

Creates a copy

Clij2NotEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NotEqual

Clij2NotEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

Creates a new instance

Clij2NotEqual(Clij2NotEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

Creates a copy

Clij2NotEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from NotEqualConstant

Clij2NotEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

Creates a new instance

Clij2NotEqualConstant(Clij2NotEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

Creates a copy

Clij2OnlyzeroOverwriteMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumBox

Clij2OnlyzeroOverwriteMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

Creates a new instance

Clij2OnlyzeroOverwriteMaximumBox(Clij2OnlyzeroOverwriteMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

Creates a copy

Clij2OnlyzeroOverwriteMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumDiamond

Clij2OnlyzeroOverwriteMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

Creates a new instance

Clij2OnlyzeroOverwriteMaximumDiamond(Clij2OnlyzeroOverwriteMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

Creates a copy

Clij2OpeningBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OpeningBox

Clij2OpeningBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

Creates a new instance

Clij2OpeningBox(Clij2OpeningBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

Creates a copy

Clij2OpeningDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from OpeningDiamond

Clij2OpeningDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

Creates a new instance

Clij2OpeningDiamond(Clij2OpeningDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

Creates a copy

Clij2Paste2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Paste2D

Clij2Paste2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

Creates a new instance

Clij2Paste2d(Clij2Paste2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

Creates a copy

Clij2Paste3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Paste3D

Clij2Paste3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

Creates a new instance

Clij2Paste3d(Clij2Paste3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

Creates a copy

Clij2PointIndexListToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PointIndexListToMesh

Clij2PointIndexListToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

Creates a new instance

Clij2PointIndexListToMesh(Clij2PointIndexListToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

Creates a copy

Clij2PointlistToLabelledSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PointlistToLabelledSpots

Clij2PointlistToLabelledSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

Creates a new instance

Clij2PointlistToLabelledSpots(Clij2PointlistToLabelledSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

Creates a copy

Clij2Power - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Power

Clij2Power(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

Creates a new instance

Clij2Power(Clij2Power) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

Creates a copy

Clij2PowerImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PowerImages

Clij2PowerImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

Creates a new instance

Clij2PowerImages(Clij2PowerImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

Creates a copy

Clij2PullToResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PullToResultsTable

Clij2PullToResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

Creates a new instance

Clij2PullToResultsTable(Clij2PullToResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

Creates a copy

Clij2PushResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from PushResultsTable

Clij2PushResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

Creates a new instance

Clij2PushResultsTable(Clij2PushResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

Creates a copy

Clij2ReduceStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReduceStack

Clij2ReduceStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

Creates a new instance

Clij2ReduceStack(Clij2ReduceStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

Creates a copy

Clij2ReplaceIntensities - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplaceIntensities

Clij2ReplaceIntensities(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

Creates a new instance

Clij2ReplaceIntensities(Clij2ReplaceIntensities) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

Creates a copy

Clij2ReplaceIntensity - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplaceIntensity

Clij2ReplaceIntensity(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

Creates a new instance

Clij2ReplaceIntensity(Clij2ReplaceIntensity) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

Creates a copy

Clij2ReplacePixelsIfZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ReplacePixelsIfZero

Clij2ReplacePixelsIfZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

Creates a new instance

Clij2ReplacePixelsIfZero(Clij2ReplacePixelsIfZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

Creates a copy

Clij2ResliceBottom - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceBottom

Clij2ResliceBottom(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

Creates a new instance

Clij2ResliceBottom(Clij2ResliceBottom) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

Creates a copy

Clij2ResliceLeft - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceLeft

Clij2ResliceLeft(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

Creates a new instance

Clij2ResliceLeft(Clij2ResliceLeft) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

Creates a copy

Clij2ResliceRadial - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceRadial

Clij2ResliceRadial(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

Creates a new instance

Clij2ResliceRadial(Clij2ResliceRadial) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

Creates a copy

Clij2ResliceRight - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceRight

Clij2ResliceRight(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

Creates a new instance

Clij2ResliceRight(Clij2ResliceRight) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

Creates a copy

Clij2ResliceTop - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ResliceTop

Clij2ResliceTop(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

Creates a new instance

Clij2ResliceTop(Clij2ResliceTop) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

Creates a copy

Clij2RotateClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from RotateClockwise

Clij2RotateClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

Creates a new instance

Clij2RotateClockwise(Clij2RotateClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

Creates a copy

Clij2RotateCounterClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from RotateCounterClockwise

Clij2RotateCounterClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

Creates a new instance

Clij2RotateCounterClockwise(Clij2RotateCounterClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

Creates a copy

Clij2Scale2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Scale2D

Clij2Scale2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

Creates a new instance

Clij2Scale2d(Clij2Scale2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

Creates a copy

Clij2Scale3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Scale3D

Clij2Scale3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

Creates a new instance

Clij2Scale3d(Clij2Scale3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

Creates a copy

Clij2SetNonZeroPixelsToPixelIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SetNonZeroPixelsToPixelIndex

Clij2SetNonZeroPixelsToPixelIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

Creates a new instance

Clij2SetNonZeroPixelsToPixelIndex(Clij2SetNonZeroPixelsToPixelIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

Creates a copy

Clij2ShortestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ShortestDistances

Clij2ShortestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

Creates a new instance

Clij2ShortestDistances(Clij2ShortestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

Creates a copy

Clij2Smaller - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Smaller

Clij2Smaller(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

Creates a new instance

Clij2Smaller(Clij2Smaller) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

Creates a copy

Clij2SmallerConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerConstant

Clij2SmallerConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

Creates a new instance

Clij2SmallerConstant(Clij2SmallerConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

Creates a copy

Clij2SmallerOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerOrEqual

Clij2SmallerOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

Creates a new instance

Clij2SmallerOrEqual(Clij2SmallerOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

Creates a copy

Clij2SmallerOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SmallerOrEqualConstant

Clij2SmallerOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

Creates a new instance

Clij2SmallerOrEqualConstant(Clij2SmallerOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

Creates a copy

Clij2Sobel - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Sobel

Clij2Sobel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

Creates a new instance

Clij2Sobel(Clij2Sobel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

Creates a copy

Clij2SorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SorensenDiceCoefficient

Clij2SorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

Creates a new instance

Clij2SorensenDiceCoefficient(Clij2SorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

Creates a copy

Clij2SpotsToPointList1 - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SpotsToPointList

Clij2SpotsToPointList1(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

Creates a new instance

Clij2SpotsToPointList1(Clij2SpotsToPointList1) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

Creates a copy

Clij2SquaredDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SquaredDifference

Clij2SquaredDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

Creates a new instance

Clij2SquaredDifference(Clij2SquaredDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

Creates a copy

Clij2StandardDeviationOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationOfMaskedPixels

Clij2StandardDeviationOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

Creates a new instance

Clij2StandardDeviationOfMaskedPixels(Clij2StandardDeviationOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

Creates a copy

Clij2StandardDeviationOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationOfTouchingNeighbors

Clij2StandardDeviationOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

Creates a new instance

Clij2StandardDeviationOfTouchingNeighbors(Clij2StandardDeviationOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

Creates a copy

Clij2StandardDeviationZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StandardDeviationZProjection

Clij2StandardDeviationZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

Creates a new instance

Clij2StandardDeviationZProjection(Clij2StandardDeviationZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

Creates a copy

Clij2StatisticsOfBackgroundAndLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfBackgroundAndLabelledPixels

Clij2StatisticsOfBackgroundAndLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

Creates a new instance

Clij2StatisticsOfBackgroundAndLabelledPixels(Clij2StatisticsOfBackgroundAndLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

Creates a copy

Clij2StatisticsOfImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfImage

Clij2StatisticsOfImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

Creates a new instance

Clij2StatisticsOfImage(Clij2StatisticsOfImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

Creates a copy

Clij2StatisticsOfLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from StatisticsOfLabelledPixels

Clij2StatisticsOfLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

Creates a new instance

Clij2StatisticsOfLabelledPixels(Clij2StatisticsOfLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

Creates a copy

Clij2SubtractImageFromScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SubtractImageFromScalar

Clij2SubtractImageFromScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

Creates a new instance

Clij2SubtractImageFromScalar(Clij2SubtractImageFromScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

Creates a copy

Clij2SubtractImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SubtractImages

Clij2SubtractImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

Creates a new instance

Clij2SubtractImages(Clij2SubtractImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

Creates a copy

Clij2SumImageSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumImageSliceBySlice

Clij2SumImageSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

Creates a new instance

Clij2SumImageSliceBySlice(Clij2SumImageSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

Creates a copy

Clij2SumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumXProjection

Clij2SumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

Creates a new instance

Clij2SumXProjection(Clij2SumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

Creates a copy

Clij2SumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumYProjection

Clij2SumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

Creates a new instance

Clij2SumYProjection(Clij2SumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

Creates a copy

Clij2SumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from SumZProjection

Clij2SumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

Creates a new instance

Clij2SumZProjection(Clij2SumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

Creates a copy

Clij2Threshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Threshold

Clij2Threshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

Creates a new instance

Clij2Threshold(Clij2Threshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

Creates a copy

Clij2ThresholdDefault - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdDefault

Clij2ThresholdDefault(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

Creates a new instance

Clij2ThresholdDefault(Clij2ThresholdDefault) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

Creates a copy

Clij2ThresholdHuang - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdHuang

Clij2ThresholdHuang(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

Creates a new instance

Clij2ThresholdHuang(Clij2ThresholdHuang) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

Creates a copy

Clij2ThresholdIjIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIJ_IsoData

Clij2ThresholdIjIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

Creates a new instance

Clij2ThresholdIjIsoData(Clij2ThresholdIjIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

Creates a copy

Clij2ThresholdIntermodes - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIntermodes

Clij2ThresholdIntermodes(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

Creates a new instance

Clij2ThresholdIntermodes(Clij2ThresholdIntermodes) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

Creates a copy

Clij2ThresholdIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdIsoData

Clij2ThresholdIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

Creates a new instance

Clij2ThresholdIsoData(Clij2ThresholdIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

Creates a copy

Clij2ThresholdLi - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdLi

Clij2ThresholdLi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

Creates a new instance

Clij2ThresholdLi(Clij2ThresholdLi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

Creates a copy

Clij2ThresholdMaxEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMaxEntropy

Clij2ThresholdMaxEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

Creates a new instance

Clij2ThresholdMaxEntropy(Clij2ThresholdMaxEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

Creates a copy

Clij2ThresholdMean - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMean

Clij2ThresholdMean(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

Creates a new instance

Clij2ThresholdMean(Clij2ThresholdMean) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

Creates a copy

Clij2ThresholdMinError - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMinError

Clij2ThresholdMinError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

Creates a new instance

Clij2ThresholdMinError(Clij2ThresholdMinError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

Creates a copy

Clij2ThresholdMinimum - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMinimum

Clij2ThresholdMinimum(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

Creates a new instance

Clij2ThresholdMinimum(Clij2ThresholdMinimum) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

Creates a copy

Clij2ThresholdMoments - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdMoments

Clij2ThresholdMoments(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

Creates a new instance

Clij2ThresholdMoments(Clij2ThresholdMoments) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

Creates a copy

Clij2ThresholdOtsu - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdOtsu

Clij2ThresholdOtsu(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

Creates a new instance

Clij2ThresholdOtsu(Clij2ThresholdOtsu) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

Creates a copy

Clij2ThresholdPercentile - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdPercentile

Clij2ThresholdPercentile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

Creates a new instance

Clij2ThresholdPercentile(Clij2ThresholdPercentile) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

Creates a copy

Clij2ThresholdRenyiEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdRenyiEntropy

Clij2ThresholdRenyiEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

Creates a new instance

Clij2ThresholdRenyiEntropy(Clij2ThresholdRenyiEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

Creates a copy

Clij2ThresholdShanbhag - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdShanbhag

Clij2ThresholdShanbhag(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

Creates a new instance

Clij2ThresholdShanbhag(Clij2ThresholdShanbhag) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

Creates a copy

Clij2ThresholdTriangle - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdTriangle

Clij2ThresholdTriangle(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

Creates a new instance

Clij2ThresholdTriangle(Clij2ThresholdTriangle) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

Creates a copy

Clij2ThresholdYen - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from ThresholdYen

Clij2ThresholdYen(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

Creates a new instance

Clij2ThresholdYen(Clij2ThresholdYen) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

Creates a copy

Clij2TopHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TopHatBox

Clij2TopHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

Creates a new instance

Clij2TopHatBox(Clij2TopHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

Creates a copy

Clij2TopHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TopHatSphere

Clij2TopHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

Creates a new instance

Clij2TopHatSphere(Clij2TopHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

Creates a copy

Clij2TouchMatrixToAdjacencyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TouchMatrixToAdjacencyMatrix

Clij2TouchMatrixToAdjacencyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

Creates a new instance

Clij2TouchMatrixToAdjacencyMatrix(Clij2TouchMatrixToAdjacencyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

Creates a copy

Clij2TouchMatrixToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TouchMatrixToMesh

Clij2TouchMatrixToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

Creates a new instance

Clij2TouchMatrixToMesh(Clij2TouchMatrixToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

Creates a copy

Clij2Translate2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Translate2D

Clij2Translate2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

Creates a new instance

Clij2Translate2d(Clij2Translate2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

Creates a copy

Clij2Translate3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Translate3D

Clij2Translate3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

Creates a new instance

Clij2Translate3d(Clij2Translate3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

Creates a copy

Clij2TransposeXy - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeXY

Clij2TransposeXy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

Creates a new instance

Clij2TransposeXy(Clij2TransposeXy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

Creates a copy

Clij2TransposeXz - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeXZ

Clij2TransposeXz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

Creates a new instance

Clij2TransposeXz(Clij2TransposeXz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

Creates a copy

Clij2TransposeYz - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from TransposeYZ

Clij2TransposeYz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

Creates a new instance

Clij2TransposeYz(Clij2TransposeYz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

Creates a copy

Clij2UndefinedToZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from UndefinedToZero

Clij2UndefinedToZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

Creates a new instance

Clij2UndefinedToZero(Clij2UndefinedToZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

Creates a copy

Clij2VarianceOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VarianceOfMaskedPixels

Clij2VarianceOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

Creates a new instance

Clij2VarianceOfMaskedPixels(Clij2VarianceOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

Creates a copy

Clij2VoronoiLabeling - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VoronoiLabeling

Clij2VoronoiLabeling(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

Creates a new instance

Clij2VoronoiLabeling(Clij2VoronoiLabeling) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

Creates a copy

Clij2VoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from VoronoiOctagon

Clij2VoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

Creates a new instance

Clij2VoronoiOctagon(Clij2VoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

Creates a copy

Clij2Watershed - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from Watershed

Clij2Watershed(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

Creates a new instance

Clij2Watershed(Clij2Watershed) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

Creates a copy

Clij2WriteValuesToPositions - Class in org.hkijena.jipipe.extensions.clij2.algorithms

CLIJ2 algorithm ported from WriteValuesToPositions

Clij2WriteValuesToPositions(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

Creates a new instance

Clij2WriteValuesToPositions(Clij2WriteValuesToPositions) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

Creates a copy

CLIJControlPanel - Class in org.hkijena.jipipe.extensions.clij2.ui

Graphical control panel for CLIJ

CLIJControlPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanel

CLIJControlPanelMenuExtension - Class in org.hkijena.jipipe.extensions.clij2.ui

Adds a menu item that allows to control CLIJ

CLIJControlPanelMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanelMenuExtension

Creates a new instance

CLIJExtension - Class in org.hkijena.jipipe.extensions.clij2

Integrates CLIJ

CLIJExtension() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJExtension

CLIJImageData - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Contains a CLIJ image

CLIJImageData(ClearCLBuffer) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Initializes a new instance from an existing buffer

CLIJImageData(ImagePlusData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Initializes an instance by copying data from ImagePlusData

CLIJImageData(CLIJImageData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Makes a copy

CLIJImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Adapter for CLIJImageData

CLIJImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

CLIJImageToImagePlusDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Converter from CLIJImageData to ImagePlusData

CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

CLIJSettings - Class in org.hkijena.jipipe.extensions.clij2

Settings for CLIJ

CLIJSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings

cloneTableModel(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils

Copies a table

close() - Method in class org.hkijena.jipipe.utils.BusyCursor

CloseAllImageJWindowsTool - Class in org.hkijena.jipipe.extensions.tools

CloseAllImageJWindowsTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CloseAllImageJWindowsTool

Creates a new instance

closeAllTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes all tabs

closeMessage() - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

closeTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes the tab.

collapse(IOInterfaceAlgorithm) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Removes the interface and directly connects the inputs and outputs

CollapseIOInterfaceNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

CollapseIOInterfaceNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

COLOR_CONSTANT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

COLOR_FUNCTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

COLOR_MAP - Static variable in class org.hkijena.jipipe.utils.ColorUtils

COLOR_OPERATOR - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

COLOR_SELECTED - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

COLOR_STRING - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

COLOR_UNSELECTED - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

COLOR_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

ColorChooserButton - Class in org.hkijena.jipipe.ui.components

ColorChooserButton() - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton

ColorChooserButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton

ColorDeserializer - Class in org.hkijena.jipipe.extensions.parameters.colors

Deserializer for Color

ColorDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer

ColorIcon - Class in org.hkijena.jipipe.ui.components

Icon that is only one specific color, including border

ColorIcon() - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates a 16x16 black icon

ColorIcon(int, int) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates a black icon

ColorIcon(int, int, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

Creates an icon with black borders

ColorIcon(int, int, Color, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon

ColorMap - Enum in org.hkijena.jipipe.extensions.parameters.colors

All available color maps

ColorMap - Enum in org.hkijena.jipipe.extensions.plots.utils

ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.colors

EnumItemInfo implementation for ColorMap

ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

Creates a new instance

ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.plots.utils

ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo

ColorMapIcon - Class in org.hkijena.jipipe.extensions.parameters.colors

Icon that renders a color map entry

ColorMapIcon() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

Creates a 16x16 black icon

ColorMapIcon(int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

Creates a viridis icon

ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

ColorMapIcon - Class in org.hkijena.jipipe.extensions.plots.utils

ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon

ColorMapSupplier - Class in org.hkijena.jipipe.extensions.plots.utils

Provides a color palette

ColorMapSupplier(Paint[]) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier

ColorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.colors

Parameter editor for String

ColorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

ColorRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ColorRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

Instantiates a new node type.

ColorRoiByStatisticsAlgorithm(ColorRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

Instantiates a new node type.

ColorSerializer - Class in org.hkijena.jipipe.extensions.parameters.colors

Serializer for Color

ColorSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer

colorToHexString(Color) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Converts a color to a Hex string

colorToHexString(Color) - Static method in class org.hkijena.jipipe.utils.ColorUtils

Converts a color to a Hex string

ColorUtils - Class in org.hkijena.jipipe.utils

ColorUtils() - Constructor for class org.hkijena.jipipe.utils.ColorUtils

column - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

ColumnContentType - Enum in org.hkijena.jipipe.extensions.tables

Available column content types

ColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

An operation on a TableColumn

ColumnOperationAdapterFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

An adapter from ColumnOperation to ExpressionFunction.

ColumnOperationAdapterFunction(ColumnOperation, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction

ColumnOperationEntry(String, ColumnOperation, String, String, String) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

Creates a new entry

ColumnsToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

ColumnsToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

ColumnsToAnnotationsAlgorithm(ColumnsToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

CombineChannelsToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

CombineChannelsToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm

CombineChannelsToRGBAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm

combineSlices(Map<ImageSliceIndex, ImageProcessor>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Combines the slices in the map into one image.

compare(Object, Object) - Method in class org.hkijena.jipipe.utils.NaturalOrderComparator

comparePlugins(PluginInfo<?>, PluginInfo<?>) - Static method in class org.hkijena.jipipe.JIPipe

Compares two plugins and sorts them by priority

comparePriority(JIPipeParameterAccess, JIPipeParameterAccess) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Compares the priority

compareTo(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

compareTo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

compareTo(JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

compareTo(JIPipeParameterTypeInfo) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

compareTo(ImageJUtils.GradientStop) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop

compareTo(RankedData<T>) - Method in class org.hkijena.jipipe.utils.RankedData

COMPARTMENT_DEFAULT - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeGraph

CompartmentAddedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent

CompartmentNodeTypeCategory - Class in org.hkijena.jipipe.api.compartments.algorithms

CompartmentNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

CompartmentRemovedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent

CompartmentRenamedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRenamedEvent

composeInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>, Map<JIPipeDataInfo, JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates the composition of two inheritance conversions.

composeRawInheritanceConversions(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates the composition of two inheritance conversions.

CompoundGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CompoundGraphHistorySnapshot(List<JIPipeAlgorithmGraphHistorySnapshot>) - Constructor for class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

ConcatenateByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConcatenateByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

ConcatenateByParameter(ConcatenateByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

Copies the algorithm

ConcatenatePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConcatenatePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

ConcatenatePaths(ConcatenatePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

Copies the algorithm

ConfirmingButton - Class in org.hkijena.jipipe.ui.components

Button that shows a nice confirmation of some action taken

ConfirmingButton() - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

Creates a button

ConfirmingButton(Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(Action) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

ConfirmingButton(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton

confirmResetParameters(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

ConflictDialog - Class in org.hkijena.jipipe.ui.ijupdater

Copy of ConflictDialog because the original one expects an UpdaterFrame

ConflictDialog(Window, String) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

conflictList - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

conflicts - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

connect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Connects an output slot to an input slot.

connect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Connects an output slot to an input slot.

connectCompartments(JIPipeProjectCompartment, JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Connects two compartments

connectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Connects the two slots

CONSTANT_E - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

CONSTANT_FALSE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

CONSTANT_PI - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

CONSTANT_TAU - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

CONSTANT_TRUE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

containsColumn(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

containsColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns true if the column exists

containsEquivalentOf(JIPipeGraphNode, JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if this graph contains an algorithm with the same ID as the foreign algorithm in the foreign graph

containsKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Returns true if there is a parameter with given key

containsNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if this graph contains the algorithm

containsNode(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if the slot is in this graph

containsOnlyRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Returns if this ROI list only contains ROI of given type

ContainsOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

Operator that tests if the left string is contained in the right string

ContainsOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator

ContainsOperator2 - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

Operator that tests if the left string is contained in the right string

ContainsOperator2() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2

ContainsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ContainsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction

context() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

context() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

context() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

ContextAction(Object, Method, URL, JIPipeDocumentation) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

convert(JIPipeData) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

Converts the supported input type to the output type

convert(JIPipeData, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Converts the input data to the output data type

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

convert(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction

convert(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter

ConvertAnnotationTableToAnnotatedTables - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

ConvertAnnotationTableToAnnotatedTables(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

Creates a new instance

ConvertAnnotationTableToAnnotatedTables(ConvertAnnotationTableToAnnotatedTables) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

Creates a copy

ConvertColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

ConvertColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

Creates a new instance

ConvertColumnsAlgorithm(ConvertColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

Creates a copy

ConvertDataToOutputPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ConvertDataToOutputPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

ConvertDataToOutputPath(ConvertDataToOutputPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

Copies the algorithm

ConverterAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

Algorithm that converts any type to any other type

ConverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

convertGlobToRegex(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Converts a standard POSIX Shell globbing pattern into a regular expression pattern.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

Converts an ImagePlus to the color space of this data.

convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

Converts an ImagePlus to the color space of this data.

convertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts an ImageJ data type to its corresponding JIPipe type

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

Converts ImagePlus to an ImagePlusData instance.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

Converts ImagePlus to an ImagePlusData instance.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

Converts ResultsTable to ResultsTableData.

convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

Converts a RoiManager to ROIListData.

ConvertingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

A column operation that returns an output that has the same size as the input

ConvertingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

A parameter that models processing an input column via an conversion function and generating an output column

ConvertingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

ConvertingTableColumnProcessorParameter(ConvertingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

ConvertingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

ConvertingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList

Creates a new instance

ConvertingTableColumnProcessorParameterList(ConvertingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList

Creates a copy

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts a JIPipe data type to its corresponding ImageJ data type

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

convertMergingToSingleDataBatches(List<JIPipeMergingDataBatch>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

Builds a single data batch where each slot only can have one row

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Converts multiple JIPipe data to their corresponding ImageJ data type.

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

ConvertToAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Removes a specified annotation

ConvertToAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

ConvertToAnnotationTable(ConvertToAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

Copies the algorithm

convertToNumericColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts the column into a numeric column.

convertToSameTypeIfNeeded(ImagePlus, ImagePlus, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Converts this image to the same type as the other one if needed

convertToStringColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts the column into a string column.

ConvolveByImage2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Wrapper around Convolver

ConvolveByImage2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm

Instantiates a new node type.

ConvolveByImage2DAlgorithm(ConvolveByImage2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm

Creates a copy

ConvolveByParameter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

Wrapper around Convolver

ConvolveByParameter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

Instantiates a new node type.

ConvolveByParameter2DAlgorithm(ConvolveByParameter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

Creates a copy

CopyContainingFolderDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data

Import operation that copies the containing folder path into the clipboard.

CopyContainingFolderDataImportOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

copyFrom(JIPipeDataByMetadataExporter) - Method in class org.hkijena.jipipe.extensions.settings.DataExporterSettings

Copies parameters into the settings storage

copyMetadata(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Copies additional parameters such as custom names from the other slot

CopyPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

CopyPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

CopyPath(CopyPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

Copies the algorithm

CopyPathDataOperation - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis

CopyPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

copySlotConfiguration(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the slot configuration from the other algorithm to this algorithm Override this method for special configuration cases

copyTo(JIPipeDynamicParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Copies the parameter configuration into the target

CoreExtension - Class in org.hkijena.jipipe.extensions.core

The core extension

CoreExtension() - Constructor for class org.hkijena.jipipe.extensions.core.CoreExtension

CosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

CosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation

countRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Counts all ROIs of given type

createAddSlotButton(JIPipeSlotType) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Function that creates the "Add slot" button

createAnnotation(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Creates a new annotation with the defined name and value

createAnnotation(String[]) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Creates a new annotation with the defined name and value

createAnnotation(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

Creates a new annotation with the defined name and value

CreateArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

CreateArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateArrayFunction

createBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

Creates a backup

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer

createData(Class<T>, Object...) - Static method in class org.hkijena.jipipe.JIPipe

Instantiates a data class with the provided parameters This method is helpful if output data is constructed based on slot types

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

Creates a data set from the current series

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a data set from the current series

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a data set from the current series

createDecreaseButton(int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI

createDecreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI

createDesktopImage() - Static method in class org.hkijena.jipipe.utils.ScreenImage

Convenience method to create a BufferedImage of the desktop

CreateDirectory - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

CreateDirectory(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

CreateDirectory(CreateDirectory) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

Copies the algorithm

createDummyImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates a 2D 8-bit image that covers the region of all ROI

createDummyImageFor(Collection<ROIListData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates a 2D 8-bit black image that covers the region of all provided ROI

createEditorFor(JIPipeWorkbench, JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Creates editor for the parameter

createExporter(JIPipeProjectWorkbench, NodeGroup, String, String) - Static method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

Creates a new exporter tab

createGradientLUT(Color, Color) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Creates an HTML table with an icon and text.

createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Creates an HTML table with an icon and text.

createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Creates an HTML table with an icon and text.

createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Creates an HTML table with an icon and text.

createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for Swing components.

createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for Swing components.

createImage(Component) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage for AWT components.

createImage(Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Create a BufferedImage from a rectangular region on the screen.

createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG

Create a BufferedImage for Swing components.

createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG

Create a BufferedImage for Swing components.

createIncreaseButton(int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI

createIncreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI

createInstance(Context) - Static method in class org.hkijena.jipipe.JIPipe

Helper to create JIPipe from a context

CreateLaunchersTool - Class in org.hkijena.jipipe.extensions.tools

CreateLaunchersTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CreateLaunchersTool

Creates a new instance

createLayoutManager() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

createLUTFromGradient(List<ImageJUtils.GradientStop>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

CreateMapFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

CreateMapFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateMapFunction

createMenuTree(JMenu, Set<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a hierarchy of menus based on the menu paths vector

createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a new entry

createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

createNextButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI

createNode(String, Class<T>) - Static method in class org.hkijena.jipipe.JIPipe

Creates a new node instance from its id

createNode(Class<T>) - Static method in class org.hkijena.jipipe.JIPipe

Creates a new node instance from its class.

createOptionsButton() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

CreatePairArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

CreatePairArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreatePairArrayFunction

createParameters() - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

createPreviousButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI

createProgress() - Static method in class org.hkijena.ijupdatercli.Main

createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Same as createIconTextHTMLTable but the icon is on the right side

createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Same as createIconTextHTMLTable but the icon is on the right side

createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Same as createIconTextHTMLTableElement but the icon is on the right side

createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils

Same as createIconTextHTMLTableElement but the icon is on the right side

createScreenshotPNG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a screenshot of the whole graph compartment

createScreenshotSVG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a screenshot of the whole graph compartment

createStarRatingLabel(String, double, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a read-only "star-rating" label

createToggleButton() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

createToggleButton() - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

createTransferable(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler

createUI(JComponent) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI

createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI

createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI

createUndoSnapshot() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Creates a new 'Undo' point

crop(boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Moves the ROI, so the bounding rectangle is at 0,0

crop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Sets node positions to make the top left to 0, 0

CropToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

CropToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

CropToRoiAlgorithm(CropToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

CSS_RULES - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader

CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI

CSS_RULES_DARK - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader

CustomBoxAndWhiskerRenderer - Class in org.hkijena.jipipe.extensions.plots.datatypes

A box-and-whisker renderer.

CustomBoxAndWhiskerRenderer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Default constructor.

CustomTabbedPaneUI - Class in org.hkijena.jipipe.ui.theme

MetalTabbedPaneUI without the slants

CustomTabbedPaneUI() - Constructor for class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

CustomTabbedPaneUI.TabbedPaneLayout - Class in org.hkijena.jipipe.ui.theme

This class should be treated as a "protected" inner class.

CutCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CutCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot

CutNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

CutNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot

D

DARK_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

DARK_THEME - Static variable in class org.hkijena.jipipe.utils.UIUtils

DarkModernMetalTheme - Class in org.hkijena.jipipe.ui.theme

DarkModernMetalTheme() - Constructor for class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Creates an instance of OceanTheme

DataBatchAssistantUI - Class in org.hkijena.jipipe.ui.batchassistant

A tool that assists the user in configuring batch generation for JIPipeIteratingAlgorithm and JIPipeMergingAlgorithm

DataBatchAssistantUI(JIPipeProjectWorkbench, JIPipeGraphNode, Runnable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings(JIPipeIteratingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

DataBatchGenerationSettings(JIPipeMergingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

DataBatchUI - Class in org.hkijena.jipipe.ui.batchassistant

DataBatchUI(JIPipeProjectWorkbench, JIPipeGraphNode, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchUI

DataConverterEdge() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

DataExporterSettings - Class in org.hkijena.jipipe.extensions.settings

Settings for default data exporters

DataExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DataExporterSettings

DataSlotTableModel(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

Creates a new instance

DataSlotTableModel(JTable, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

Creates a new instance

DataSlotTableUI - Class in org.hkijena.jipipe.ui.batchassistant

UI that displays a JIPipeDataSlot

DataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI

DataSlotTableUI.DataSlotTableModel - Class in org.hkijena.jipipe.ui.batchassistant

Wraps around a JIPipeDataSlot to display a "toString" column

DataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.batchassistant

Renders the column header of DataSlotTableUI.DataSlotTableModel

DataSourceNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

DataSourceNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

DataToPreviewAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

DataToPreviewAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

DataToPreviewAlgorithm(DataToPreviewAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

DataTypeDeselectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

DatatypeRegisteredEvent(String) - Constructor for class org.hkijena.jipipe.JIPipe.DatatypeRegisteredEvent

DataTypeSelectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

deactivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

debug(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

debug(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

DECREASE_DIMENSION_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert higher-dimensional data to a lower-dimensional counterpart. 2D data remains 2D data.

DefaultAlgorithmUIActionRequestedEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent

DefaultCacheDisplaySettings - Class in org.hkijena.jipipe.extensions.settings

A dynamic settings sheet that lets users select the default cache display

DefaultCacheDisplaySettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings

DefaultCacheDisplaySettings(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings

DefaultDataDisplayOperation - Class in org.hkijena.jipipe.extensions.core.data

DefaultDataDisplayOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

DefaultEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Default implementation of EnumItemInfo

DefaultEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

DefaultExpressionEvaluator - Class in org.hkijena.jipipe.extensions.parameters.expressions

Describes basic properties of a ExpressionParameter

DefaultExpressionEvaluator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

DefaultExpressionEvaluatorSyntaxTokenMaker - Class in org.hkijena.jipipe.extensions.parameters.expressions

Generates tokens for an ExpressionEvaluator instance.

DefaultExpressionEvaluatorSyntaxTokenMaker() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker

DefaultExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions

An ExpressionParameter that utilizes the DefaultExpressionEvaluator to generate results

DefaultExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter

DefaultExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter

DefaultExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter

DefaultExpressionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.expressions

DefaultExpressionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI

Creates new instance

DefaultJIPipeInputSlot - Class in org.hkijena.jipipe.api.nodes

Default implementation of JIPipeInputSlot

DefaultJIPipeInputSlot(Class<? extends JIPipeData>, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

DefaultJIPipeOutputSlot - Class in org.hkijena.jipipe.api.nodes

Default implementation of JIPipeOutputSlot

DefaultJIPipeOutputSlot(Class<? extends JIPipeData>, String, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

DefaultResultImporterSettings - Class in org.hkijena.jipipe.extensions.settings

A dynamic settings sheet that lets users select the default importer

DefaultResultImporterSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings

DefaultResultImporterSettings(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings

DefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

DefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

Instantiates a new node type.

DefineRectangularRoiAlgorithm(DefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

Instantiates a new node type.

DefineTablesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

DefineTablesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

DefineTablesAlgorithm(DefineTablesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

Copies the algorithm

DegreeToRadiansColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

DegreeToRadiansColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation

DeleteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

DeleteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

DeleteCompartmentUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DeleteCompartmentUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

DeleteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DeleteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

description() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.JIPipeProject.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Deserializer

deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer

deserializeKey(String, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer

deserializeParametersFromJson(JIPipeParameterCollection, JsonNode, JIPipeValidityReport) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Deserializes parameters from JSON

Deserializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Deserializer

Deserializer() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer

DespeckleFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around RankFilters

DespeckleFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

Instantiates a new node type.

DespeckleFilter2DAlgorithm(DespeckleFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

Instantiates a new node type.

destroy() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Similar to flush(), but only destroys the data.

DIMENSION_OPERATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData

The dimensionality of this data

DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

The dimensionality of this data

disableAutoCalibration() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

DisableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

disableOnNonMatch() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Determines if an item should be disabled or removed if it does not match

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

DisablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

DisableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

DisableVirtualOutputNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

DisableVirtualOutputNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

disconnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Disconnects an input and an output slot

disconnectAll(JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Completely disconnects a slot

disconnectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Disconnects two slots

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

This function should display the data in the GUI.

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataDisplayOperation

Shows the data in the UI

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.strings.StringData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

displayErrors(Exception) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds an exception to the display.

displayErrors(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

Adds a report to the display Does not add the necessary vertical glue.

DisplayRangeCalibrationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

DisplayRangeCalibrationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

DisplayRangeCalibrationAlgorithm(DisplayRangeCalibrationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

dispose() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

dispose() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

DistanceTransformWatershed2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

DistanceTransformWatershed2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

Instantiates a new node type.

DistanceTransformWatershed2DAlgorithm(DistanceTransformWatershed2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

Instantiates a new node type.

DivideByMaximumAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

DivideByMaximumAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

Instantiates a new node type.

DivideByMaximumAlgorithm(DivideByMaximumAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

Instantiates a new node type.

DOCUMENTATION_BELOW - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Flag that indicates that documentation should be shown below if enabled.

DOCUMENTATION_BELOW - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates that documentation should be shown below if enabled.

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

DocumentChangeListener - Class in org.hkijena.jipipe.installer.linux.ui.utils

Listener for any changes in a Document

DocumentChangeListener() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener

DocumentChangeListener - Class in org.hkijena.jipipe.ui.components

Listener for any changes in a Document

DocumentChangeListener() - Constructor for class org.hkijena.jipipe.ui.components.DocumentChangeListener

DocumentedComponent - Class in org.hkijena.jipipe.ui.components

Wrapper around a component that adds a split pane that shows documentation

DocumentedComponent(boolean, MarkdownDocument, Component) - Constructor for class org.hkijena.jipipe.ui.components.DocumentedComponent

DocumentTabListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders DocumentTabPane tabs

DocumentTabListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer

Creates a new renderer

DocumentTabPane - Class in org.hkijena.jipipe.ui.components

JTabbedPane with larger tabs, ability to close tabs, singleton tabs that are hidden instead of being closed

DocumentTabPane() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabPane

Creates a new instance

documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

DocumentTabPane.CloseMode - Enum in org.hkijena.jipipe.ui.components

Behavior of the tab close button

DocumentTabPane.DocumentTab - Class in org.hkijena.jipipe.ui.components

Encapsulates a tab

doInBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

doInBackground() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

doInBackground() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

done() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

done() - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

done() - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

done() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

DotSlideshow - Class in org.hkijena.jipipe.utils

DotSlideshow() - Constructor for class org.hkijena.jipipe.utils.DotSlideshow

DoubleAndDoublePairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

DoubleAndDoublePairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter

Creates a new instance

DoubleAndDoublePairParameter(DoubleAndDoublePairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter

Creates a copy

DoubleAndDoublePairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple DoubleAndDoublePairParameter

DoubleArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables

Converts a column to a table

DoubleArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

DoubleArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

TableColumn that contains doubles.

DoubleArrayTableColumn(double[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

Creates a new instance

DoubleList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Double

DoubleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

Creates a new empty list

DoubleList(DoubleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList

Creates a copy

DoubleParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Double

DoubleParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

DoublePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Double

DoublePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

DoubleRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Double

DoubleRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.DoubleRangeParameterGenerator

Creates a new instance

download(URL, Path, Consumer<Integer>) - Static method in class org.hkijena.jipipe.installer.linux.api.WebUtils

Downloads the URL to the output file

download(URL, Path, Consumer<Integer>) - Static method in class org.hkijena.jipipe.utils.WebUtils

Downloads the URL to the output file

DownloadFilesDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

DownloadFilesDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

DownloadFilesDataSource(DownloadFilesDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

DownloadOMEROImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms

DownloadOMEROImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

DownloadOMEROImageAlgorithm(DownloadOMEROImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

DownloadOMEROTableAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms

DownloadOMEROTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

DownloadOMEROTableAlgorithm(DownloadOMEROTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

dragDropEnd(DragSourceDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragExit(DragSourceEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

dragGestureRecognized(DragGestureEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

draw(ImageProcessor, ImageSliceIndex, boolean, boolean, boolean, boolean, boolean, boolean, int, Color, Color, Collection<Roi>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

drawCheck(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

drawCheck(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

drawHorizontalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a horizontal orientation.

drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draw a single data item.

drawMask(boolean, boolean, int, ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Draws the ROI over an existing mask image

drawVerticalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Draws the visual representation of a single data item when the plot has a vertical orientation.

drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dropActionChanged(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

dummyAccess(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets up a dummy access.

duplicate() - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeData

Duplicates the data

duplicate() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Creates a deep copy

duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

duplicate() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the algorithm.

duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

duplicate(JIPipeGraphNode) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Copies an existing algorithm instance

duplicate(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

duplicate(Object) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

Duplicates the parameter

duplicate() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

duplicate() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

duplicate() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

duplicate() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

duplicate() - Method in class org.hkijena.jipipe.extensions.strings.StringData

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

duplicate() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

duplicateColumn(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Duplicates a column

duplicateNode(T) - Static method in class org.hkijena.jipipe.JIPipe

Duplicates a JIPipeGraphNode

DynamicCategoryEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.enums

DynamicCategoryEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a new instance with null value

DynamicCategoryEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a copy

DynamicCategoryEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

Creates a new instance

DynamicCategoryEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.enums

Deserializes DynamicCategoryEnumParameter

DynamicCategoryEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.enums

Serializes DynamicCategoryEnumParameter

DynamicEnumParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum.

DynamicEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Creates a new instance with null value

DynamicEnumParameter(T) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Creates a new instance

DynamicEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

DynamicEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

DynamicEnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for dynamic enum-like parameters for non Enum data types

DynamicSetParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum where a set of items can be selected Use DynamicEnumParameterSettings to define a supplier for the items.

DynamicSetParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Creates a new instance with null value

DynamicSetParameter(DynamicSetParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

DynamicSetParameter(Set<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

DynamicSetParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

DynamicSetParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

DynamicSetParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for dynamic enum-like parameters for non Enum data types

DynamicStringEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter that acts as dynamic enum.

DynamicStringEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a new instance with null value

DynamicStringEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a copy

DynamicStringEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter

Creates a new instance

DynamicStringEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

Deserializes DynamicStringEnumParameter

DynamicStringEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

Serializes DynamicStringEnumParameter

E

Edge() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

edgeAdded(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

EdgeConnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeConnectGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

EdgeDisconnectAllTargetsGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeDisconnectAllTargetsGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

EdgeDisconnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

EdgeDisconnectGraphHistorySnapshot(JIPipeGraph, Set<JIPipeDataSlot>, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

edgeRemoved(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

EditAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components

UI that edits an existing algorithm slot

EditAlgorithmSlotPanel(JIPipeDataSlot, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

Creates a new instance

EigenvalueSelection2D - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Available options to which Eigenvalue to select This is for 2D eigenvalues where two images are generated

ElementAccessOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

ElementAccessOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator

EnableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

EnablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

EnableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

EnableVirtualOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

EnableVirtualOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

endModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Ends a modification block started by beginModificationBlock().

enqueue(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Schedules a new runnable

enqueue(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Schedules a new runnable

enqueueProject(JIPipeProject, Path, int) - Static method in class org.hkijena.jipipe.JIPipe

Runs a project in a different thread.

enqueueProject(JIPipeProject, JIPipeRunSettings) - Static method in class org.hkijena.jipipe.JIPipe

Runs a project in the current thread.

Entry(String, String, String, String, String) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

EntryRankingFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRankingFunction

EntryRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRenderer

EntryToStringFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryToStringFunction

EntryUI(UserFriendlyErrorUI.Entry) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI

EnumItemInfo - Interface in org.hkijena.jipipe.extensions.parameters.primitives

Used by EnumParameterEditorUI to extract icons and other information for its enum value

EnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI that works for all enumerations

EnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

EnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for EnumParameterEditorUI

EnumParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Helper class to register Enum parameters

EnumParameterTypeInfo(String, Class<? extends Enum<?>>, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

EqualityPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

EqualityPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

equalize(List<ImagePlus>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the name and value are equal

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

equals(Object) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

equals(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

equals(Object) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Tests this renderer for equality with an arbitrary object.

EqualsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

EqualsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction

error(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

error(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

escapeString(String) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

Escapes a string, so it can be used within quotes

escapeString(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Escapes a string to be used within macros Will not add quotes around the string

escapeVariable(String) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

Escapes a variable name into a valid expression

evaluate(String, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

evaluate(Function, Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

evaluate(Constant, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

evaluate(Operator, Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

Runs the function on given parameters

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator

Evaluates the operator

evaluate(StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

Runs the expression and returns the result.

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateArrayFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateMapFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreatePairArrayFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapKeysFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapValuesFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ParseJsonFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToJsonFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction

evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction

evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator

evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator

evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator

evaluate() - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI

EVALUATOR - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter

exact(int) - Static method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

expandAllTree(JTree) - Static method in class org.hkijena.jipipe.utils.UIUtils

Expands the whole tree

expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

expandImageCanvas(ImagePlus, Color, int, int, Anchor) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Expands the canvas of an image

expandImageProcessorCanvas(ImageProcessor, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

expandImageStackCanvas(ImageStack, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

expandLeftTop(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Expands the canvas by moving all algorithms

expandRightBottom(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Expands the canvas

expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

ExpColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a exponential (base e) function

ExpColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation

ExplodeRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ExplodeRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

Instantiates a new node type.

ExplodeRoiAlgorithm(ExplodeRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

Instantiates a new node type.

exportAllSlicesToPNG() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

ExportCompartmentAsJsonNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportCompartmentAsJsonNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

ExportCompartmentToNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportCompartmentToNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

exportCurrentSliceToPNG() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

ExportData - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

ExportData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

ExportData(ExportData) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

ExportDataByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

ExportDataByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

ExportDataByParameter(ExportDataByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

ExportNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

ExportNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

exportROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

exportVideo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

ExpressionBuilderParameterUI - Class in org.hkijena.jipipe.extensions.parameters.expressions

A parameter UI for the expression builder.

ExpressionBuilderParameterUI() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI

ExpressionBuilderParameterUI.Mode - Enum in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionBuilderSyntaxChecker - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionBuilderSyntaxChecker(RSyntaxTextArea) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderSyntaxChecker

ExpressionBuilderUI - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionBuilderUI(String, Set<ExpressionParameterVariable>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

ExpressionBuilderUI.EntryRankingFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionBuilderUI.EntryRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionBuilderUI.EntryToStringFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionConstant(String, Object) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstant

ExpressionConstantEntry - Class in org.hkijena.jipipe.extensions.parameters.expressions

Organizes Operator instances and puts them together with a name and description

ExpressionConstantEntry(Constant) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

ExpressionConstantEntry(String, String, Constant) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

ExpressionEvaluator - Class in org.hkijena.jipipe.extensions.parameters.expressions

The base class for an evaluator

ExpressionEvaluator(Parameters) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionEvaluator

Constructor.

ExpressionFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions

Function that can be utilized in DefaultExpressionEvaluator.

ExpressionFunction(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

ExpressionFunction(String, int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

ExpressionFunctionEntry(String, String, String, ExpressionFunction) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry

ExpressionFunctionRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList.ExpressionFunctionRenderer

ExpressionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionOperator(String, int, Operator.Associativity, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator

ExpressionOperatorEntry - Class in org.hkijena.jipipe.extensions.parameters.expressions

Organizes Operator instances and puts them together with a name and description

ExpressionOperatorEntry(Operator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

ExpressionOperatorEntry(String, String, Operator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

ExpressionOperatorRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList.ExpressionOperatorRenderer

ExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions

A parameter that contains an expression.

ExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

ExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

ExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

ExpressionParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.expressions

Controls the behavior of an ExpressionParameter.

ExpressionParameterVariable - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionParameterVariable(String, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

ExpressionParameterVariableSource - Interface in org.hkijena.jipipe.extensions.parameters.expressions

Provides the list of available variables.

ExpressionTableColumnGeneratorProcessor - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

Processor-like parameter that maps a column generator to a string

ExpressionTableColumnGeneratorProcessor() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ExpressionTableColumnGeneratorProcessor

Creates a new instance

ExpressionTableColumnGeneratorProcessor(ExpressionTableColumnGeneratorProcessor) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ExpressionTableColumnGeneratorProcessor

Creates a copy

ExpressionTableColumnGeneratorProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

ExpressionTableColumnGeneratorProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ExpressionTableColumnGeneratorProcessorParameterList

Creates a new instance

ExpressionTableColumnGeneratorProcessorParameterList(ExpressionTableColumnGeneratorProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ExpressionTableColumnGeneratorProcessorParameterList

Creates a copy

ExpressionTesterMenuExtension - Class in org.hkijena.jipipe.extensions.parameters

Adds an entry "New table" to the JIPipe menu

ExpressionTesterMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.ExpressionTesterMenuExtension

Creates a new instance

ExpressionTesterUI - Class in org.hkijena.jipipe.utils

A developer tool to test DefaultExpressionEvaluator

ExpressionTesterUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.utils.ExpressionTesterUI

ExpressionVariableRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList.ExpressionVariableRenderer

EXTENSION_FILTER_BMP - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_CSV - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_HTML - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIP - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIPC - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JIPE - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_JPEG - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_MD - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_PDF - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_PNG - Static variable in class org.hkijena.jipipe.utils.UIUtils

EXTENSION_FILTER_SVG - Static variable in class org.hkijena.jipipe.utils.UIUtils

ExtensionContentAddedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent

ExtensionContentRemovedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent

ExtensionDiscoveredEvent(JIPipe, JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent

ExtensionRegisteredEvent(JIPipeRegistry, JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent

ExtensionSettings - Class in org.hkijena.jipipe.extensions.settings

Settings related to how algorithms are executed

ExtensionSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ExtensionSettings

Creates a new instance

extract(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache

extract(JIPipeGraphNode, JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache.

extract(JIPipeGraphNode, String, String) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Tries to extract data from the cache.

extract(Collection<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Copies the selected algorithms into a new graph Connections between the nodes are kept

ExtractAndReplaceAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Generates annotations from filenames

ExtractAndReplaceAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

New instance

ExtractAndReplaceAnnotation(ExtractAndReplaceAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

Copies the algorithm

extractAnnotationsFromPython(PyDictionary) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Sets annotations from a Python dictionary

ExtractFileName - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ExtractFileName(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

ExtractFileName(ExtractFileName) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

Copies the algorithm

ExtractFromROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

ExtractFromROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

ExtractFromROIAlgorithm(ExtractFromROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

ExtractImageInRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

ExtractImageInRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

ExtractImageInRoiAlgorithm(ExtractImageInRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

extractMergedAnnotations(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Extracts merged annotations

ExtractParent - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

ExtractParent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

ExtractParent(ExtractParent) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

Copies the algorithm

ExtractRegexMatchesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ExtractRegexMatchesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction

F

FactorizeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Converts each entry into a factor

FactorizeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation

FancyPasswordField - Class in org.hkijena.jipipe.ui.components

A JXTextField with some fancy additions

FancyPasswordField(JLabel) - Constructor for class org.hkijena.jipipe.ui.components.FancyPasswordField

Creates a new instance

FancyTextField - Class in org.hkijena.jipipe.ui.components

A JXTextField with some fancy additions

FancyTextField(JLabel, String) - Constructor for class org.hkijena.jipipe.ui.components.FancyTextField

Creates a new instance

FastHoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hough circle transform This code is based on https://github.com/closms/detectcircles

FastHoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

FastHoughSegmentation2DAlgorithm(FastHoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

fatal(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

fatal(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

FFT2DForwardTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DForwardTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

Creates a new instance

FFT2DForwardTransform(FFT2DForwardTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

Creates a copy

FFT2DInverseTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DInverseTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

Creates a new instance

FFT2DInverseTransform(FFT2DInverseTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

Creates a copy

FFT2DSwapQuadrants - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

Applies a FFT forward transformation

FFT2DSwapQuadrants(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

Creates a new instance

FFT2DSwapQuadrants(FFT2DSwapQuadrants) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

Creates a copy

FIJI_DOWNLOAD_URL - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun

FIJI_UPDATE_SITES - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun

FileChooserSettings - Class in org.hkijena.jipipe.extensions.settings

Settings concerning file dialogs

FileChooserSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.FileChooserSettings

FileChooserSettings - Class in org.hkijena.jipipe.installer.linux.ui.utils

Settings concerning file dialogs

FileChooserSettings() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

FileData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Data containing a file

FileData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData

FileData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData

FileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input file

FileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Initializes the algorithm

FileDataSource(FileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Copies the algorithm

FileListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input file

FileListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Initializes the algorithm

FileListDataSource(FileListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Copies the algorithm

FileParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a File parameter

FileParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

FilePathParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a Path parameter

FilePathParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

FilePathParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Attached to the getter or setter of Path parameter to setup the GUI

FilesystemDataSlotPreview - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis

Renders filesystem data as table cell

FilesystemDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreview

Creates a new renderer

FilesystemExtension - Class in org.hkijena.jipipe.extensions.filesystem

Extension that provides filesystem data types

FilesystemExtension() - Constructor for class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

FileSystemNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

FileSystemNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

FileTableModel - Class in org.hkijena.jipipe.ui.ijupdater

Copy of FileTableModel for usage in JIPipe

FileTableModel(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModel

FileTableModelFilter - Class in org.hkijena.jipipe.ui.ijupdater

FileTableModelFilter(SearchTextField, ViewOptions.Option) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter

fileToRow - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

fillPaintIndex - Variable in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier

FilterAndMergeRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterAndMergeRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterAndMergeRoiByStatisticsScriptAlgorithm(FilterAndMergeRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Filters input files

FilterPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

Instantiates the algorithm

FilterPaths(FilterPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

Copies the algorithm

FilterROIByOverlapAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

FilterROIByOverlapAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

FilterROIByOverlapAlgorithm(FilterROIByOverlapAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

FilterRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsAlgorithm(FilterRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

FilterRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterRoiByStatisticsScriptAlgorithm(FilterRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

Instantiates a new node type.

FilterTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

FilterTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

Creates a new instance

FilterTableAlgorithm(FilterTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

Creates a copy

finalize() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

finalize() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

finalize() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

finalize() - Method in class org.hkijena.jipipe.ui.components.FormPanel

findCompartmentUIs(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Finds open JIPipeCompartmentUI tabs

findCompatibleTargetAlgorithms(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI

Finds all algorithms that fit to the slot according to the information in JIPipeNodeInfo

findCompatibleTargetAlgorithms(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI

Finds all algorithms that fit to the slot according to the information in JIPipeNodeInfo

findExtensionById(String) - Method in class org.hkijena.jipipe.JIPipe

findExtensionById(String) - Method in interface org.hkijena.jipipe.JIPipeRegistry

findFileByExtensionIn(Path, String...) - Static method in class org.hkijena.jipipe.utils.PathUtils

Finds a file in the specified folder with given extension

findFilesByExtensionIn(Path, String...) - Static method in class org.hkijena.jipipe.utils.PathUtils

Finds a file in the specified folder with given extension

findNodeGraphUIs(JIPipeWorkbench, NodeGroup) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Finds open JIPipeCompartmentUI tabs

FindParticles2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

Converts a mask to ROI and ROI measurements

FindParticles2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

FindParticles2D(FindParticles2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

Copies the algorithm

findRangeBounds(CategoryDataset) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the range of values from the specified dataset that the renderer will require to display all the data.

findRowWithAnnotations(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Finds the row that matches the given traits

findTabNameFor(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Finds the tab title for the content

findUnsatisfiedDependencies(Set<JIPipeDependency>) - Static method in interface org.hkijena.jipipe.JIPipeDependency

Finds all dependencies that cannot be met

findWorkerOf(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Finds the worker associated to the JIPipeRunnable

findWorkerOf(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Finds the worker associated to the JIPipeRunnable

fireChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Fires a TableModelEvent to all listeners

fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

fireRowChanged(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

fitImageToScreen() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

fitRowHeights(JTable) - Static method in class org.hkijena.jipipe.utils.UIUtils

Fits the row heights of a JTable

flatten() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Makes all ROI visible on all stacks

FloatList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Float

FloatList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

Creates a new empty list

FloatList(FloatList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList

Creates a copy

FloatParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Float

FloatParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

FloatPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Float

FloatPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

FloatRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Float

FloatRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.FloatRangeParameterGenerator

Creates a new instance

FloorColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

FloorColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation

flush(Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Saves the stored data to the provided storage path and sets data to null Warning: Ensure that depending input slots do not use this slot, anymore!

FolderData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Data that stores a folder

FolderData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData

FolderData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData

FolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input folder

FolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Initializes the algorithm

FolderDataSource(FolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Copies the algorithm

FolderListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input folder

FolderListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Creates a new instance

FolderListDataSource(FolderListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Copies the algorithm

forCategory(String) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Returns a report for the specified category

FORCE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to force reflection

FORCE_TRAVERSE - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, the parameter collection is always traversed, even if the provided parameter collection was already traversed

forceCloseTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Closes the tab.

forEachIndexedSlice(ImagePlus, BiConsumer<ImageProcessor, Integer>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs the function for each slice

forEachIndexedZCTSlice(ImagePlus, BiConsumer<ImageProcessor, ImageSliceIndex>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs the function for each Z, C, and T slice.

forEachIndexedZTSlice(ImagePlus, BiConsumer<Map<Integer, ImageProcessor>, ImageSliceIndex>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs the function for each Z and T slice.

forEachSlice(ImagePlus, Consumer<ImageProcessor>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs the function for each slice

formatDateTime(LocalDateTime) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

A nice human-readable format

formatDateTime(LocalDateTime) - Static method in class org.hkijena.jipipe.utils.StringUtils

A nice human-readable format

formatDuration(long) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Formats a duration in milliseconds to something readable

formatDuration(long) - Static method in class org.hkijena.jipipe.utils.StringUtils

Formats a duration in milliseconds to something readable

formatNumber(double) - Static method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

FormPanel - Class in org.hkijena.jipipe.installer.linux.ui.utils

Organizes UI in a form layout with integrated help functionality, and grouping with conditional visibility

FormPanel(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Creates a new instance

FormPanel - Class in org.hkijena.jipipe.ui.components

Organizes UI in a form layout with integrated help functionality, and grouping with conditional visibility

FormPanel(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel

Creates a new instance

FormPanel.FutureComponent - Class in org.hkijena.jipipe.ui.components

FormPanel.GroupHeaderPanel - Class in org.hkijena.jipipe.installer.linux.ui.utils

Panel that contains a group header

FormPanel.GroupHeaderPanel - Class in org.hkijena.jipipe.ui.components

Panel that contains a group header

FormPanel.HoverHelpEvent - Class in org.hkijena.jipipe.installer.linux.ui.utils

Event triggered when the user triggers a hover-help

FormPanel.HoverHelpEvent - Class in org.hkijena.jipipe.ui.components

Event triggered when the user triggers a hover-help

forUpload - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

FrangiVesselnessFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Applies CLAHE image enhancing

FrangiVesselnessFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

FrangiVesselnessFeatures(FrangiVesselnessFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

Copies the algorithm

FrangiVesselnessFeatures.SlicingMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Available ways how to handle higher-dimensional images

fromCSV(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Loads a table from CSV

fromEvaluator(ExpressionEvaluator, boolean) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

Extracts operators from an evaluator

fromEvaluator(ExpressionEvaluator, boolean) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

Extracts operators from an evaluator

fromFile(Path) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument

Loads a document from file

fromFile(Path) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument

Loads a document from file

fromFolder(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Loads data from a folder

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Loads data from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

fromJson(JsonNode) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Loads this configuration from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject

Loads the project from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Loads this graph from JSON

fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Loads this algorithm from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Loads the holder from JSON

fromJson(JsonNode) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Loads metadata from JSON

fromJson(JsonNode) - Method in interface org.hkijena.jipipe.utils.JsonDeserializable

Loads JSON data into the current object instance

fromPluginResource(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument

Loads a document from the JIPipe plugin resources

fromPluginResource(String) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument

Loads a document from the JIPipe plugin resources

fromPython(PyDictionary) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts a Python dictionary of column name to row data list to a results table

fromTableModel(TableModel) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts a table model into a string results table

fullRedraw() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Removes all UIs and adds them back in

FunctionParameter<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

A parameter that allows to model a function with an input, an output, and parameters.

FunctionParameter(Class<I>, Class<P>, Class<O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

Creates a new instance

FunctionParameter(FunctionParameter<I, P, O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

FunctionParameter.Deserializer<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Deserializes the parameter

FunctionParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.functions

Serializes the parameter

FunctionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.functions

Editor for FunctionParameter

FunctionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

Creates new instance

FunctionParameterInputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter input

FunctionParameterInputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

FunctionParameterOutputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter output

FunctionParameterOutputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

FunctionParameterParameterAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions

Access to a FunctionParameter parameter

FunctionParameterParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

FunctionSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions

Panel that allows the user to select an ExpressionFunction

FunctionSelectorList() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList

FunctionSelectorList.ExpressionFunctionRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions

FutureComponent(Component, GridBagConstraints, Component, GridBagConstraints, boolean) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.FutureComponent

G

GaussianBlur2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

GaussianBlur2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

Instantiates a new node type.

GaussianBlur2DAlgorithm(GaussianBlur2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

Instantiates a new node type.

GaussianBlur3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

GaussianBlur3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

Instantiates a new node type.

GaussianBlur3DAlgorithm(GaussianBlur3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

Instantiates a new node type.

GeneralDataSettings - Class in org.hkijena.jipipe.extensions.settings

GeneralDataSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

GeneralUISettings - Class in org.hkijena.jipipe.extensions.settings

All settings for JIPipeGraphEditorUI

GeneralUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GeneralUISettings

generateAnnotation(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression

Generates an annotation

generateAnnotationValue(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

Generates an annotation value

GenerateColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that adds or replaces a column by a generated value

GenerateColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

Creates a new instance

GenerateColumnAlgorithm(GenerateColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

Creates a copy

generateCompendiumFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

generateCompendiumFor(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Generates the compendium page for the item

generateCompendiumFor(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI

generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm

Generates data batches.

generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

GenerateDocumentationUtil - Class in org.hkijena.jipipe.extensions.clij2

GenerateDocumentationUtil() - Constructor for class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil

GeneratedParameters - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Encapsulates the generation of parameters

GeneratedParameters(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

GeneratedParameters(GeneratedParameters) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

GenerateFromMathExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

GenerateFromMathExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

Instantiates a new node type.

GenerateFromMathExpression2D(GenerateFromMathExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

Instantiates a new node type.

generateMetadataString(JIPipeDataSlot, int, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Generates a unique string based on metadata for the selected row

generateMetadataString(JIPipeExportedDataTable, int, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

generateRotations(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

generateSlice(int, int, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

GenerateStructureElementAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Wrapper around ImageProcessor

GenerateStructureElementAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

Instantiates a new node type.

GenerateStructureElementAlgorithm(GenerateStructureElementAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

Instantiates a new node type.

GenerateTableFromExpressionAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that adds or replaces a column by a generated value

GenerateTableFromExpressionAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

Creates a new instance

GenerateTableFromExpressionAlgorithm(GenerateTableFromExpressionAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

Creates a copy

generateTempDirectory(String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Generates a temporary directory

generateTempDirectory(String) - Static method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

Generates a temporary directory

generateTempFile(String, String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Generates a temporary directory

GenerateUniqueAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Generates annotations from filenames

GenerateUniqueAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

New instance

GenerateUniqueAnnotation(GenerateUniqueAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

Copies the algorithm

generateWholeCompendium() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Generates a document that contains the whole compendium

GenericOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

GenericOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

GenericOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator

GenericPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

GenericPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

GenericPredicateOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator

get() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

get(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

get() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

get(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Returns the parameter with key

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

get(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Gets the parameter value

get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

get() - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

get() - Method in class org.hkijena.jipipe.utils.InstantFuture

get(long, TimeUnit) - Method in class org.hkijena.jipipe.utils.InstantFuture

getA1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getAbsoluteFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

getAbsoluteFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

getAbsoluteFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

getAbsoluteFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

getAbsolutePath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

getAbsolutePaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

getAcceptedDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getAcceptedDataTypeId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getAccess() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent

getAction() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent

getActions() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getActiveWindow() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

getAdapter() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

getAdapterForImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns a matching adapter for an ImageJ data type

getAdapterForImageJData(Object) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Applies conversion from JIPipe to ImageJ data

getAdapterForJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns a matching adapter for a JIPipe data type

getAdapterForJIPipeData(JIPipeData) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Gets a matching adapter for the provided data

getAddableAlgorithms() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getAddDataToString() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

getAdditionalMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject

getAffiliations() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getAfterSlotConfiguration() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

getAlgorithm() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getAlgorithm() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeSlotsChangedEvent

getAlgorithm() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getAlgorithm() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI

getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI

getAlgorithm() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

getAlgorithmBackup(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getAlgorithmCompartment(JIPipeProjectWorkbench, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Returns the compartment name of the algorithm that generated the data

getAlgorithmCompartment() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the compartment name of the algorithm that generated the data

getAlgorithmDocumentation(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

getAlgorithmDocumentation(JIPipeGraphNode) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

getAlgorithmGraph() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getAlgorithmGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getAlgorithmId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getAlgorithmId() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

getAlgorithmName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getAlgorithmName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getAlgorithmName(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Returns the name of the algorithm that generated the data

getAlgorithmName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the name of the algorithm that generated the data

getAlgorithmParametersJson() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getAlgorithmsWithCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the algorithms within the specified compartment ID.

getAlgorithmsWithExternalInput() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getAlgorithmTooltip(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an algorithm.

getAlgorithmTooltip(JIPipeNodeInfo, boolean) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an algorithm

getAllChildParameters(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Returns all child parameters of the entry If the entry is an JIPipeParameterAccess, it is returned.

getAllDescriptions() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getAllowedInputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getAllowedInputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

getAllowedOutputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getAllowedOutputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

getAllowedTypes() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

getAllPredecessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils

Gets all parent nodes of the vertex

getAllPredecessors(V) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

getAllSuccessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils

Gets all successors of the vertex

getAlpha() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

getAnchor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getAngle() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

getAnnotation(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getAnnotationBoundingHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationBoundingWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getAnnotationC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationCLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

getAnnotationColumnChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getAnnotationColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getAnnotationColumnSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getAnnotationExpression() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm

getAnnotationExpression() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

getAnnotationMap() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Mutable access to the annotations

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm

getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Returns an existing annotation Only the exact type is used for searching

getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns an existing annotation Only the exact type is used for searching

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getAnnotationOfType(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Finds an annotation for this parameter

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getAnnotationOfType(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getAnnotationOr(int, String, JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns the annotation of specified type or the alternative value.

getAnnotationPrefix() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

getAnnotations(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the list of annotations for a specific data row

getAnnotations(Set<Integer>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the list of annotations for specific data rows

getAnnotations() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets the list of annotations.

getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets the list of annotations

getAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

getAnnotations(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

Gets all annotations at the specified row

getAnnotationT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getAnnotationT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationTLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

getAnnotationX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getAnnotationX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationXLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

getAnnotationY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getAnnotationY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationYLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

getAnnotationZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getAnnotationZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getAnnotationZLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

getAppendDataTypeMetadataKey() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getArray() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns the value as array or an array with the value if it is not an array.

getArtifactPaint() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the paint used to color the median and average markers.

getAssembleTemplatesBackground() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getAssembleTemplatesOutput() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getAttachment(Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns an attachment or null if it does not exist

getAuthors() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getAuthors() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getAuthors() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getAutoLayout() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getAutoSaveDelay() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getAvailableAlgorithmIcons() - Static method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

getAvailableData() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Contains single-column series that will be later spliced together depending on the user's settings

getAvailableParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the available parameters in the graph

getAvailableParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

An optional reference of all available parameters.

getAvailableSources(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all available sources for an input slot.

getAvailableTargets(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all available target for an output slot Does not check for cycles.

getB1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getBackgroundImage() - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

getBackgroundType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getBackupGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getBackupList() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getBandwidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getBaselineOffset() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

getBaseName() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

getBaseName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

getBaseName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getBenchedAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getBinAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getBinAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getBins() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getBins() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getBioFormatsCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getBitDepthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getBlack() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the black color.

getBlack() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the black color.

getBlack() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the black color.

getBlockRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBlurSigmaZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

getBorderColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getBorderColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The border color for algorithm nodes

getBorderColor() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getBorderColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getBorderColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a border color for JIPipeNodeInfo

getBorderDefinition() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

getBorderInsets(Component, Insets) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder

getBorderInsets(Component, Insets) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder

getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getBottom() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getBottomY() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Get the Y location of the bottom part

getBounds() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Returns the bounds of area described by the Roi

getById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the data class with specified ID

getC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

getCache() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCache() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent

getCachedCache(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

Returns the cache of the current algorithm state.

getCachedDataTypes() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Returns statistics on how many rows of given data type have been cached

getCachedId(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

Returns the current cache state of an algorithm node.

getCachedRowNumber() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Returns the number of cached data rows

getCalibrationMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCanvas() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getCanvas() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

getCanvas() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

getCanvas() - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior

Returns the canvas the contains the algorithm nodes

getCanvasEqualizer() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent

getCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getCategories() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

getCategory() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the algorithm category

getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getCategory() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm category

getCategory(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getCategory() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getCategory() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getCategoryAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getCategoryAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getCategoryIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getCategoryOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the category of an algorithm

getCategoryParameter() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getCellRendererFor(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns a cell renderer for dataslot result table

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

getCentroid(Roi) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Gets the centroid of a ROI

getChangedGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getChannelColorAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

getChannelName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

getChannelPosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

The overall channel position of the ROIs.

getChannelReordering() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

getChannelSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getChannelToSlotAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

getChartPanel() - Method in class org.hkijena.jipipe.ui.components.PlotReader

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getChildParameterCollections() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection

Returns all sub-parameter collections

getChildParameterCollections() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getChildren() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getCitation() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getCitation() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getCitation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getCleanedMenuPath(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Cleans a menu path string

getCleanedMenuPath(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Cleans a menu path string

getCloseMode() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

getCode() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

getCollection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm

getColor() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop

getColor() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getColorForGap(int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

getColorMap() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getColorMap() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getColorMap() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon

getColorMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getColorMode() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getColors() - Method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap

getColumn() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

getColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Returns the column definition of given index

getColumn() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

getColumnAsDouble(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Gets a copy of a column by name

getColumnAssignments() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getColumnAssignments() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getColumnAsString(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Gets a copy of a column by name

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getColumnClass(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnCopy(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column as vector.

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

getColumnCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getColumnCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

getColumnFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

getColumnHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnIdentifiers(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils

Gets the table's column names

getColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the index of an existing column

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getColumnName() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

getColumnName() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getColumnName(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnName(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

getColumnName(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getColumnName(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getColumnNames() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getColumnOperation() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction

getColumnOperationById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

Returns an operation by ID

getColumnRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnReference(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column as vector.

getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

getColumnWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnX2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getColumnY2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getComboBox() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentRenamedEvent

getCompartment() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the compartment the algorithm is located within

getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI

getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI

Returns the compartment ID

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI

Returns the graph compartment

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI

Returns the compartment ID

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI

Returns the graph compartment

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getCompartmentGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getCompartmentName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getCompartmentName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getCompartmentOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the graph compartment ID of the algorithm This graph must contain the algorithm

getCompartments() - Method in class org.hkijena.jipipe.api.JIPipeProject

getCompatibleTypes() - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

Returns all types compatible with the MacroWrapperAlgorithm

getComponentNameAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getCompression() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

getCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getConfiguration() - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.SlotsChangedEvent

getConfiguration() - Method in class org.hkijena.jipipe.api.JIPipeRun

getConfirmIcon() - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton

getConflictWarnings() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getConstant() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

getConstant() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

getContent() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getContent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

getContent() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

getContent() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent

getContent() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent

getContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getContent() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

getContentPanel() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

getContentPanel() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getContents() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getContentX() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getContentY() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getContext() - Method in class org.hkijena.jipipe.JIPipeGUICommand

getContext() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getContext() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

getContext() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getContext() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

getContext() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

getContext() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

getContextActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getControlSize() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

getControlSize() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getControlTextColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the control text color.

getControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the control text color.

getControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the control text color.

getConverter() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

The converter if the data types cannot be trivially converted

getCountAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getCounterAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

Converts the credentials into a SciJava OMERO location

getCropRegions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getCropRegions() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getCurrentConnectionDragSource() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentConnectionDragTarget() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getCurrentExpressionValue() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI

getCurrentHighlightedForDisconnect() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getCurrentlySelectedValue() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

getCurrentMode() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI

getCurrentPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getCurrentRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

getCurrentRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getCurrentSlicePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getCustomDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getCustomDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the custom description that is set by the user

getCustomMax() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCustomMenuRegistry() - Method in class org.hkijena.jipipe.JIPipe

getCustomMenuRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getCustomMenus() - Static method in class org.hkijena.jipipe.JIPipe

getCustomMin() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

getCustomName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getCustomName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getDarkBorderColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The border color for algorithm nodes (dark theme)

getDarkFillColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getDarkFillColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The fill color for algorithm nodes (dark theme)

getData(int, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the data stored in a specific row.

getData(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

getData() - Method in class org.hkijena.jipipe.extensions.strings.StringData

getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getData() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview

getData() - Method in class org.hkijena.jipipe.utils.RankedData

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getDataAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns as many data entries as rows

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getDataAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns as many data entries as rows

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getDataClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the true type of the data at given row

getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

getDataClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

getDataInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getDatasetId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

getDatasetIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource

getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getDatasetNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getDatasetNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getDatasetNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getDataSlot() - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

getDataSourcesFor(Class<? extends T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns data source algorithms that can generate the specified data type

getDataTooltip(JIPipeDataInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for data

getDataToString() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getDataTypeOf(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Returns the true data type (if available) or the accepted data type of the given row

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent

getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent

getDatatypeRegistry() - Method in class org.hkijena.jipipe.JIPipe

getDatatypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getDataTypes() - Static method in class org.hkijena.jipipe.JIPipe

getDataTypesByMenuPaths() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the registered data types, grouped by their menu paths

getDateTime() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry

getDeactivatedAlgorithms() - Method in class org.hkijena.jipipe.api.JIPipeProject

Returns a list of all nodes that cannot be executed or are deactivated by the user.

getDeactivatedAlgorithms() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user

getDeactivatedAlgorithms(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user

getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns all data infos added by the dependency

getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets all algorithms declared by the dependency

getDefaultParameterCollectionDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getDefaultParameterCollectionDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection

A default description.

getDefaultParameterCollectionName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getDefaultParameterCollectionName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection

A default name.

getDefaultPassword() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getDefaultRunThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getDefaultServer() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getDefaultSortOrder() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

getDefaultTemplateProject() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project instance based on the current template selection

getDefaultTestBenchThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getDefaultUserName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getDefaultViewMode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getDeltaAngle() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getDependencies() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

getDependencies() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProject

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all dependencies of all algorithms

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns a list of all dependencies this algorithm currently has.

getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

getDependencies() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns all dependencies

getDependencies() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyAlgorithmIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyCitations() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyCitations() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Returns all dependent work

getDependencyDatatypeClasses() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyDatatypeIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

getDependencyId() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyId() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyId() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyId() - Method in interface org.hkijena.jipipe.JIPipeDependency

getDependencyId() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyId() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getDependencyLocation() - Method in interface org.hkijena.jipipe.JIPipeDependency

Gets the location of the JAR/JSON that defined the dependency

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDependencyVersion() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDependencyVersion() - Method in interface org.hkijena.jipipe.JIPipeDependency

getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getDescription() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getDescription() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getDescription() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation

getDescription() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getDescription() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getDescription(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name or custom name.

getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getDescription() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm description

getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

A description

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns a description

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getDescription() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

getDescription() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry

getDescription() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

getDescription() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getDescription() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getDescription() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getDescription() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getDescription() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

getDescription() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getDescription() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getDescription() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

getDescription() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getDescriptionArea() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel

getDescriptionArea() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

getDescriptionOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the description of a data type

getDescriptionOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the description of an algorithm

getDesktopColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the desktop color.

getDesktopColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the desktop color.

getDesktopColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the desktop color.

getDespeckleIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDestination_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

getDetails() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getDetails() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getDevice() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getDialog() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

getDialog() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

getDialog() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

getDilationErodeSteps() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getDilationIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getDimension() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

getDimensionalityOf(Class<? extends ImagePlusData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

Gets the dimensionality of ImagePlusData

getDimensionCOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getDimensionOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getDimensionTOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getDimensionZOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getDisplayedName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getDisplayedParameters() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

getDisplayName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns a name that includes the algorithm name and the slot name.

getDisplayName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getDisplayName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getDisplayName(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Returns a name that identifies this row

getDisplayName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns a name that identifies this row

getDisplayOperationsFor(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all import operations for a data type ID

getDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.HoverHelpEvent

getDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

getDocument() - Method in class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent

getDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getDocumentationPanel() - Method in class org.hkijena.jipipe.ui.components.DocumentedComponent

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getDocumentTabPane() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

getDoubleValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getDragAndDropBehavior() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

Returns a duplicate of the contained image

getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Returns a duplicate of the contained image

getEdgesBetween(JIPipeGraphNode, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Gets all edges between two algorithm nodes

getEffectiveInputSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Returns the number of input slots that are not parameter slots.

getEffectiveInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Method that can be overwritten by child classes.

getEffectiveInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getEigenvalueSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getEigenvalueSelection2D() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getEmail() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getEntry(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getEntryClass() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getEnumValues(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Gets all enum values via reflection

getEqualsString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getEquivalentAlgorithm(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the algorithm that has the same ID as the foreign algorithm in the foreign graph.

getEquivalentRows(Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the row indices grouped by the values of the provided columns

getEquivalentSlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the slot with the same name within the algorithm with the same ID.

getErosionIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getErroneousNodes() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getErroneousPlugins() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getError() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getEvaluator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter

getEvaluator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

Returns the evaluator instance that should evaluate this expression type

getEventBus() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getEventBus() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Event bus that triggers ParameterReferencesChangedEvent

getEventBus() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProject

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the even bus

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getEventBus() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Gets the event bus that posts events about the parameters

getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the event bus that post registration events

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the event bus that posts registration events

getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getEventBus() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getEventBus() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

getEventBus() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

getEventBus() - Method in class org.hkijena.jipipe.JIPipe

getEventBus() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getEventBus() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getEventBus() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getEventBus() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getEventBus() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getEventBus() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getEventBus() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI

Returns the event bus.

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI

Returns the event bus.

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI

Returns the event bus

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

getEventBus() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

getException() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent

getException() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent

getExecutorService() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Returns the ExecutorService or null.

getExpectedNumberOfObjects() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getExponent() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getExportedParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getExportedSlotNames() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getExporter() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getExporter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

getExporter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm

getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getExporterSettings() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

getExportHeight() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getExportWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getExpression() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

getExpression() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

getExpression() - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI

getExpressionList() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm

getExpressionRegistry() - Method in class org.hkijena.jipipe.JIPipe

getExpressionRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent

getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent

getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent

getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent

getExtensionBuilderLogo400() - Static method in class org.hkijena.jipipe.utils.UIUtils

getExtensionFilters() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getExtensionWorkbenchUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

getFactor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

getFactor1() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFactorZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

getFailedExtensions() - Method in class org.hkijena.jipipe.JIPipe

getFieldClass() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the parameter data type

getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getFieldClassInfoId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getFieldClassInfoId() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getFileFromModel(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

getFileNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

getFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

getFilePath() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

getFillBox() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the box is filled.

getFillColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getFillColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The fill color for algorithm nodes

getFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getFillColor() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getFillColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getFillColorAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getFillColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a fill color for JIPipeNodeInfo

getFillMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Returns all items that should be available

getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI

getFilterExpression() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

getFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

getFirstColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

getFirstIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the first input slot according to the slot order.

getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

GetFirstItemFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GetFirstItemFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction

getFirstName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getFirstOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the first output slot according to the slot order.

getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

getFlipMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

getFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

getFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

getFollowedDimension() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getFontSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getFontSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getForegroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getForegroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getFormatName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getFraction() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop

getFramePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

The overall frame position of the ROIs.

getFramesSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getFunction() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getFunction() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry

getFunction() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getFunctions() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

getGaussianAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

getGaussianSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getGaussSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

getGeneratedImageType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

getGeneratedImageType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

getGeneratedRows() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

getGeneratedType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

getGenerationSettingsInterface() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm

Returns the batch generation settings as interface

getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

getGeneratorDocumentationFor(Class<? extends JIPipeParameterGeneratorUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Returns documentation for the generator

getGeneratorsFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Returns all generators for the parameter class

getGeneratorType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

getGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getGraph() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Returns the reference to the graph.

getGraph() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject

getGraph() - Method in class org.hkijena.jipipe.api.JIPipeRun

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.GraphChangedEvent

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent

getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the graph this algorithm is located in.

getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent

getGraphEditorCursor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphEditorUI() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension

getGraphHistory() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory.GraphHistoryChangedEvent

getGraphHistory() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getGridColor() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getGridHeight() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

getGridWidth() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

getGroupedBySource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets the parameters grouped by the source

getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Gets the graphs's input node

getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the graphs's input node

getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Gets the graphs's output node

getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Gets the graphs's output node

getHeaderPanelBackground() - Static method in class org.hkijena.jipipe.utils.UIUtils

getHeavyIntermediateAlgorithmOutputSlots() - Method in class org.hkijena.jipipe.api.JIPipeProject

Returns a list of all nodes that generate heavy data (JIPipeHeavyData) and are intermediate (see getIntermediateAlgorithms()).

getHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

getHeight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getHeightAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getHeightTolerance() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getHistogramType() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getHyperstackReassignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

getIcon() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getIcon() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation

getIcon() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getIcon() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Icon shown in the UI

getIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getIcon(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts an icon for the enum value

getIcon() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

getIcon(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo

getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

getIcon() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

getIcon() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

getIcon() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getIcon() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

getIcon() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getIcon128FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIcon128FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon32FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIcon32FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon64FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIcon64FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIcon8FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIcon8FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the icon for a datatype

getIconFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the icon for a trait

getIconFromColor(Color) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates 16x16 a color icon

getIconFromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIconFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconHeight() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getIconHeight() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon

getIconHeight() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIconHeight() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getIconName() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

getIconURL() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getIconURLFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

getIconURLFor(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

getIconURLFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the icon resource path URL for a trait

getIconURLFromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns an icon from JIPipe resources

getIconURLFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns an icon from JIPipe resources

getIconWidth() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

getIconWidth() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon

getIconWidth() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ColorIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getIconWidth() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

getId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getId() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Generates an Id for this info

getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Unique identifier of this category

getId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getId() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

getId() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry

getId() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

getId() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

The ID of the selected entry

getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

The ID of the selected entry

getId() - Method in class org.hkijena.jipipe.JIPipe.DatatypeRegisteredEvent

getIdInGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the ID within the current graph.

getIdOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the ID of the algorithm within this graph.

getIdOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets the ID of the data type

getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Returns annotation types that should be ignored by the internal logic.

getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

getImage() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getImageFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

getImageFiltersOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

getImageId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

getImageIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource

getImageJAdapters() - Static method in class org.hkijena.jipipe.JIPipe

getImageJDataAdapterRegistry() - Method in class org.hkijena.jipipe.JIPipe

getImageJDataAdapterRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getImageJDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Gets the corresponding ImageJ data type

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

getImageJPlugins() - Method in class org.hkijena.jipipe.JIPipe

getImageJRoot() - Static method in class org.hkijena.ijupdatercli.Main

getImageJRoot() - Static method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getImageJUpdateSiteDependencies() - Method in interface org.hkijena.jipipe.JIPipeDependency

List of ImageJ update sites that are dependencies

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getImageJUpdateSites() - Method in interface org.hkijena.jipipe.JIPipeDependency

List of ImageJ update sites that provide the dependency

getImageJUpdateSites() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getImageNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getImageNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getImageTypeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getImageViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

getImporter() - Method in class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI

getImporterClassFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Gets the importer for the specified ImageJ data type

getImportOperationsFor(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all import operations for a data type ID

getIn() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

getInactiveControlTextColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the inactive control text color.

getInactiveControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the inactive control text color.

getInactiveControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the inactive control text color.

getIndex() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

getIndex() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

getIndexAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

getIndexIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getInfo() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getInfo() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the JIPipeNodeInfo that describes this algorithm

getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

getInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI

getInfoByFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Return a parameter type by its field class

getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets a matching info by Id

getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Returns a parameter type info by ID

getInheritanceConversions() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getInheritedSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Gets slot to inherit the data type from If null or empty, this slot does not inherit If it equals '*', the first available input slot is chosen

getInitialBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getInput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getInputAnnotationByFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getInputAnnotationColumnIntersection(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getInputAnnotationColumnUnion(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getInputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getInputData(String, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets stored data from an input slot

getInputData(JIPipeDataSlot, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets stored data from an input slot

getInputData(String, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets stored data from an input slot

getInputData(JIPipeDataSlot, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets stored data from an input slot

getInputRows(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns the row indices that belong to this data interface

getInputRows(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns the row indices that belong to this data interface

getInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the input slot with the specified name.

getInputSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent

getInputSlotImporters() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

getInputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets all input slot instances

getInputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getInputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getInputSlotOrder() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the input slot order

getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Raw access to all data stored in the batch

getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Raw access to all data stored in the batch

getInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getInputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all input slots ordered by the slot order

getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getInputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns general input data.

getInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getInputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

getInputType() - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter

getInstallationPath() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

getInstallerRun() - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow

getInstance(Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Returns a JIPipeDataInfo instance for the data class.

getInstance(String) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Returns a JIPipeDataInfo instance for the data type ID.

getInstance() - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DataExporterSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

getInstance() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

getInstance() - Static method in class org.hkijena.jipipe.JIPipe

getInstance() - Static method in class org.hkijena.jipipe.ui.components.SplashScreen

getInstance() - Static method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

getInstanceClass() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getInstanceClass() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

The algorithm class that is generated

getInstanceClass() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getInstanceFromRaw() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

Gets an instance from the raw properties file.

getInstanceGenerator() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getIntegerByDialog(Component, String, String, int, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Gets an integer by dialog

getIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Generates the list of integers based on the value

getIntermediateAlgorithms() - Method in class org.hkijena.jipipe.api.JIPipeProject

Returns all nodes that have at least one connected algorithm that uses its generated data.

getInternalGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

getInternalPath() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getInternalStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the internal storage path relative to the output folder.

getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getInvalidResponses() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Gets the response keys that are invalid

getIoMode() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

getIoMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Returns the renderer for the items

getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI

getItemMargin() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the item margin.

getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

getIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

getJiPipe() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

getJIPipeDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Gets the corresponding JIPipe data type

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

GetJIPipeSlotFolderAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

GetJIPipeSlotFolderAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

GetJIPipeSlotFolderAlgorithm(GetJIPipeSlotFolderAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

getJpegQuality() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getJsonFilePath() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getJsonNode() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the unique ID of this parameter

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getKey() - Method in class org.hkijena.jipipe.utils.MacroFlag

getKey() - Method in class org.hkijena.jipipe.utils.MacroSetting

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getKeyboardShortcut() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Returns an optional keyboard shortcut.

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getKeyClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

getKeyValuePairAnnotations(MetadataFacility, SecurityContext, DataObject) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getKnownNonAlphanumericOperatorTokens() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

getLabel() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getLabel() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getLabel(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts a custom label for the enum value

getLabel(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getLabel() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Label of this column

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getLabel() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getLabelFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

getLabelFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

getLabelGenerator() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getLanguage() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

The language info.

getLanguageName() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Returns the human-readable name of the language

getLargerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getLargerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getLastDataDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getLastDirectoryBy(String) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Gets the last directory by key

getLastIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getLastInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the last input slot according to the slot order.

GetLastItemFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GetLastItemFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction

getLastName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

getLastOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the last output slot according to the slot order.

getLastParametersDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getLastProjectsDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

getLastSaves() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

getLatestBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getLeft() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getLegendFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getLegendItem(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns a legend item for a series.

getLicense() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getLicense() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getLicense() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getLineColorAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLineMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

getLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getLineWidthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getListCellRendererComponent(JList<? extends Roi>, Roi, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.RoiListCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRenderer

getListCellRendererComponent(JList<? extends JIPipeExpressionRegistry.ExpressionFunctionEntry>, JIPipeExpressionRegistry.ExpressionFunctionEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList.ExpressionFunctionRenderer

getListCellRendererComponent(JList<? extends ExpressionOperatorEntry>, ExpressionOperatorEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList.ExpressionOperatorRenderer

getListCellRendererComponent(JList<? extends ExpressionParameterVariable>, ExpressionParameterVariable, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList.ExpressionVariableRenderer

getListCellRendererComponent(JList<? extends DocumentTabPane.DocumentTab>, DocumentTabPane.DocumentTab, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer

getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeGraphNode>, JIPipeGraphNode, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfoRef>, JIPipeDataInfoRef, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer

getListCellRendererComponent(JList<? extends Map.Entry<JIPipeDataInfo, JIPipeDataInfo>>, Map.Entry<JIPipeDataInfo, JIPipeDataInfo>, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer

getListCellRendererComponent(JList<? extends JIPipeParameterTypeInfo>, JIPipeParameterTypeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer

getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PathListCellRenderer

getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer

getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer

getListCellRendererComponent(JList<? extends ResultsTableData>, ResultsTableData, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeProjectTemplate>, JIPipeProjectTemplate, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer

getListCellRendererComponent(JList<? extends T>, T, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.WindowListCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeDependency>, JIPipeDependency, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer

getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer

getListCellRendererComponent(JList<? extends JIPipeDataSlot>, JIPipeDataSlot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer

getListCellRendererComponent(JList<? extends TableColumn>, TableColumn, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer

getListCellRendererComponent(JList<? extends JIPipeLogViewer.LogEntry>, JIPipeLogViewer.LogEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntryRenderer

getListCellRendererComponent(JList<? extends JIPipeTestbenchSnapshot>, JIPipeTestbenchSnapshot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer

getLocalRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getLocationCAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLocations() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

getLocationTAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLocationWithin(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the location within the specified compartment or null if none is set

getLocationXAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLocationYAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLocationZAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

getLog() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

getLog() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry

getLogFile() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

getLogicalOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

getLogLimit() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getLogo() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getLogo() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getLogo() - Static method in class org.hkijena.jipipe.utils.UIUtils

getLogo400() - Static method in class org.hkijena.jipipe.utils.UIUtils

getLogService() - Method in class org.hkijena.jipipe.JIPipe

getLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

getMacroParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

getMaintainer() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getManifestAttributes() - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getMapImage() - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

GetMapKeysFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GetMapKeysFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapKeysFunction

getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

GetMapValuesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GetMapValuesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapValuesFunction

getMarkdown() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument

getMarkdown() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument

getMatrix() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

getMatrix() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

getMax() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode

getMax_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getMaximumBarWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the maximum bar width as a percentage of the available drawing space.

getMaximumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getMaximumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getMaxInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getMaxIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getMaxNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMaxOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getMaxParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMaxParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMaxProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

getMaxProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent

getMaxProgress() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus

getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMaxSlope() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

getMaxThreads() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

getMaxThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

getMaxThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

getMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

getMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

getMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getMenuDisabledForeground() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the menu disabled foreground color.

getMenuDisabledForeground() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the menu disabled foreground color.

getMenuDisabledForeground() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the menu disabled foreground color.

getMenuExtensionsTargeting(MenuTarget, JIPipeWorkbench) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

Gets all extensions for a specific menu

getMenuPath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getMenuPath() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets the menu path of this algorithm

getMenuPath() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getMenuPath() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension

getMenuPathList() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getMenuPathOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the menu path of the data type

getMergedColumn(Set<String>, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a column that contains all values of the selected columns

getMergedColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

getMessage() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent

getMessage() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus

getMessages() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

getMetadata() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject

getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getMetadata() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getMetadata() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getMetadata() - Method in interface org.hkijena.jipipe.JIPipeDependency

getMetadata() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getMetadata() - Method in class org.hkijena.jipipe.JIPipeMutableDependency

getMetadataKeyFilter() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getMetadataValueLengthLimit() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

getMethod() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

getMimeType() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Returns the MIME type of this script

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.JsonData

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.StringData

Returns the MIME type of the string

getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.XMLData

getMimeType() - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

getMin() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode

getMin_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getMinimumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getMinimumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getMinIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getMinNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMinParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMinParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getMinScore() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

getMinThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

getMinThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

getMissingImageJSites() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

getMissingString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getMode() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getModel() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getMouseModelPixelCoordinate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

Gets the pixel coordinates inside the shown image under the mouse.

getMultiChannelMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

getMultiLineStringByDialog(Component, String, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Gets a multiline string by dialog

getMultiObjectMaximumBoundingBoxOverlap() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getMultiObjectScoreThreshold() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getName() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

getName() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getName() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

getName() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name or custom name

getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

getName() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getName() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

getName() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the algorithm name

getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns the algorithm name

getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

The name displayed in menus and other UI

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the parameter name that is displayed to the user

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry

getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getName() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

getName() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getName() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getName() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

getName() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

getName() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

getName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

getName() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getName() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

getName() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

getName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getName() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry

getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

getName() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getName() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

getName() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

getName() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getName() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

getName() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

getName() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

getName() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

getName() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

getName() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

getName() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Return the name of this theme, "Ocean".

getName() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getName() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

getName() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

getName() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getName() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry

getName() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Return the name of this theme, "Ocean".

getName() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

getName() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Return the name of this theme, "Ocean".

getNameAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

getNameOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns the name of a data type

getNameOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Returns the name of an algorithm

getNativeMeasurementEnumValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Returns the integer value that describes which measurements to extract

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression

getNativeValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

getNativeValue() - Method in enum org.hkijena.jipipe.utils.ListSelectionMode

getNeighborhood() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getNewInstanceGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

getNextFillPaint() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier

getNextPaint() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier

getNode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getNode(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

getNode() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getNode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getNodeCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getNodeGroup() - Method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

getNodeId() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

getNodeInfo() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

getNodeInfo() - Method in class org.hkijena.jipipe.JIPipe.NodeInfoRegisteredEvent

getNodeInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

getNodeInfo() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

getNodeInfos() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getNodeInfosFromClass(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns all node infos that create a node of the specified class

getNodeRegistry() - Method in class org.hkijena.jipipe.JIPipe

getNodeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getNodes() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

getNodes() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

getNodes() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

getNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all algorithms

getNodes() - Static method in class org.hkijena.jipipe.JIPipe

getNodesAfter(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNodesOfCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets all algorithms of specified category

getNodeUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getNodeUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNodeUIsFor(Set<T>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getNonParameterInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

getNumberOfBins() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getNumScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getNumSlices() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

getNumThreads() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getNumThreads() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getNumThreads() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getObjectMapper() - Static method in class org.hkijena.jipipe.utils.JsonUtils

getOffset() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

getOpenInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all input slots that do not have data set.

getOpenTabs() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

getOpenWindows() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getOperands() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

getOperatingSystem() - Static method in class org.hkijena.ijupdatercli.Main

getOperation() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

getOperation() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getOperations() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

getOperator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getOptionalParameter() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getOrCreateColumnIndex(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns the index of an existing column or creates a new column if it does not exist

getOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation

getOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

getOrder() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

getOriginalAnnotations(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets the original annotations of given slot

getOriginalAnnotations(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Gets the original annotations of given slot

getOriginalAnnotations(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets the original annotations of given slot

getOriginalAnnotations(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Gets the original annotations of given slot

getOriginalBorderSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getOriginalName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Gets the name in the original graph Returns null if resolve() is unsuccessful

getOriginalSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getOut() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

getOutput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getOutputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getOutputDimension() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

getOutputDimension() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

getOutputDirectory() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.JsonData

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.StringData

The extension that is generated by the output function

getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.XMLData

getOutputFile() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getOutputFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getOutputNode() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getOutputPath() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

getOutputPath() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

getOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the output slot with the specified name.

getOutputSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent

getOutputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets all output slot instances

getOutputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getOutputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

getOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

getOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns all output slots ordered by the slot order

getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

getOutputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns general output data.

getOutputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getOutputTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI

getOutputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

getOutputType() - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter

getOutsideColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getOverlapFilter() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

getOverlapFilter() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getOverlapFilterMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

getOverlapFilterMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

getParallelizationBatchSize() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

Returns how many threads the actual algorithm requires.

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Gets a parameter by its key

getParameter(JIPipeParameterCollection, String, Class<T>) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Gets a parameter from a JIPipeParameterCollection

getParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getParameter(Class<T>) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets or creates a parameter instance.

getParameterAccess() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets the parameter accessor

getParameterAnnotationsPrefix() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

getParameterClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

getParameterCollection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent

getParameterCollection() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

getParameterData() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

getParameterHelp() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

getParameterHelp() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getParameterHolder() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Gets the object that holds the parameter

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

Returns info about the parameter at index

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator

Returns info about the parameter at index (left to right)

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction

Returns info about the parameter at index

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator

getParameterKeyAssignments() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm

getParameterReferenceGroups() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

getParameters() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

getParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

getParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

getParameters() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection

Returns all parameters Please note that those parameters must be sourced in this collection.

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getParameters(JIPipeParameterCollection) - Static method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Accesses the parameters of a collection

getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getParameters() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

getParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getParametersByPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Returns the parameter slot if enabled

getParameterSlotAlgorithmSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getParametersUI() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI

getParameterTable() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

getParameterTree() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Extracts all parameters as tree

getParameterTypeRegistry() - Method in class org.hkijena.jipipe.JIPipe

getParameterTypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getParameterTypes() - Static method in class org.hkijena.jipipe.JIPipe

getParent() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

getParent() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getParent() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getParent() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getParentPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

getPassword() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

getPassword() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter

getPath() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

getPath() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

getPath() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

getPath() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

getPath() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getPathMode() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

getPathMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor

getPathName() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

getPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

getPercentile() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

getPersistence() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getPersistence() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Controls the persistence of the parameter

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent

getPipelineParameters() - Method in class org.hkijena.jipipe.api.JIPipeProject

Returns the global parameters for this pipeline

getPixelCoordinate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas.PixelHoverEvent

getPlaneIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

getPlaneNumberAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getPlotBuilderUI() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getPlotType() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

getPlotTypeParameters() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

getPluginDirectory() - Static method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

getPluginManager() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

getPluginResource(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

Gets a plugin-internal resource as URL

getPluginResource(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin-internal resource as URL

getPluginResourceAsStream(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

Gets a plugin-internal resource as Stream

getPluginResourceAsStream(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin-internal resource as Stream

getPluginResourceAsString(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

Gets a plugin resource as string

getPluginResourceAsString(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets a plugin resource as string

getPluginService() - Method in class org.hkijena.jipipe.JIPipe

getPositionC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getPositionT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getPositionX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getPositionY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getPositionZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getPositionZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getPredecessorAlgorithms(JIPipeGraphNode, List<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all predecessor algorithms of an algorithm.

getPredecessorStates() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

getPreferredSize() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getPreferredSize() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getPreferredSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getPrefix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getPreviewHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

getPreviewSize() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

getPreviewWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

getPrimary1() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the primary 1 color.

getPrimary1() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the primary 1 color.

getPrimary1() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the primary 1 color.

getPrimary2() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the primary 2 color.

getPrimary2() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the primary 2 color.

getPrimary2() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the primary 2 color.

getPrimary3() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the primary 3 color.

getPrimary3() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the primary 3 color.

getPrimary3() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the primary 3 color.

getPriority() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getPriority() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns the priority for (de)serializing this parameter.

getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

getProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

getProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent

getProgress() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus

getProgressInfo() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getProgressInfo() - Method in class org.hkijena.jipipe.api.JIPipeRun

getProgressInfo() - Method in interface org.hkijena.jipipe.api.JIPipeRunnable

The info object that allows communication with the run

getProgressInfo() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getProgressInfo() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

getProject() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getProject() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

getProject() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

getProject() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

getProject() - Method in class org.hkijena.jipipe.api.JIPipeRun

getProject() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

getProject() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

getProjectAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getProjectCompartmentId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

getProjectCompartmentTooltip(JIPipeProjectCompartment, JIPipeGraph) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for a project compartment

getProjectFile() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

getProjectId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

getProjectIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource

getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getProjectNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProjectTemplate() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getProjectType() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

getProjectType() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getProjectWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

getPropertyFile() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getPropertyPanel() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getRadiusIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

getRankAt(int) - Method in class org.hkijena.jipipe.utils.RankedData

getRankingFunction() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getRatio() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getRawNode() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Gets the raw property files Json node

getRealTimeRunDelay() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getRecentJsonExtensionProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getRecentProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

getRectangle(Point, int, int) - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Reconstructs the rectangle from a location anchored inside

getRectangleCoordinates(Rectangle) - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Gets the coordinate inside given rectangle

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

getRedoLocation() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

getReferenceColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getReferenceImage(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Extracts or generates the reference image.

getReferencePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getReferenceSlice() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

getRegexString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getRegisteredAdapters() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

getRegisteredCategories() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all registered data types

getRegisteredExpressionFunctions() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

Registered expression functions.

getRegisteredExtensionIds() - Method in class org.hkijena.jipipe.JIPipe

getRegisteredExtensionIds() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getRegisteredExtensions() - Method in class org.hkijena.jipipe.JIPipe

getRegisteredExtensions() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getRegisteredImporterUIs() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

getRegisteredMenuExtensions() - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

getRegisteredNodeClasses() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getRegisteredNodeInfos() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Gets the set of all known algorithms

getRegisteredParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

getRegisteredSheets() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

getRegisteredSources() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getRegisteredTableColumnOperations() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

The registered column operations.

getRegistry() - Method in class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent

getRegistry() - Method in class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent

getRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getRegistry() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Returns the registry

getRegistry() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getRelativeLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getRelativeX() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

getRelativeY() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

getRelevantParameterKeys() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

Finds the parameter keys that are relevant according to the current anchor setting The anchor key 'anchor' is not part of the result.

getRelevantParameters() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

getRenderedHTML() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument

getRenderedHTML() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument

getRendererComponent(JXMultiThumbSlider) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

getReport() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

getResolution() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getResourceBasePath() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

getResourceBasePath() - Static method in class org.hkijena.jipipe.utils.ResourceUtils

getResourcePath() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

getResourcePath(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

Gets an internal resource.

getResourcePath(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Gets an internal resource.

getRight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getRightX() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

getRoi() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

GetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

GetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

Instantiates a new node type.

GetRoiImageAlgorithm(GetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

Instantiates a new node type.

getRoiName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

getRoiName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

getRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

getRollingBallRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

getRoot() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

getRotateTemplate() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getRotation() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getRotationDirection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

getRotations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

getRotationStep() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getRow() - Method in class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource

getRow(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Returns the location

getRow() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource

getRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getRow(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

getRow() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

getRow() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the data row that is displayed

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRowAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the data entry as string

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRowAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the data entry as string

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowComparator(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a comparator for ResultsTableData rows that is equivalent to the column order in this object

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getRowCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getRowCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

getRowCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getRowCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getRowGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getRowMergingStrategy() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

getRowNormalization() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

getRows(Collection<Integer>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

getRows() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns the number of rows that are existing (not generated)

getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

getRows() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

getRowStorageFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getRowStorageFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getRowStorageFolder(JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Returns the folder where the data is stored

getRowStorageFolder() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the folder where the data is stored

getRowStoragePath(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the storage path of a data row from a result.

getRowStoragePath() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource

getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent

getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent

getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent

getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent

getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

getRun() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI

getRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent

getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent

getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent

getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent

getRunSettings() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getSavePath() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

getScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

getScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

getScaleFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getScaleFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

getScheduledRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

getScrollPane() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getScrollPane() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getScrollPane() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

getScrollPane() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

getScrollPane() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getScrollPane() - Method in class org.hkijena.jipipe.ui.components.FormPanel

getScrollPane() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getScrollPane() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getScrollPane() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getSearchField() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

getSearchStrings() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

Returns the search strings according to the current text

getSecondary1() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the secondary 1 color.

getSecondary1() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the secondary 1 color.

getSecondary1() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the secondary 1 color.

getSecondary2() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the secondary 2 color.

getSecondary2() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the secondary 2 color.

getSecondary2() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the secondary 2 color.

getSecondary3() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Returns the secondary 3 color.

getSecondary3() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

Returns the secondary 3 color.

getSecondary3() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Returns the secondary 3 color.

getSecondColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

getSelectColorPrompt() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

getSelectedCalibration() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getSelectedColor() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

getSelectedDataTypes() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

getSelectedIcon() - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

getSelectedInfos() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

getSelectedItem() - Method in class org.hkijena.jipipe.ui.components.SearchBox

getSelectedNode() - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog

getSelectedNodes() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getSelectedSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

getSelectedSources() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Returns the currently selected sources.

getSelectedTab() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

getSelectedTemplate() - Method in class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog

getSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

getSelectionByDialog(Component, Collection<T>, Collection<T>, String, String, ListCellRenderer<T>, ListSelectionMode) - Static method in class org.hkijena.jipipe.utils.UIUtils

Lets the user select one or multiple items from a list

getSeparatorString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

getSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getSeriesBuilders() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

getSeriesToImport() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getServer() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

getSettings(String, Class<T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Gets the settings instance with given ID

getSettings() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getSettings() - Static method in class org.hkijena.jipipe.JIPipe

getSettingsRegistry() - Method in class org.hkijena.jipipe.JIPipe

getSettingsRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry

getShortKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getShortKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns a short form of the ID used, for example to generate a parameter string.

getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getShortName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry

getSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma1z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigma2z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSigmaZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

Returns the signature of the function

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction

getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction

getSingletonTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getSlice() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getSlice(TableColumn, List<Integer>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns a new table column that contains the selected rows in the provided order

getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

getSlicesToImport() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

getSlicingMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

getSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource

getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

Gets the slot that defined the specified row

getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

Gets the slot that defined the specified row

getSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource

getSlot() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getSlot() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getSlot() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

getSlot() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Returns the data slot

getSlotConfiguration() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Gets the slot configuration

getSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getSlotDataType() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

getSlotEdges() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns all edges as set of edges

getSlotInstanceTooltip(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a tooltip for an JIPipeDataSlot

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Returns the UI location of a data slot that is located in the graph

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Returns the location of a slot in relative coordinates

getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

getSlotName() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getSlotName() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

getSlotNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

getSlots() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

getSlots() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

getSlots() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

getSlotTable(Collection<JIPipeDataSlotInfo>) - Static method in class org.hkijena.jipipe.utils.TooltipUtils

Creates a slot definition table.

getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

getSmallerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getSmallerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

getSortedAndFilteredData(Collection<T>, Function<T, String>, RankingFunction<T>, String[]) - Static method in class org.hkijena.jipipe.utils.RankedData

Creates a list of sorted ranked data

getSortedList(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Gets name sorted list of data classes

getSortedList(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets a sorted list of algorithms

getSortOrderList() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

getSortOrderList() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

getSortOrderList() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

getSource() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getSource() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getSource() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

getSource() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent

getSource() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent

getSource() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getSource() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Gets the object that holds the parameter

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEvent

getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getSource() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getSource() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

getSourceActions(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler

getSourceColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getSourceDocumentation(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source documentation

getSourceDocumentationName(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source name

getSourceKey(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets unique source key

getSourceNode(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Returns the node of a collection

getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the source that registered that data type

getSourceOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns the source that registered that data type

getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns the source of a registered algorithm

getSources() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getSourceSlots(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

If exists, returns the output slots that provide data for the input slot Returns and empty list if there are none

getSourceUIOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source UI order

getSourceVisibility(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source visibility

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

getSplashIcons() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

getSplashIcons() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Returns icons that will be displayed in the splash screen.

getSplitCharacter() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getSplitPickedIndex() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

getStackAssignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

getStackIndex(int, int, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Stack index (one-based)

getStackIndex(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

getStackIndexInSingleChannel(ImagePlus, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

getStackOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getStackOrder() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getStackPosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

The overall stack position of the ROIs.

getStackSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getStartAngleDegrees() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

getStartSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStartZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

getStateId() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

getStateId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Returns a unique identifier that represents the state of the algorithm.

getStatistics() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

getStatistics(List<ResultsTableData.IntegratingColumnOperationEntry>, Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Generates a new table that contains statistics.

getStatisticsParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

getStatus() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

getStatus() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent

getStatus() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent

getStopSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

getStorageDataTable() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Only valid for slots generated by a JIPipeRun.

getStorageDataTablePath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Only valid for slots generated by a JIPipeRun.

getStoragePath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the storage path that is used during running the algorithm for saving the results This is not used during project creation

getStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

The storage path is used in JIPipeRun to indicate where output data is written This is only used internally

getStringFromClipboard() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Returns a string from clipboard or an empty string

getStringFromClipboard() - Static method in class org.hkijena.jipipe.utils.UIUtils

Returns a string from clipboard or an empty string

getStringRepresentation() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

getStringValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

getSubPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

getSuffix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

getSuggestedName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

getSupportedImageJDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns all supported ImageJ data types

getSupportedJIPipeDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns all supported JIPipe data types

getT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

getTabbedPane() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabComponent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getTabContaining(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Returns the tab that contains the specified content

getTabCount() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabLabelShiftX(int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

Overridden to do nothing for the Java L&F.

getTabLabelShiftY(int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

Overridden to do nothing for the Java L&F.

getTable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getTable() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer

getTableColumnOperationsOfType(Class<? extends ColumnOperation>) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

Returns all operations that are assignable to the filter class

getTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

getTableOperations() - Static method in class org.hkijena.jipipe.JIPipe

getTables() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

getTabRunOverlay(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

getTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

getTabsContaining(Class<? extends Component>) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Returns all tabs that contain components of provided type or components that inherit from it

getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getTagAnnotations(MetadataFacility, SecurityContext, DataObject) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

getTarget() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent

getTarget() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent

getTarget() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction

getTargetColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

getTargetGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

getTargetSlots(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns the list of input slots that are provided by the source slot Returns an empty set if the target is an input or no slot exists

getTargetSlots() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

getTaskLabel() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

getTaskLabel() - Method in class org.hkijena.jipipe.api.JIPipeRun

getTaskLabel() - Method in interface org.hkijena.jipipe.api.JIPipeRunnable

A name for the runnable

getTaskLabel() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

getTaskLabel() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

getTempDirectory() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

getTempDirectory() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

getTemplate() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction

Returns a template function that can be used to get users started

getTemplate() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry

getTemplateDescription() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

getTemplateMatchingMethod() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

getTemporaryDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

getTemporaryDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

getTestBenchRun() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

getText() - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField

getText() - Method in class org.hkijena.jipipe.ui.components.FancyTextField

getText() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

getTextField() - Method in class org.hkijena.jipipe.ui.components.FancyTextField

getTextField() - Method in class org.hkijena.jipipe.ui.components.SearchTextField

getTheme() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

getThemeFromRawSettings() - Static method in class org.hkijena.jipipe.utils.UIUtils

getThreadPool() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

getThreads() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

getThreshold_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

getThumbRendererComponent(JXMultiThumbSlider, int, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

getTightenedTo(PointRange, Point) - Static method in class org.hkijena.jipipe.utils.PointRange

Gets a point within the range that is closest to the target point

getTightenedTo(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange

Gets a point within the range that is closest to the target point range

getTimePerFrame() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getTimer() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getTimestamp() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

getTitle() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getTitle() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

getTitleFilterExpression() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

getTitleFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

getTitleLabel() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel

getTitleLabel() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

getTokenList(Segment, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker

getToMaskAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

getToolBar() - Method in class org.hkijena.jipipe.ui.components.PlotReader

getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo

getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo

getTooltip(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo

Extracts a custom tooltip for the enum value

getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo

getTop() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getTrack() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTranslateZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

getTree() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

getTree() - Method in class org.hkijena.jipipe.ui.components.JIPipeProjectOutputTreePanel

getTree() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

getTree() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer

getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer

getTrueDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

getTypes() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo

getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent

getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent

getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI.AlgorithmEvent

getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

getUiExcludedSubParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getUIFor(ImageJDatatypeImporter) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Generates a UI for the importer

getUIForResultSlot(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Generates a UI for a result data slot

getUIOrder() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

getUIOrder() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Categories are sorted by this value (lower value = first)

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getUIOrder() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Controls how the parameter is ordered within the user interface

getUiOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getUISourceOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets source UI order

getUnconnectedSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

getUnhiddenRegisteredDataTypes() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns a collection of all unhidden slot data types

getUnhiddenRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Gets all data types that are not hidden

getUniqueKey(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Gets the unique key of an parameter access

getUniqueStringByDialog(Component, String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils

Continuously asks for an unique string

getUpdateSiteDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

getUpdateSiteDependenciesParameter() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

getUpdateSitesToAddAndActivate() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

getUploadedAnnotationsFilter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

getUrl() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

getUrls() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

getUseOutlinePaintForWhiskers() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that, if true, causes the whiskers to be drawn using the series outline paint.

getUserHow() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserHow() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserHow() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

getUserSelectedMethod() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

getUserWhat() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhat() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserWhat() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserWhere() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhere() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getUserWhy() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException

getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

getUserWhy() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

getUserWhy() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry

getValue() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

getValue(String, Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Gets a parameter value

getValue() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getValue() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm

getValue() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstant

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Returns the current value

getValue() - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource

getValue() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

getValue() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

getValue() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

getValue() - Method in class org.hkijena.jipipe.utils.MacroSetting

getValueAsDouble(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as double

getValueAsDouble(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as double

getValueAsString(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as string

getValueAsString(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns a table value as string

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

getValueAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getValueAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

getValueClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

getValueReplacement() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

getValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

getValueToReplace() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

GetVariableFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GetVariableFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.GreyscalePixel2DExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.PixelCoordinate2DExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpressionVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpressionVariableSource

getVariables(JIPipeParameterAccess) - Method in interface org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariableSource

Returns the list of known variables for the user interface.

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpressionVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.UndefinedExpressionParameterVariableSource

getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.WindowQueryExpressionParameterVariableSource

getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

getViewMode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomViewPort.ZoomChangedEvent

getVirtualData(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Gets the virtual data container at given row

getVisibility() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

getVisibility() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Returns if the parameter should be visible to users or only stored to JSON

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

getVisibleCompartments() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the list of additional compartments this algorithm is visible in.

getVisibleParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

getWebsite() - Method in class org.hkijena.jipipe.api.JIPipeMetadata

getWebsite() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

getWebsite() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

getWeight() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

getWhiskerWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the width of the whiskers as fraction of the bar width.

getWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

getWidth() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

getWidthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

getWindow() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowClosedEvent

getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowOpenedEvent

getWindow() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

getWindow() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

Returns the window

getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

getWordsToHighlight() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker

getWorkbench() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

getWorkbench() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

getWorkbench() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension

getWorkbench() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension

getWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel

getWorkDirectory() - Method in class org.hkijena.jipipe.api.JIPipeProject

Gets the folder where the project is currently working in

getWorkDirectory() - Method in class org.hkijena.jipipe.api.JIPipeProject.WorkDirectoryChangedEvent

getWorkDirectory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns the current work directory of this algorithm.

getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent

getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent

getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent

getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent

getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent

getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent

getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent

getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent

getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

getWrappedIcon() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getxAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getxAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getXyAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

getXyAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getyAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getyAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

getZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

getzAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

getZoom() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

getZoom() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort

getZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

GlobStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

GlobStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction

GradientStop(Color, float) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop

GraphAutoLayout - Enum in org.hkijena.jipipe.ui.grapheditor.layout

GraphAutoLayoutMethod - Interface in org.hkijena.jipipe.ui.grapheditor.layout

GraphCanvasUpdatedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent

GraphChangedEvent(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.GraphChangedEvent

GraphChangedHistorySnapshot - Class in org.hkijena.jipipe.api.history

GraphChangedHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

GraphCompartmentCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

GraphCompartmentCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

GraphCompartmentPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

GraphCompartmentPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

GraphEditorToolBarButtonExtension - Class in org.hkijena.jipipe.ui.extension

GraphEditorToolBarButtonExtension(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension

Creates a new instance

graphEditorToolBarButtonExtensionsFor(JIPipeGraphEditorUI) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

GraphEditorUISettings - Class in org.hkijena.jipipe.extensions.settings

All settings for JIPipeGraphEditorUI

GraphEditorUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

GraphHistoryChangedEvent(JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.api.history.JIPipeGraphHistory.GraphHistoryChangedEvent

GraphNodeParameterCollectionReference - Class in org.hkijena.jipipe.api.grouping.parameters

GraphNodeParameterCollectionReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterCollectionReference

GraphNodeParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for GraphNodeParameters

GraphNodeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

Creates new instance

GraphNodeParameterReference - Class in org.hkijena.jipipe.api.grouping.parameters

References a parameter in a graph

GraphNodeParameterReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Creates a new empty instance

GraphNodeParameterReference(GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Creates a copy

GraphNodeParameterReference(JIPipeParameterAccess, JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Instantiates with an existing access within a tree

GraphNodeParameterReferenceAccess - Class in org.hkijena.jipipe.api.grouping.parameters

A parameter access that references to another one, but hides the source

GraphNodeParameterReferenceAccess(GraphNodeParameterReference, JIPipeParameterTree, JIPipeParameterCollection, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

Creates a new instance

GraphNodeParameterReferenceAccessGroup - Class in org.hkijena.jipipe.api.grouping.parameters

Contains GraphNodeParameterReferenceAccess

GraphNodeParameterReferenceAccessGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup

Creates a new instance

GraphNodeParameterReferenceAccessGroupList - Class in org.hkijena.jipipe.api.grouping.parameters

Contains GraphNodeParameterReferenceAccess

GraphNodeParameterReferenceAccessGroupList(GraphNodeParameters, JIPipeParameterTree, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList

Creates a new instance

GraphNodeParameterReferenceGroup - Class in org.hkijena.jipipe.api.grouping.parameters

A list of GraphNodeParameterReference.

GraphNodeParameterReferenceGroup() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Creates a new instance

GraphNodeParameterReferenceGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Creates a copy

GraphNodeParameterReferenceGroupUI - Class in org.hkijena.jipipe.api.grouping.parameters

UI for GraphNodeParameterReferenceGroup

GraphNodeParameterReferenceGroupUI(GraphNodeParametersUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI

GraphNodeParameterReferenceGroupUI.GroupMetadataEditor - Class in org.hkijena.jipipe.api.grouping.parameters

Edits name and description of a GraphNodeParameterReferenceGroup

GraphNodeParameterReferenceUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for GraphNodeParameterReference

GraphNodeParameterReferenceUI(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceUI

Creates a new instance

GraphNodeParameters - Class in org.hkijena.jipipe.api.grouping.parameters

Contains a list of GraphNodeParameterReferenceGroup and GraphNodeParameterCollectionReference Stores references to parameters within an JIPipeGraph

GraphNodeParameters() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Creates a new instance

GraphNodeParameters(GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Makes a copy

GraphNodeParametersUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor component for GraphNodeParameters

GraphNodeParametersUI(JIPipeWorkbench, GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

GraphUtils - Class in org.hkijena.jipipe.utils

Helper class for graph

GraphWrapperAlgorithm - Class in org.hkijena.jipipe.api.grouping

An algorithm that wraps another algorithm graph

GraphWrapperAlgorithm(JIPipeNodeInfo, JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

GraphWrapperAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Copies the algorithm

GraphWrapperAlgorithmInput - Class in org.hkijena.jipipe.api.grouping

GraphWrapperAlgorithmInput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

GraphWrapperAlgorithmInput(GraphWrapperAlgorithmInput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

GraphWrapperAlgorithmOutput - Class in org.hkijena.jipipe.api.grouping

GraphWrapperAlgorithmOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

GraphWrapperAlgorithmOutput(GraphWrapperAlgorithmOutput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

GreyscalePixel2DExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Variable source that allows to address x, y, and value

GreyscalePixel2DExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.GreyscalePixel2DExpressionParameterVariableSource

GreyscalePixelsGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Algorithm that generates ResultsTableData as histogram

GreyscalePixelsGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

Creates a new instance

GreyscalePixelsGenerator(GreyscalePixelsGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

Creates a copy

gridToRealLocation(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

gridToRealSize(Dimension, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

groupByMenuPath(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Groups the data types by their menu path

groupByMenuPaths(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Gets the registered algorithms, grouped by their menu paths

groupByPosition(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Groups the ROI by their image positions

groupByReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Groups the ROI by their reference image

GroupHeaderPanel(String, Icon) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel

GroupHeaderPanel(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

GroupingExtension - Class in org.hkijena.jipipe.api.grouping

Extension for anything that is related to GraphWrapperAlgorithm

GroupingExtension() - Constructor for class org.hkijena.jipipe.api.grouping.GroupingExtension

GroupMetadataEditor(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI.GroupMetadataEditor

GroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

GroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

H

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotRowUI

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

Action that is triggered when the user double-clicks on the entry in the table

hasAttachmentOfType(Class<?>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Returns true if there is an attachment of given type

hasDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the specified data type class is registered

hasDatatypeWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if there is a data type with given ID

hasDefaultConstructor(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Returns true if the class has a default constructor

hasEditorFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Returns true if there is an editor for the parameter

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

hashCode() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

hashCode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

hasInputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns true if there is an input slot with name

hasInputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Return true if there is an input slot with given name

hasInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if the algorithm contains an input slot with given name.

hasNodeInfoWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Returns true if the algorithm ID already exists

hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Returns true if there is an output slot with name

hasOutputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Return true if there is an output slot with given name

hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if the algorithm contains an output slot with given name.

Hessian2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around EDM

Hessian2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

Instantiates a new node type.

Hessian2DAlgorithm(Hessian2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

Instantiates a new node type.

HessianSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hessian

HessianSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

HessianSegmentation2DAlgorithm(HessianSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

Copies the algorithm

hexStringToColor(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Converts a hex color string #RRGGBB or #RRGGBBAA to a color

hexStringToColor(String) - Static method in class org.hkijena.jipipe.utils.ColorUtils

Converts a hex color string #RRGGBB or #RRGGBBAA to a color

hideSplash() - Method in class org.hkijena.jipipe.ui.components.SplashScreen

HistogramGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Algorithm that generates ResultsTableData as histogram

HistogramGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

Creates a new instance

HistogramGenerator(HistogramGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

Creates a copy

HistogramGenerator.MultiChannelMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

Available modes that determine which greyscale value is generated if a multi-channel image is provided

HistogramPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data to generate a histogram plot

HistogramPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

Creates a new instance

HistogramPlotData(HistogramPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

Creates a copy

HistogramPlotData.HistogramType_ - Enum in org.hkijena.jipipe.extensions.plots.datatypes

Available histogram types

Hough_Circle - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils

Hough_Circle() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

HoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Segments using a Hough circle transform

HoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

HoughSegmentation2DAlgorithm(HoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

Copies the algorithm

HoverHelpEvent(MarkdownDocument) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.HoverHelpEvent

Creates a new instance

HoverHelpEvent(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent

Creates a new instance

HyperbolicCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

HyperbolicCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation

HyperbolicSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

HyperbolicSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation

HyperbolicTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

HyperbolicTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation

HyperstackDimension - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util

HyperstackDimensionPairParameter - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

HyperstackDimensionPairParameter() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter

HyperstackDimensionPairParameter(HyperstackDimension, HyperstackDimension) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter

HyperstackDimensionPairParameter(PairParameter<HyperstackDimension, HyperstackDimension>) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter

HyperstackDimensionPairParameter.List - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

I

ICON_FROM_RESOURCES_CACHE - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

ICON_FROM_RESOURCES_CACHE - Static variable in class org.hkijena.jipipe.utils.UIUtils

ID - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

ID - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

ID - Static variable in class org.hkijena.jipipe.extensions.omero.OMEROSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.DataExporterSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

ID - Static variable in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

IfElseFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

IfElseFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction

IGNORE_CUSTOM - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to ignore all custom parameters

IGNORE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Whether to ignore all reflection parameters

IJProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater

Adapter between JIPipe and ImageJ progress implementations

IJProgressAdapter() - Constructor for class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

IlluminationCorrection2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

Applies illumination correction

IlluminationCorrection2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

IlluminationCorrection2DAlgorithm(IlluminationCorrection2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

Copies the algorithm

IMAGE_TYPES - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_COLOR_RGB - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_16U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_32F - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

IMAGE_TYPES_GREYSCALE_MASK - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

ImageCalculator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around ImageProcessor

ImageCalculator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

Instantiates a new node type.

ImageCalculator2DAlgorithm(ImageCalculator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

Instantiates a new node type.

ImageCalculator2DAlgorithm.Operand - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Determines the order of input images

ImageCalculator2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Available math operations

ImageDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImageDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataPreview

Creates a new renderer

ImageFromMatrix2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

Wrapper around Convolver

ImageFromMatrix2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

Instantiates a new node type.

ImageFromMatrix2DAlgorithm(ImageFromMatrix2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

Creates a copy

ImageJAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.imagejalgorithms

Extension that adds ImageJ2 algorithms

ImageJAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

ImageJCalibrationMode - Enum in org.hkijena.jipipe.utils

ImageJDatatypeAdapter - Interface in org.hkijena.jipipe.api.compat

Interface that contains functions that allow conversion between JIPipe and ImageJ data type

ImageJDatatypeImporter - Class in org.hkijena.jipipe.api.compat

Runs a ImageJDatatypeAdapter import operation.

ImageJDatatypeImporter(ImageJDatatypeAdapter) - Constructor for class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

ImageJDatatypeImporterUI - Class in org.hkijena.jipipe.ui.compat

User interface around an ImageJDatatypeAdapter that

ImageJDatatypeImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI

ImageJDataTypesExtension - Class in org.hkijena.jipipe.extensions.imagejdatatypes

Provides ImageJ data types

ImageJDataTypesExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

ImageJDataTypesSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes

ImageJDataTypesSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

ImageJMacro - Class in org.hkijena.jipipe.extensions.parameters.scripts

Encapsulates ImageJ macro code to be detected by the parameter system

ImageJMacro() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

ImageJMacro(ImageJMacro) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro

ImageJUtils - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Utility functions for ImageJ

ImageJUtils.GradientStop - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

ImagePlus2DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

8-bit color 2D image

ImagePlus2DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData

ImagePlus2DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

Colored 2D image

ImagePlus2DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData

ImagePlus2DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

RGB colored 2D image

ImagePlus2DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData

ImagePlus2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2

2D image

ImagePlus2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

ImagePlus2DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

16-bit greyscale 2D image

ImagePlus2DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData

ImagePlus2DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

32 bit float greyscale 2D image

ImagePlus2DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData

ImagePlus2DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

8-bit greyscale 2D image

ImagePlus2DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData

ImagePlus2DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

Greyscale 2D image

ImagePlus2DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData

ImagePlus2DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

8-bit mask 2D image

ImagePlus2DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData

ImagePlus3DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

8-bit color 3D image

ImagePlus3DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData

ImagePlus3DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

Color 3D image

ImagePlus3DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData

ImagePlus3DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

RGB color 3D image

ImagePlus3DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData

ImagePlus3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3

3D image

ImagePlus3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

ImagePlus3DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

16-bit greyscale 3D image

ImagePlus3DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData

ImagePlus3DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

32-bit floating point greyscale 3D image

ImagePlus3DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData

ImagePlus3DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

8-bit greyscale 3D image

ImagePlus3DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData

ImagePlus3DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

Greyscale 3D image

ImagePlus3DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData

ImagePlus3DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

8-bit mask 3D image

ImagePlus3DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData

ImagePlus4DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

8-bit color 4D image

ImagePlus4DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData

ImagePlus4DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

Color 4D image

ImagePlus4DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData

ImagePlus4DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

RGB color 4D image

ImagePlus4DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData

ImagePlus4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4

4D image

ImagePlus4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

ImagePlus4DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

16-bit greyscale 4D image

ImagePlus4DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData

ImagePlus4DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

32-bit floating point greyscale 4D image

ImagePlus4DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData

ImagePlus4DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

8-bit greyscale 4D image

ImagePlus4DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData

ImagePlus4DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

Greyscale 4D image

ImagePlus4DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData

ImagePlus4DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

Mask 4D image

ImagePlus4DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData

ImagePlus5DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

8-bit color 5D image

ImagePlus5DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData

ImagePlus5DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

Color 5D image

ImagePlus5DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData

ImagePlus5DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

RGB color 5D image

ImagePlus5DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData

ImagePlus5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5

5D image

ImagePlus5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

ImagePlus5DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

16-bit greyscale 5D image

ImagePlus5DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData

ImagePlus5DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

32-bit floating point greyscale image

ImagePlus5DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData

ImagePlus5DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

8-bit greyscale 5D image

ImagePlus5DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData

ImagePlus5DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

Greyscale 5D image

ImagePlus5DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData

ImagePlus5DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

Mask 5D image

ImagePlus5DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData

ImagePlusColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

8-bit color image without dimension.

ImagePlusColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

ImagePlusColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

Colored image without dimension.

ImagePlusColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

ImagePlusColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

RGB colored image without dimension.

ImagePlusColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

ImagePlusData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

ImageJ image

ImagePlusData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

ImagePlusDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Imports an ImagePlus

ImagePlusDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImagePlusDataImporterUI

ImagePlusDataImportIntoImageJOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImagePlusDataImportIntoImageJOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

ImagePlusDataImportIntoJIPipeOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImagePlusDataImportIntoJIPipeOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

ImagePlusDataToCLIJImageDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes

Converter from ImagePlusData to CLIJImageData

ImagePlusDataToCLIJImageDataConverter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter

ImagePlusFFT2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

2D image in frequency space

ImagePlusFFT2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData

Creates a new instance

ImagePlusFFT3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

3D image in frequency space

ImagePlusFFT3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData

Creates a new instance

ImagePlusFFT4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

4D image in frequency space

ImagePlusFFT4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData

Creates a new instance

ImagePlusFFT5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

5D image in frequency space

ImagePlusFFT5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData

Creates a new instance

ImagePlusFFTData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

Image in frequency space

ImagePlusFFTData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData

Creates a new instance

ImagePlusFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Loads an image data from a file via IJ.openFile()

ImagePlusFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

ImagePlusFromFile(ImagePlusFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

Copies the algorithm

ImagePlusFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ImagePlusFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

ImagePlusFromGUI(ImagePlusFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

ImagePlusGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

16-bit greyscale image without dimension.

ImagePlusGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

ImagePlusGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

32 bit float greyscale image without dimension.

ImagePlusGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

ImagePlusGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

8-bit greyscale image without dimension.

ImagePlusGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

ImagePlusGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

Greyscale image without dimension.

ImagePlusGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

ImagePlusGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

8-bit mask without dimension.

ImagePlusGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData

ImagePlusResultImportRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImagePlusResultImportRun(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

ImagePlusToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ImagePlusToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

ImagePlusToGUI(ImagePlusToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

ImagePlusToOMEImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

ImagePlusToOMEImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter

ImagePropertiesToAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Adds data annotations that contain the image properties

ImagePropertiesToAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

Creates a new instance

ImagePropertiesToAnnotationAlgorithm(ImagePropertiesToAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

Creates a copy

ImageQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

ImageQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource

ImageRoiProcessorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

An algorithm that processes ROIListData to or ROIListData and ImagePlusData to the output data

ImageRoiProcessorAlgorithm(JIPipeNodeInfo, Class<? extends JIPipeData>, String) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Creates a new instance

ImageRoiProcessorAlgorithm(ImageRoiProcessorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

Creates a copy

ImageSliceIndex - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Helper class that identifies an image slice.

ImageSliceIndex(int, int, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

Initializes a slice index

ImageSliceIndex() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

Initializes a slice index where all values are -1

ImageSliceIndex(ImageSliceIndex) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

Creates a copy

ImagesNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

ImagesNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

ImageStackFromFolder - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

Loads an image data from a file via IJ.openFile()

ImageStackFromFolder(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

ImageStackFromFolder(ImageStackFromFolder) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

Copies the algorithm

ImageStatisticsSetParameter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A DynamicSetParameter that contains image statistics measurements.

ImageStatisticsSetParameter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageStatisticsSetParameter(ImageStatisticsSetParameter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageStatisticsSetParameter(Set<Measurement>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

ImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Converts ImageJ data type into each other

ImageTypeConverter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

Creates a new instance

ImageTypeConverter(ImageTypeConverter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

Copies the algorithm

ImageViewerLUTEditor - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

Based on JXGradientChooser

ImageViewerLUTEditor(ImageViewerPanel, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

ImageViewerPanel - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanel() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

ImageViewerPanelCanvas - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanelCanvas() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

ImageViewerPanelCanvas.PixelHoverEvent - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanelDisplayRangeControl - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanelDisplayRangeControl(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

ImageViewerPanelDisplayRangeControl.DisplayRangeStop - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanelDisplayRangeControl.ThumbRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerPanelDisplayRangeControl.TrackRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerStackExporterRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerStackExporterRun(ImageViewerPanel, Path, String, String) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

ImageViewerVideoExporterRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerVideoExporterRun(ImageViewerPanel, Path, ImageSliceIndex, HyperstackDimension, int, AVICompression, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

ImageViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

ImageViewerWindow() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

ImageViewerWindow(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

ImgPlusDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ImagePlus and ImagePlusData

ImgPlusDataImageJAdapter(Class<? extends ImagePlusData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

ImplicitImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

An implicit converter between ImagePlusData types

ImplicitImageTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter

ImplicitPathTypeConverter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Converts between the PathData types (non-trivial conversions)

ImplicitPathTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter

ImplicitResultsTableDataConverter - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Converts ResultsTableData to AnnotationTableData

ImplicitResultsTableDataConverter() - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter

ImportCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

ImportCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

ImportData - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

ImportData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

ImportData(ImportData) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

importData(Path, Class<T>) - Static method in class org.hkijena.jipipe.JIPipe

Imports data of given data type from its output folder.

importData(PlotDataSeries) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Adds data into the data storage

importData(TableModel, String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Imports data from a table model

importExistingPlot(PlotData) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Imports an existing plot data into this builder.

importFrom(Path) - Static method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Loads Roi from a path that contains a zip/roi file

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

importFrom(Path, Class<T>) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.JsonData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.StringData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.XMLData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData

importFromImageJ(String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter

Imports JIPipe data from an ImageJ window

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

ImportImageJPathDataOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ImportImageJPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

importImagePlusFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

importImages(ImportLibrary, OMEROMetadataStoreClient, ImportConfig, ImportCandidates) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

Copy of importCandidates in ImportLibrary that returns the list of uploaded images.

ImportJIPipeProjectDataOperation - Class in org.hkijena.jipipe.extensions.utils.display

ImportJIPipeProjectDataOperation() - Constructor for class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

ImportJIPipeSlotFolderAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

ImportJIPipeSlotFolderAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

ImportJIPipeSlotFolderAlgorithm(ImportJIPipeSlotFolderAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

importLUT(LUT) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition

importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm

importROI(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

Imports and displays a ROI on the current image

importROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

importROIs(ROIListData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

importTableFromCSV(Path, JIPipeProjectWorkbench) - Static method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

Imports a table from CSV and creates a new JIPipeTableEditor tab

INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter

include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter

incrementProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

indented - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

Index() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

Creates a new instance.

Index(int, int) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

Creates a new instance and initializes it

InequalityPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

InequalityPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator

info(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

info(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

InheritanceConversionEditorUI - Class in org.hkijena.jipipe.ui.components

Editor for an inheritance conversion stored in an JIPipeDataSlotInfo

InheritanceConversionEditorUI(Map<JIPipeDataInfo, JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.InheritanceConversionEditorUI

inheritedSlot() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

InheritedSlotListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders an available entry for inherited slot in JIPipeDataSlotInfo

InheritedSlotListCellRenderer(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer

initialise(Graphics2D, Rectangle2D, CategoryPlot, int, PlotRenderingInfo) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Initialises the renderer.

initialize() - Method in class org.hkijena.jipipe.installer.linux.ui.SetupPanel

initialize() - Method in class org.hkijena.jipipe.JIPipe

Initializes JIPipe.

initialize(ExtensionSettings, JIPipeRegistryIssues) - Method in class org.hkijena.jipipe.JIPipe

Initializes JIPipe

initialize() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

initializeAddDataSourceMenu(JIPipeGraphEditorUI, JMenu, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes a menu that adds data sources

initializeAddNodesMenus() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

Initializes the "Add nodes" area

initializeAddNodesMenus(JIPipeGraphEditorUI, JMenuBar, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes the "Add nodes" menus

initializeCLIJ(Context, boolean) - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

Initializes CLIJ based on the settings

initializeCommonActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Initializes the tool bar

initializeMenuForCategory(JIPipeGraphEditorUI, JMenu, JIPipeNodeTypeCategory, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Initializes a menu for one algorithm category

InputImagesToMontage - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

InputImagesToMontage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

InputImagesToMontage(InputImagesToMontage) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

InputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

InputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection

Creates a new instance

insertNode(String, JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Inserts an algorithm into the graph

insertNode(JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Inserts an algorithm into the graph.

insertUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener

insertUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

install() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

Activates the theme.

installContextActionsInto(JToolBar, Set<JIPipeNodeUI>, List<NodeUIContextAction>, JIPipeGraphCanvasUI) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

installDefaults() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

InstallerRun - Class in org.hkijena.jipipe.installer.linux.api

InstallerRun() - Constructor for class org.hkijena.jipipe.installer.linux.api.InstallerRun

installEvents() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Install registration events.

installExtension(JIPipeWorkbench, JIPipeJsonExtension, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Installs a loaded project

installExtensionFromFile(JIPipeWorkbench, Path, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Loads a project and installs it

installExtensions(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Allows the user to select files to install

installMenuExtension(JIPipeWorkbench, JMenu, MenuTarget, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils

Installs an extension menu

installNow() - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow

INSTANCE - Static variable in class org.hkijena.jipipe.utils.NaturalOrderComparator

InstantFuture<T> - Class in org.hkijena.jipipe.utils

A dummy Future

InstantFuture(T) - Constructor for class org.hkijena.jipipe.utils.InstantFuture

Initializes a new instance

IntegerAndIntegerPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

IntegerAndIntegerPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter

Creates a new instance

IntegerAndIntegerPairParameter(IntegerAndIntegerPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter

Creates a copy

IntegerAndIntegerPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple IntegerAndIntegerPairParameter

IntegerList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Integer

IntegerList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

Creates a new empty list

IntegerList(IntegerList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList

Creates a copy

IntegerRange - Class in org.hkijena.jipipe.extensions.parameters.generators

Parameter that contains an integer range as string.

IntegerRange() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a new instance with a null value

IntegerRange(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a new instance and initializes it

IntegerRange(IntegerRange) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Creates a copy

IntegerRange.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.generators

Deserializes the reference from a string

IntegerRange.Serializer - Class in org.hkijena.jipipe.extensions.parameters.generators

Serializes the reference as ID

IntegerRangeParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.generators

Editor for IntegerRange

IntegerRangeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

IntegerRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Integer

IntegerRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterGenerator

Creates a new instance

IntegrateColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

IntegrateColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

Creates a new instance

IntegrateColumnsAlgorithm(IntegrateColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

Creates a copy

IntegratingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables

A ColumnOperation that creates an integrated output (meaning that the output only contains one entry)

IntegratingColumnOperationEntry(String, String, IntegratingColumnOperation) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry

Creates a new entry

IntegratingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

A parameter that models processing an input column via an integration function and generating an output column

IntegratingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

IntegratingTableColumnProcessorParameter(IntegratingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

IntegratingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

IntegratingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList

Creates a new instance

IntegratingTableColumnProcessorParameterList(IntegratingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList

Creates a copy

InternalGradientSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Internal gradient segmenter

InternalGradientSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

InternalGradientSegmentation2DAlgorithm(InternalGradientSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

Copies the algorithm

InternalNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

InternalNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

InterpolationMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

Available interpolation methods

interruptThreads(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

intersect(RectangularLine) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

Returns true if this line intersects with the other line

intersectWith(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Gets the lower visibility of this one one the other one

IntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi

A parameter that is intended to set or scale an integer

IntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

Creates a new instance with default values

IntModificationParameter(int, double, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

IntModificationParameter(IntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

Creates a copy

IntModificationParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for IntModificationParameter

IntModificationParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

IntParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Integer

IntParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

IntPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Integer

IntPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

IntRangeAndIntegerPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

IntRangeAndIntegerPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter

Creates a new instance

IntRangeAndIntegerPairParameter(IntRangeAndIntegerPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter

Creates a copy

IntRangeAndIntegerPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple IntRangeAndIntegerPairParameter

INVALID_FILESYSTEM_CHARACTERS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

INVALID_FILESYSTEM_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils

INVALID_JSONIFY_CHARACTERS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

INVALID_JSONIFY_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils

InvertColorsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ImageProcessor

InvertColorsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

Instantiates a new node type.

InvertColorsAlgorithm(InvertColorsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

Instantiates a new node type.

InvertFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

InvertFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction

invertSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

InvertSelectionNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

InvertSelectionNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

invokeMethod(Object, String, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Calls a function and returns its output

IOInterfaceAlgorithm - Class in org.hkijena.jipipe.api.compartments.algorithms

Algorithm that passes the input to the output

IOInterfaceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Creates a new instance.

IOInterfaceAlgorithm(IOInterfaceAlgorithm) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Creates a copy of the other algorithm

isAddAsAnnotations() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

isAddContextActionsToContextMenu() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isAddFileExtension() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

isAddNameToTable() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isAddToSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectedEvent

isAllowCache() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

isAllowInheritedOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isAllowInheritedOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isAllowSkipAlgorithmsWithoutInput() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

isAllowUserModification() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

isAnnotateSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

isAnnotateWithChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isAnnotateWithSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isAppend() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

isAppendDataTypeAsMetadata() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

isAppendDataTypeUsesRealDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

isAppendDirectoryNameToTarget() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isApplyDespeckle() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isApplyFirstCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isApplyGaussian() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isApplyInternalGradient() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isApplyMerging() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

isApplySecondCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

isArray() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the value is an array

isAskOnDeleteCompartment() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAskOnDeleteNode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAskOnDeleteParameter() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isAssembleTemplates() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isAssignableTo(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

More powerful variant of Class.isAssignableFrom that supports primitives.

isAttachOnlyNonDefaultParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isAttachParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isAutoCalibrateAfterPulling() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

isAutoClamp() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

isAutoSaveLastDisplay() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

isAutoSaveLastImporter() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

isAutoScale() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isAutoScale() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isBlackBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isBlackBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

isCancel() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent

isCanceled() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

isCancelled() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

isCancelled() - Method in class org.hkijena.jipipe.utils.InstantFuture

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

isCollapsed() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

isCompatible(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Returns true if an algorithm can be run in a single ImageJ algorithm run

isConcatenate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isConcatenate() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isContinueLoading() - Method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

isConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the input data type can be converted into the output data type.

isCorrectCorners() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isCreateComposite() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

isCreateLauncher() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

isCrop() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isCrop() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isCropC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropXY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCropZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

isCurrentlyRunning() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

isDark() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

isDarkBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

isDataUnique() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns true if all rows are unique according to their traits

isDeduplicate() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

isDiscardExistingAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

isDone() - Method in class org.hkijena.jipipe.utils.InstantFuture

isDoScaling() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDrawOutsideEdges() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

isEmpty() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

isEmpty() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

isEmpty() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

isEnableAutoSave() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

isEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

isEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

isEnabled() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

isEnableLayoutHelper() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isExcludeEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isExcludeOnEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isExcludeSelected() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isExpandCanvas() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

isExtractRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isExtractRois() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isFastMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

isFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Returns if the string does not contain invalid characters.

isFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns if the string does not contain invalid characters.

isFlipTemplateHorizontally() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isFlipTemplateVertically() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isFloatingPointOutput() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

isForceReflection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isFullPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

isGenerateCachePreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

isGenerateResultPreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

isGeneratingTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if the parameter is a generating table column.

isHasParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isHeavy(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns true if this data is considered as having a large size

isHeavy() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

isHidden(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData

Returns true if this data should be be accessible by the user

isHidden() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

isHidden() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

isHidden() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Returns true if this algorithm should not appear in the list of available algorithms.

isHidden(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the data type with given ID is hidden

isHidden() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

isIgnoreC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

isIgnoreCustomParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isIgnoreImportedDataAnnotations() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

isIgnoreImportedDataAnnotations() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

isIgnoreInputAnnotations() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

isIgnoreInputAnnotations() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

isIgnoreInvalidSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

isIgnoreMissingAnnotations() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

isIgnoreMissingChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

isIgnoreMissingColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

isIgnoreMissingMetadata() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

isIgnoreMissingSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isIgnoreReflectionParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

isIgnoreT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

isIgnoreValidation() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

isIgnoreZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

isIncludeHoles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isIncomplete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns true if there is at least one slot that has no rows attached to it

isInitialized() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

isInitializing() - Method in class org.hkijena.jipipe.JIPipe

isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isInputIsEDM() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isInputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isInputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isInstantiated() - Static method in class org.hkijena.jipipe.JIPipe

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

isInvertThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

isKeepAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

isKeepSameChannelCount() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

isLabels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

isLabels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

isLargeVirtualDataTypesByDefault() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

isLayoutHelperEnabled() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

isLoadFromCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isLoadFromCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isLocal() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

isLogarithmic() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

isMaximizeWindows() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isMeanVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the mean indicator is draw for each item.

isMedianVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Returns the flag that controls whether or not the median indicator is draw for each item.

isModern() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

isMutableTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if the parameter is a mutable table column.

isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

isNeverAskOnClosingTabs() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isNoLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isNormalize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

isNullOrEmpty(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Returns true if the string is null or empty

isNullOrEmpty(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns true if the string is null or empty

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

isNumeric(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Returns true if a column is numeric

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

isNumeric() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns true if this column contains double entries.

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

IsolateNodesUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

IsolateNodesUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

isOnlyActiveImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

isOnlyFirst() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

isOpenAllSeries() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isOutputFiles() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputFolders() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputNonExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

isOutputOverlaps() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

isOutputRoi() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

isOutputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

isOutputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

isOverlapping() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Returns true if this component overlaps with another component

isOverrideReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

isPadded() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

isParallelizationEnabled() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

isParameterAnnotationsUseInternalNames() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

isPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

isPostprocessor() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Indicates if the node should be run after all other nodes.

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

isPreprocessor() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Indicates if the node should be run before all other nodes.

isPreSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isPreventUpdateSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

isPrimitiveWrapperOf(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Returns true if the class is a primitive wrapper

isProjectAllHyperstackTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

isProjectInfoGeneratesPreview() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isRealTimeRunEnabled() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

isRecalibrate() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

isRegistered(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

isRemoveColumn() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

isRemoveExtensions() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

isRemoveLut() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

isRemoveLut() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

isRemoveOutputAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

isRenderedOrRendering() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview

isReplaceIfExists() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

isRestoreTabs() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

isRestrictToROI() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isRunnable() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isRunnable() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns true if nodes of this category can be run in a single run

isRunningOrEnqueued(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Determines if a runnable is enqueued or running

isRunningOrEnqueued(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Determines if a runnable is enqueued or running

isSaveOutputs() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isSaveOutputs() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isSaveOutputs() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isSaveRGBWithImageJ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

isSaveROI() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSeparateChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

isShowingInOverhang() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

If true, this item is shown in the toolbar overhang menu instead of the toolbar itself.

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

isShowIntroduction() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isShowIntroductionTour() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isShowParameterSearchBar() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isShowProjectInfo() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isSilent() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

If true, exceptions are discarded

isSilent() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isSingle() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Returns true if each slot only has one row

isSkipExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

isSkipInvalid() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

isSortedStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isSortFilesNumerically() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

isSplitAfterwards() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

isSplitAtJunctions() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

isSplitByInputSlots() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

isSplitC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSplitChannels() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitChannels() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isSplitFocalPlanes() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitFocalPlanes() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isSplitSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

isSplitT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isSplitTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSplitTimePoints() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isSplitZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

isStitchTiles() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isStitchTiles() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isStoredAsResource() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

isStoreToCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

isStoreToCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

isStrict() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

isStrictMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

isSubtract() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

isSuccess() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry

isSwapDimensions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

isSwapDimensions() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

isSwitchPanningDirection() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

isTriviallyConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Returns true if the input data type can be trivially converted into the output data type.

isTrySolveJunctions() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

isUiHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Determines if the edge should be shown in UI

isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

isUILabelEnabled() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

If true, the ParameterPanel will display a label with the parameter name next to this UI.

isUniqueStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

isUploadAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

isUseBioFormats() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

isUseExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

isUseNativeChooser() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

isUseNaturalSortOrder() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

isUserCanDisconnect() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

isUserRemovable() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn

Returns if users can remove this source

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

isValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

isValidateImageJDependencies() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isValidateNodeTypes() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

isValidateOnSave() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

isValidName(String) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Returns true if the provided string is a valid slot name

isValidVariableName(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Returns true if the variable name is valid

isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

isVirtualCache() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

isVirtualMode() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

isVisible(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Returns if the parameter is visible

isVisible() - Method in class org.hkijena.jipipe.utils.MacroFlag

isVisibleIn(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Returns true if this algorithm is visible in the specified container compartment

isVisibleIn(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns true if this visibility is visible in a container with a minimum visibility

isVisibleIn(Roi, ImageSliceIndex, boolean, boolean, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Returns true if the ROI is visible at given slice index

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

isVisibleInCompartmentGraph() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

If the category should be available in the compartment graph editor

isVisibleInGraph() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxMenuExtension

isVisibleInGraph() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension

Override this method to determine if this button should be available for a graph

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

isVisibleInGraphCompartment() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

If the category should be available in the graph compartment editor

isWithCompartmentAndAlgorithm() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

isWithLegend() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

isWithMetadataKeys() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

isWithNonMaximaSuppression() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

isWithParents() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

italic - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

ITERATING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

IteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

IteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

Creates a new instance

IteratingPythonScriptAlgorithm(IteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

Creates a copy

J

JIPipe - Class in org.hkijena.jipipe

A scijava service that discovers JIPipe plugins in the classpath

JIPipe() - Constructor for class org.hkijena.jipipe.JIPipe

JIPipe.DatatypeRegisteredEvent - Class in org.hkijena.jipipe

Triggered when a new data type is registered

JIPipe.ExtensionContentAddedEvent - Class in org.hkijena.jipipe

Generated when content is added to an JIPipeJsonExtension

JIPipe.ExtensionContentRemovedEvent - Class in org.hkijena.jipipe

Generated when content is removed from an JIPipeJsonExtension

JIPipe.ExtensionDiscoveredEvent - Class in org.hkijena.jipipe

Triggered when a new extension was discovered

JIPipe.ExtensionRegisteredEvent - Class in org.hkijena.jipipe

Triggered by JIPipeRegistry when an extension is registered

JIPipe.NodeInfoRegisteredEvent - Class in org.hkijena.jipipe

Triggered when an algorithm is registered

JIPIPE_DEPENDENCY_URLS - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun

JIPipeAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeGraphNode that contains a non-empty workload.

JIPipeAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Initializes a new node type instance and sets a custom slot configuration

JIPipeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Initializes a new node type instance

JIPipeAlgorithm(JIPipeAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Creates a copy

JIPipeAlgorithm.StateSerializer - Class in org.hkijena.jipipe.api.nodes

Serializer used by getStateId() It automatically skips name, compartment, description, slot configuration, and UI parameters that are not relevant to the state

JIPipeAlgorithmCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache

UI around an JIPipeRun result

JIPipeAlgorithmCacheBrowserUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

JIPipeAlgorithmCacheTree - Class in org.hkijena.jipipe.ui.cache

Displays a tree that contains all cached items of a state

JIPipeAlgorithmCacheTree(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

JIPipeAlgorithmCompendiumUI - Class in org.hkijena.jipipe.ui.compendium

A browsable list of algorithms with full documentation

JIPipeAlgorithmCompendiumUI() - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI

Creates a new instance

JIPipeAlgorithmGraphHistorySnapshot - Interface in org.hkijena.jipipe.api.history

JIPipeAlgorithmIconRef - Class in org.hkijena.jipipe.extensions.parameters.references

Used by JsonNodeInfo to setup icons

JIPipeAlgorithmIconRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

Creates a new instance

JIPipeAlgorithmIconRef(JIPipeAlgorithmIconRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

Copies an instance

JIPipeAlgorithmIconRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Editor for JIPipeAlgorithmIconRef

JIPipeAlgorithmIconRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

JIPipeAlgorithmListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeGraphNode

JIPipeAlgorithmListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer

Creates a new renderer

JIPipeAlgorithmSourceFinderAlgorithmUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for finding algorithms

JIPipeAlgorithmSourceFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmSourceFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmSourceFinderSlotUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for one slot in the algorithm finder

JIPipeAlgorithmSourceFinderSlotUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeDataSlot, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI

Creates a slot UI

JIPipeAlgorithmSourceFinderUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

A user interface to find a matching algorithm for the specified target slot

JIPipeAlgorithmSourceFinderUI(JIPipeGraphCanvasUI, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI

Creates a new UI

JIPipeAlgorithmSourceRanking - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

Ranks JIPipeNodeInfo or JIPipeGraphNode instances It ranks by following values: - search string (node name) - search string (node description) - data type compatibility (0 = not, -1=nontrivial, -2=trivial, -3=exact match) - already occupied or not (no = 0, yes = 1)

JIPipeAlgorithmSourceRanking(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceRanking

JIPipeAlgorithmTargetFinderAlgorithmUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for finding algorithms

JIPipeAlgorithmTargetFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmTargetFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Creates an algorithm UI for one target algorithm

JIPipeAlgorithmTargetFinderSlotUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

UI for one slot in the algorithm finder

JIPipeAlgorithmTargetFinderSlotUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeDataSlot, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI

Creates a slot UI

JIPipeAlgorithmTargetFinderUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

A user interface to find a matching algorithm for the specified target slot

JIPipeAlgorithmTargetFinderUI(JIPipeGraphCanvasUI, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI

Creates a new UI

JIPipeAlgorithmTargetRanking - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder

Ranks JIPipeNodeInfo or JIPipeGraphNode instances It ranks by following values: - search string (node name) - search string (node description) - data type compatibility (0 = not, -1=nontrivial, -2=trivial, -3=exact match) - already occupied or not (no = 0, yes = 1)

JIPipeAlgorithmTargetRanking(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetRanking

JIPipeAnnotation - Class in org.hkijena.jipipe.api.data

A single annotation

JIPipeAnnotation() - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Creates an empty instance

JIPipeAnnotation(String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Initializes a new instance

JIPipeAnnotation(String, Collection<String>) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Creates a new instance from an array.

JIPipeAnnotation(String, String[]) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation

Creates a new instance from an array.

JIPipeAnnotationMergeStrategy - Enum in org.hkijena.jipipe.api.data

Determines how annotations are merged

JIPipeApplicationSettingsUI - Class in org.hkijena.jipipe.ui.settings

UI for JIPipeSettingsRegistry

JIPipeApplicationSettingsUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeApplicationSettingsUI

Creates a new instance

JIPipeAsyncResultDataPlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis

A JIPipeResultDataSlotPreview that uses a SwingWorker to load previews in a separate thread.

JIPipeAsyncResultDataPlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview

Creates a new renderer

JIPipeAuthorMetadata - Class in org.hkijena.jipipe.api

Models an author with affiliations

JIPipeAuthorMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Creates a new instance

JIPipeAuthorMetadata(String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Initializes the instance

JIPipeAuthorMetadata(JIPipeAuthorMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata

Makes a copy

JIPipeAuthorMetadata.List - Class in org.hkijena.jipipe.api

JIPipeAuthorMetadataParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util

JIPipeAuthorMetadataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

Creates new instance

JIPipeCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache

UI around an JIPipeRun result

JIPipeCacheBrowserUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

JIPipeCacheDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache

UI that displays a JIPipeDataSlot that is cached

JIPipeCacheDataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI

JIPipeCacheDataSlotTableUI.DataSlotTableModel - Class in org.hkijena.jipipe.ui.cache

Wraps around a JIPipeDataSlot to display a "toString" column

JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the column header of JIPipeCacheDataSlotTableUI.DataSlotTableModel

JIPipeCachedDataPreview - Class in org.hkijena.jipipe.ui.cache

A component that acts as table cell (or other component) that generates a preview of a cached JIPipeData Preview generation is put into its own thread.

JIPipeCachedDataPreview(Component, JIPipeVirtualData, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview

Creates a new instance

JIPipeCachedSlotToFilesByMetadataExporterRun - Class in org.hkijena.jipipe.ui.cache

JIPipeCachedSlotToFilesByMetadataExporterRun(JIPipeWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

JIPipeCachedSlotToOutputExporterRun - Class in org.hkijena.jipipe.ui.cache

JIPipeCachedSlotToOutputExporterRun(JIPipeWorkbench, Path, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

JIPipeCacheManagerUI - Class in org.hkijena.jipipe.ui.cache

UI that monitors the queue

JIPipeCacheManagerUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Creates new instance

JIPipeCacheMultiDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache

UI that displays a JIPipeDataSlot that is cached

JIPipeCacheMultiDataSlotTableUI(JIPipeProjectWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI

JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the column header

JIPipeCacheSlotDataSource - Class in org.hkijena.jipipe.api.data

JIPipeCacheSlotDataSource(JIPipeDataSlot, int) - Constructor for class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource

JIPipeCacheStateTreeCellRenderer - Class in org.hkijena.jipipe.ui.cache

Renders the tree in JIPipeResultAlgorithmTree

JIPipeCacheStateTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer

Creates new renderer

JIPipeCacheTree - Class in org.hkijena.jipipe.ui.cache

Displays a tree that contains all cached items of a state

JIPipeCacheTree(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

JIPipeColumnGrouping - Enum in org.hkijena.jipipe.api.nodes

Strategies that determine how to detect the columns that should be used for matching

JIPipeCompartmentGraphDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor

Installs Drag and Drop features that create filesystem nodes

JIPipeCompartmentGraphDragAndDropBehavior() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

JIPipeCompartmentGraphUI - Class in org.hkijena.jipipe.ui.compartments

Graph editor UI for a project compartment graph

JIPipeCompartmentGraphUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

JIPipeCompartmentOutput - Class in org.hkijena.jipipe.api.compartments.algorithms

A graph compartment output Transfers data 1:1 from input to output

JIPipeCompartmentOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput

Creates a new instance.

JIPipeCompartmentOutput(JIPipeCompartmentOutput) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput

Creates a copy of the other algorithm

JIPipeCompartmentOutputData - Class in org.hkijena.jipipe.api.compartments.datatypes

Represents an JIPipeCompartmentOutput in the compartment graph.

JIPipeCompartmentOutputData() - Constructor for class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

JIPipeCompartmentsExtension - Class in org.hkijena.jipipe.api.compartments

Extension that provides compartment management functionality

JIPipeCompartmentsExtension() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

JIPipeCompartmentUI - Class in org.hkijena.jipipe.ui.compartments

Editor for one project compartment graph Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content

JIPipeCompartmentUI(JIPipeProjectWorkbench, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI

Creates a new editor

JIPipeCompendiumUI<T> - Class in org.hkijena.jipipe.ui.compendium

A browsable list of help pages

JIPipeCompendiumUI(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Creates a new instance

JIPipeComponentCellRenderer - Class in org.hkijena.jipipe.ui.components

JIPipeComponentCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer

JIPipeConnectionDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor

Adds connection drag and drop behavior to a data slot

JIPipeConnectionDragAndDropBehavior(JIPipeDataSlotUI, JButton) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior

Adds connection drag and drop behavior to a data slot

JIPipeContextAction - Annotation Type in org.hkijena.jipipe.api.parameters

An additional action (usually UI action) that is attached to the ParameterPanel.

JIPipeCustomMenuRegistry - Class in org.hkijena.jipipe.ui.registries

Registry for menu extensions

JIPipeCustomMenuRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

JIPipeCustomParameterCollection - Interface in org.hkijena.jipipe.api.parameters

If a class inherits from this interface, reflection-based parameter discovery is replaced by the getCustomParameters() method result.

JIPipeData - Interface in org.hkijena.jipipe.api.data

Base class for any JIPipe data wrapper class Any custom data should have following constructors: 1.

JIPipeDataBatch - Class in org.hkijena.jipipe.api.nodes

Wraps a set of input and output slots that belong together This can be used for convenience

JIPipeDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Creates a new interface

JIPipeDataBatch(JIPipeDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Creates a copy

JIPipeDataBatchAlgorithm - Interface in org.hkijena.jipipe.api.nodes

Methods shared across all JIPipeAlgorithm that generate data batches

JIPipeDataByMetadataExporter - Class in org.hkijena.jipipe.api.data

Class that exports data based on metadata

JIPipeDataByMetadataExporter() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

JIPipeDataByMetadataExporter(JIPipeDataByMetadataExporter) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

JIPipeDataConverter - Interface in org.hkijena.jipipe.api.data

Interface that converts between JIPipeData instances

JIPipeDataDisplayOperation - Interface in org.hkijena.jipipe.api.data

An operation that is executed on showing existing data located in memory/cache.

JIPipeDataImportOperation - Interface in org.hkijena.jipipe.api.data

An operation that is executed on showing existing data located in memory/cache The operations must be registered and will appear if the developer does not override the default importer row UI.

JIPipeDataInfo - Class in org.hkijena.jipipe.api.data

Compound type that contains all metadata of an JIPipeData type

JIPipeDataInfo.Deserializer - Class in org.hkijena.jipipe.api.data

Deserializes a info from a data type ID.

JIPipeDataInfo.KeyDeserializer - Class in org.hkijena.jipipe.api.data

Deserializer for a Map key

JIPipeDataInfo.Serializer - Class in org.hkijena.jipipe.api.data

Serializes a info as data type ID

JIPipeDataInfoCellRenderer - Class in org.hkijena.jipipe.ui.cache

Renders JIPipeData

JIPipeDataInfoCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer

Create new instance

JIPipeDataInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeDataInfo

JIPipeDataInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer

Creates a new renderer

JIPipeDataInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references

Helper to allow easy serialization of JIPipeDataInfo references

JIPipeDataInfoRef(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

Initializes from data ID

JIPipeDataInfoRef(JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

JIPipeDataInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

New instance

JIPipeDataInfoRef(JIPipeDataInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

Creates a copy

JIPipeDataInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes the reference from a string

JIPipeDataInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes the reference as ID

JIPipeDataInfoRefListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders JIPipeDataInfoRef

JIPipeDataInfoRefListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer

Creates a new renderer

JIPipeDataInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Parameter for JIPipeDataInfoRef

JIPipeDataInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

JIPipeDataOperation - Interface in org.hkijena.jipipe.api.data

A user-interface operation on data

JIPipeDataParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.editors

Settings for JIPipeData parameters

JIPipeDataSlot - Class in org.hkijena.jipipe.api.data

A data slot holds an JIPipeData instance.

JIPipeDataSlot(JIPipeDataSlotInfo, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlot

Creates a new slot

JIPipeDataSlotBackupListCellRenderer - Class in org.hkijena.jipipe.ui.testbench

Renders a JIPipeTestbenchSnapshot

JIPipeDataSlotBackupListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer

Creates a new renderer

JIPipeDataSlotCacheManagerUI - Class in org.hkijena.jipipe.ui.cache

Manages the cache for a specific data slot.

JIPipeDataSlotCacheManagerUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

JIPipeDataSlotInfo - Class in org.hkijena.jipipe.api.data

Defines an JIPipeGraphNode data slot.

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates an unnamed slot.

JIPipeDataSlotInfo(JIPipeInputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(JIPipeOutputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

JIPipeDataSlotInfo(JIPipeDataSlotInfo) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Copies the definition

JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Creates a new instance.

JIPipeDataSlotInfo.Deserializer - Class in org.hkijena.jipipe.api.data

Deserializes an JIPipeDataSlotInfo

JIPipeDataSlotInfo.Serializer - Class in org.hkijena.jipipe.api.data

Serializes an JIPipeDataSlotInfo

JIPipeDataSlotListCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings

Renders a JIPipeDataSlot

JIPipeDataSlotListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer

Creates a new renderer

JIPipeDataSlotRowUI - Class in org.hkijena.jipipe.ui.cache

UI for a row

JIPipeDataSlotRowUI(JIPipeWorkbench, JIPipeDataSlot, int) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotRowUI

Creates a new instance

JIPipeDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders additional String columns in a table

JIPipeDataSlotTableColumnHeaderRenderer(JIPipeExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer

Creates a new instance

JIPipeDataSlotTreeCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings

Renders an JIPipeDataSlot in a JTree

JIPipeDataSlotTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer

Creates a new renderer

JIPipeDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

UI around an JIPipeDataSlot

JIPipeDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Creates a new UI

JIPipeDataSource - Interface in org.hkijena.jipipe.api.data

An object that points to some source of JIPipeData

JIPipeDataTypeCompendiumUI - Class in org.hkijena.jipipe.ui.compendium

JIPipeDataTypeCompendiumUI() - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI

JIPipeDataTypePicker - Class in org.hkijena.jipipe.ui.components

Panel that allows to pick JIPipeDataInfo

JIPipeDataTypePicker(JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

JIPipeDataTypePicker.DataTypeDeselectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is deselected

JIPipeDataTypePicker.DataTypeSelectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeDataTypePicker.Mode - Enum in org.hkijena.jipipe.ui.components

The mode of the picker

JIPipeDataTypePicker.Renderer - Class in org.hkijena.jipipe.ui.components

Renders an item

JIPipeDataTypePicker.SelectedDataTypesChangedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeDatatypeRegistry - Class in org.hkijena.jipipe.api.registries

Contains known JIPipeData types, and associates them to their respective JIPipeDataSlot.

JIPipeDatatypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Creates a new instance

JIPipeDatatypeRegistry.DataConverterEdge - Class in org.hkijena.jipipe.api.registries

Edge between JIPipeDataInfo instances that indicate a conversion

JIPipeDefaultDocumentation - Class in org.hkijena.jipipe.api

Default implementation of JIPipeDocumentation

JIPipeDefaultDocumentation(String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

Creates a new instance

JIPipeDefaultJavaExtension - Class in org.hkijena.jipipe

Default implementation of JIPipeJavaExtension

JIPipeDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Creates a new instance

JIPipeDefaultMutableSlotConfiguration - Class in org.hkijena.jipipe.api.data

A schema for slots

JIPipeDefaultMutableSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Creates a new instance

JIPipeDefaultMutableSlotConfiguration.Builder - Class in org.hkijena.jipipe.api.data

A builder for creating a configuration

JIPipeDefaultNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries

Mutable implementation of JIPipeNodeRegistrationTask

JIPipeDefaultNodeRegistrationTask() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

Creates a new task

JIPipeDefaultParameterTypeInfo - Class in org.hkijena.jipipe.api.parameters

Standard implementation of JIPipeParameterTypeInfo

JIPipeDefaultParameterTypeInfo(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

JIPipeDefaultResultDataSlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis

Renders a JIPipeDataSlot row as table cell

JIPipeDefaultResultDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreview

Creates a new renderer

JIPipeDefaultResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis

Provides a standard result slot UI that can be also further extended.

JIPipeDefaultResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI

Creates a new UI

JIPipeDependency - Interface in org.hkijena.jipipe

Encapsulates a dependency such as an extension or JSON extension

JIPipeDependencyListCellRenderer - Class in org.hkijena.jipipe.ui.extensions

Renders an JIPipeDependency

JIPipeDependencyListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer

Creates a new renderer

JIPipeDependencyUI - Class in org.hkijena.jipipe.ui.extensions

Displays an JIPipeDependency

JIPipeDependencyUI(JIPipeDependency) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyUI

Creates a new UI

JIPipeDocumentation - Annotation Type in org.hkijena.jipipe.api

Used within JIPipe to annotate types and methods with documentation

JIPipeDummyParameterCollection - Class in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that stores exactly one value (an object) This is used in conjunction with JIPipeManualParameterAccess

JIPipeDummyParameterCollection() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection

JIPipeDynamicParameterCollection - Class in org.hkijena.jipipe.api.parameters

Holds a user-definable set of parameters

JIPipeDynamicParameterCollection(Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance with user modification enabled

JIPipeDynamicParameterCollection(boolean, Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance

JIPipeDynamicParameterCollection(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Copies the parameters from the original

JIPipeDynamicParameterCollection(boolean, Set<JIPipeParameterTypeInfo>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Creates a new instance

JIPipeDynamicParameterCollection.ParameterAddingEvent - Class in org.hkijena.jipipe.api.parameters

JIPipeDynamicParameterCollection.UserParameterDefinition - Class in org.hkijena.jipipe.api.parameters

Parameter definition by a user

JIPipeEmptyNodeInfo - Class in org.hkijena.jipipe.api.nodes

An empty algorithm info.

JIPipeEmptyNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

JIPipeEmptyNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes the empty algorithm info

JIPipeExportedCompartment - Class in org.hkijena.jipipe.api.compartments

Exported JIPipeProjectCompartment

JIPipeExportedCompartment() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Creates a new instance

JIPipeExportedCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Initializes the instance from a compartment

JIPipeExportedCompartment.Deserializer - Class in org.hkijena.jipipe.api.compartments

Deserializes the compartment

JIPipeExportedCompartment.Serializer - Class in org.hkijena.jipipe.api.compartments

Serializes the compartment

JIPipeExportedDataTable - Class in org.hkijena.jipipe.api.data

Contains all metadata exported from an JIPipeDataSlot

JIPipeExportedDataTable(JIPipeDataSlot, Path, List<Integer>) - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Initializes a new table from a slot

JIPipeExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

JIPipeExportedDataTable.Row - Class in org.hkijena.jipipe.api.data

A row in the table

JIPipeExpressionRegistry - Class in org.hkijena.jipipe.api.registries

Registry for table operations and other functional expressions

JIPipeExpressionRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

JIPipeExpressionRegistry.ColumnOperationEntry - Class in org.hkijena.jipipe.api.registries

A column operation entry

JIPipeExpressionRegistry.ExpressionFunctionEntry - Class in org.hkijena.jipipe.api.registries

JIPipeFixedThreadPool - Class in org.hkijena.jipipe.api

Contains a fixed thread pool.

JIPipeFixedThreadPool(int) - Constructor for class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Initializes a pool with the specified amount of threads.

JIPipeGraph - Class in org.hkijena.jipipe.api.nodes

Manages multiple JIPipeGraphNode instances as graph

JIPipeGraph() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph

Creates a new node type graph

JIPipeGraph(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph

Creates a deep copy of the other algorithm graph

JIPipeGraph.Deserializer - Class in org.hkijena.jipipe.api.nodes

Deserializes an JIPipeGraph

JIPipeGraph.GraphChangedEvent - Class in org.hkijena.jipipe.api.nodes

Event is triggered when algorithm graph is changed

JIPipeGraph.NodeConnectedEvent - Class in org.hkijena.jipipe.api.nodes

Generated when a connection was made in JIPipeGraph

JIPipeGraph.NodeDisconnectedEvent - Class in org.hkijena.jipipe.api.nodes

Generated when slots are disconnected

JIPipeGraph.NodeSlotsChangedEvent - Class in org.hkijena.jipipe.api.nodes

Triggered when an algorithm's slots change

JIPipeGraph.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes an JIPipeGraph

JIPipeGraphCanvasUI - Class in org.hkijena.jipipe.ui.grapheditor

UI that displays an JIPipeGraph

JIPipeGraphCanvasUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Creates a new UI

JIPipeGraphCanvasUI.AlgorithmSelectedEvent - Class in org.hkijena.jipipe.ui.grapheditor

Generated when an algorithm is selected

JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent - Class in org.hkijena.jipipe.ui.grapheditor

Triggered when An JIPipeGraphCanvasUI selection was changed

JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.grapheditor

An action that is requested by an JIPipeNodeUI and passed down to a JIPipeGraphEditorUI

JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.grapheditor

Triggered when an JIPipeNodeUI requests a default action (double click)

JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent - Class in org.hkijena.jipipe.ui.grapheditor

Triggered when a graph canvas was updated

JIPipeGraphCompartmentDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor

Installs Drag and Drop features that create filesystem nodes

JIPipeGraphCompartmentDragAndDropBehavior() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

JIPipeGraphCompartmentUI - Class in org.hkijena.jipipe.ui.grapheditor

Editor for a project graph compartment

JIPipeGraphCompartmentUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Creates a project graph compartment editor

JIPipeGraphDragAndDropBehavior - Interface in org.hkijena.jipipe.ui.grapheditor

Provides Drag and Drop behavior for JIPipeGraphCanvasUI

JIPipeGraphEdge - Class in org.hkijena.jipipe.api.nodes

A custom graph edge

JIPipeGraphEdge() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Initializes a new graph edge that is not user-disconnectable

JIPipeGraphEdge(boolean) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

Initializes a new graph edge

JIPipeGraphEditorMinimap - Class in org.hkijena.jipipe.ui.grapheditor

Renders a overview of the graph

JIPipeGraphEditorMinimap(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

JIPipeGraphEditorUI - Class in org.hkijena.jipipe.ui.grapheditor

A panel around JIPipeGraphCanvasUI that comes with scrolling/panning, properties panel, and a menu bar

JIPipeGraphEditorUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

JIPipeGraphEditorUI.NavigationRenderer - Class in org.hkijena.jipipe.ui.grapheditor

Renders items in the navigator

JIPipeGraphHistory - Class in org.hkijena.jipipe.api.history

Manages a Undo-history

JIPipeGraphHistory() - Constructor for class org.hkijena.jipipe.api.history.JIPipeGraphHistory

JIPipeGraphHistory.GraphHistoryChangedEvent - Class in org.hkijena.jipipe.api.history

Triggered when an JIPipeGraphHistory was changed

JIPipeGraphNode - Class in org.hkijena.jipipe.api.nodes

An algorithm is is a set of input and output data slots, and a run() function It is part of the JIPipeGraph.

JIPipeGraphNode(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Initializes this algorithm with a custom provided slot configuration and trait configuration

JIPipeGraphNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Initializes a new node type instance

JIPipeGraphNode(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Copies the input algorithm's properties into this algorithm

JIPipeGraphNode.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes an JIPipeGraphNode instance

JIPipeGraphRunner - Class in org.hkijena.jipipe.api

Executes an JIPipeGraph.

JIPipeGraphRunner(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.JIPipeGraphRunner

Creates a new instance

JIPipeGraphType - Enum in org.hkijena.jipipe.api

Attached to JIPipeGraph instances to indicate which kind of graph they are

JIPipeGraphViewMode - Enum in org.hkijena.jipipe.ui.grapheditor

The direction how a canvas renders the nodes

JIPipeGUICommand - Class in org.hkijena.jipipe

Command that runs the GUI

JIPipeGUICommand() - Constructor for class org.hkijena.jipipe.JIPipeGUICommand

JIPipeHeavyData - Annotation Type in org.hkijena.jipipe.api

Annotates a JIPipeData type as being "heavy" (large file size).

JIPipeHidden - Annotation Type in org.hkijena.jipipe.api

Marks a class as hidden

JIPipeHorizontalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

Slot UI with horizontal direction

JIPipeHorizontalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

Creates a new UI

JIPipeHorizontalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

An algorithm UI for horizontal display

JIPipeHorizontalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

Creates a new UI

JIPipeIconPickerDialog - Class in org.hkijena.jipipe.ui.components

Dialog that picks an icon

JIPipeIconPickerDialog(Window, String, Set<String>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

JIPipeImageJAdapterRegistry - Class in org.hkijena.jipipe.api.registries

Registers all known adapters between ImageJ and JIPipe data types

JIPipeImageJAdapterRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

JIPipeImageJPluginManager - Class in org.hkijena.jipipe.ui.ijupdater

JIPipe's own implementation of the ImageJ updater ImageJUpdater

JIPipeImageJPluginManager(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

JIPipeImageJPluginManager(JIPipeWorkbench, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

JIPipeImageJUpdateSiteDependency - Class in org.hkijena.jipipe

A dependency that points to an ImageJ update site.

JIPipeImageJUpdateSiteDependency() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency(String, String) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency(UpdateSite) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

Initializes the dependency from an update site

JIPipeImageJUpdateSiteDependency(JIPipeImageJUpdateSiteDependency) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

JIPipeImageJUpdateSiteDependency.List - Class in org.hkijena.jipipe

the List class

JIPipeInfoUI - Class in org.hkijena.jipipe.ui

UI that shows some introduction

JIPipeInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeInfoUI

Creates a new instance

JIPipeInheritanceConversionListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders inheritance conversion entries

JIPipeInheritanceConversionListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer

Creates a new renderer

JIPipeInputSlot - Annotation Type in org.hkijena.jipipe.api.nodes

Annotates an JIPipeGraphNode with an input slot.

JIPipeInputSlots - Annotation Type in org.hkijena.jipipe.api.nodes

Required to allow multiple JIPipeInputSlot

JIPipeIntegrateTableColumnsDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI for integrating table columns

JIPipeIntegrateTableColumnsDialogUI(ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI

JIPipeIOSlotConfiguration - Class in org.hkijena.jipipe.api.nodes

Slot configuration that always ensures 1:1 relation between input and output slots

JIPipeIOSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

Creates a new instance

JIPipeIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that iterates through each data row.

JIPipeIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Creates a new instance

JIPipeIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Creates a new instance

JIPipeIteratingAlgorithm(JIPipeIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Copies the algorithm

JIPipeIteratingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes

Groups data batch generation settings

JIPipeJavaExtension - Interface in org.hkijena.jipipe

A Java extension

JIPipeJavaNodeInfo - Class in org.hkijena.jipipe.api.nodes

JIPipeNodeInfo for an algorithm that is defined in Java code All necessary properties are extracted from class attributes

JIPipeJavaNodeInfo(String, Class<? extends JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

Creates a new node type info

JIPipeJavaNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes

Serializes the info

JIPipeJavaNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries

Registers a Java algorithm

JIPipeJavaNodeRegistrationTask(String, Class<? extends JIPipeGraphNode>, JIPipeDependency, URL) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

Creates a new registration task

JIPipeJsonAlgorithmExporterMultiSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Panel shown when multiple algorithms are selected

JIPipeJsonAlgorithmExporterMultiSelectionPanelUI(JIPipeWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterMultiSelectionPanelUI

JIPipeJsonAlgorithmExporterSingleSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Shown when one algorithm is selected

JIPipeJsonAlgorithmExporterSingleSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI

JIPipeJsonExporter - Class in org.hkijena.jipipe.ui.extensionbuilder

Exports a JsonNodeInfo

JIPipeJsonExporter(JIPipeProjectWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

Creates a new UI

JIPipeJsonExtension - Class in org.hkijena.jipipe

A JSON-serializable extension

JIPipeJsonExtension() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension

Creates a new instance

JIPipeJsonExtension.Deserializer - Class in org.hkijena.jipipe

Deserializer for the JIPipeJsonExtension.

JIPipeJsonExtensionContentListUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Lists the content of an JIPipeJsonExtension

JIPipeJsonExtensionContentListUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Creates new instance

JIPipeJsonExtensionGraphUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Graph editor UI used within an JIPipeJsonExtension

JIPipeJsonExtensionGraphUI(JIPipeJsonExtensionWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

Creates a new instance

JIPipeJsonExtensionInfoUI - Class in org.hkijena.jipipe.ui

UI that shows some introduction

JIPipeJsonExtensionInfoUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI

Creates a new instance

JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Panel shown when multiple algorithms are selected

JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI(JIPipeJsonExtensionWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI

JIPipeJsonExtensionProjectValidation - Class in org.hkijena.jipipe.ui.extensionbuilder

Supplies additional validation only for projects

JIPipeJsonExtensionProjectValidation(JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation

Creates a new instance

JIPipeJsonExtensionSettingsUI - Class in org.hkijena.jipipe.ui.settings

Panel containing algorithm settings when algorithms are edited in a JIPipeJsonExtension

JIPipeJsonExtensionSettingsUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeJsonExtensionSettingsUI

JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder

Shown when one algorithm is selected

JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI

JIPipeJsonExtensionWindow - Class in org.hkijena.jipipe.ui

Window that displays JIPipeJsonExtension UIs

JIPipeJsonExtensionWindow(Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Creates a new instance

JIPipeJsonExtensionWorkbench - Class in org.hkijena.jipipe.ui

UI around a JIPipeJsonExtension

JIPipeJsonExtensionWorkbench(JIPipeJsonExtensionWindow, Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

JIPipeJsonExtensionWorkbenchPanel - Class in org.hkijena.jipipe.ui

UI panel that contains references to an JIPipeJsonExtension UI

JIPipeJsonExtensionWorkbenchPanel(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel

JIPipeLauncher - Class in org.hkijena.jipipe

JIPipeLauncher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher

JIPipeLauncher.WindowWatcher - Class in org.hkijena.jipipe

JIPipeLogViewer - Class in org.hkijena.jipipe.ui.running

JIPipeLogViewer(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer

JIPipeLogViewer.LogEntry - Class in org.hkijena.jipipe.ui.running

JIPipeLogViewer.LogEntryRenderer - Class in org.hkijena.jipipe.ui.running

JIPipeManualParameterAccess - Class in org.hkijena.jipipe.api.parameters

A custom parameter access

JIPipeManualParameterAccess.Builder - Class in org.hkijena.jipipe.api.parameters

A builder for JIPipeManualParameterAccess

JIPipeMergedDataSlotTable - Class in org.hkijena.jipipe.api.data

Merges multiple JIPipeDataSlot Please not the previews are initialized with deferred rendering.

JIPipeMergedDataSlotTable(JTable, boolean) - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

JIPipeMergedDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the column header in merged JIPipeExportedDataTable instances

JIPipeMergedDataSlotTableColumnHeaderRenderer(JIPipeMergedExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer

JIPipeMergedExportedDataTable - Class in org.hkijena.jipipe.api.data

Merges multiple JIPipeExportedDataTable

JIPipeMergedExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

JIPipeMergedResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis

Displays the result of multiple JIPipeDataSlot

JIPipeMergedResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, List<JIPipeDataSlot>) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedResultDataSlotTableUI

JIPipeMergeTablesDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI that merges tables

JIPipeMergeTablesDialogUI(JIPipeTableEditor) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeMergeTablesDialogUI

Creates new instance

JIPipeMergingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMergingDataBatch instead.

JIPipeMergingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Creates a new instance

JIPipeMergingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Creates a new instance

JIPipeMergingAlgorithm(JIPipeMergingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Copies the algorithm

JIPipeMergingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes

JIPipeMergingDataBatch - Class in org.hkijena.jipipe.api.nodes

Wraps a set of input and output slots that belong together.

JIPipeMergingDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Creates a new interface

JIPipeMergingDataBatch(JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Creates a copy

JIPipeMergingDataBatchBuilder - Class in org.hkijena.jipipe.api.nodes

Class that generates a JIPipeMergingDataBatch or JIPipeDataBatch instance.

JIPipeMergingDataBatchBuilder() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

JIPipeMetadata - Class in org.hkijena.jipipe.api

JSON-serializable project metadata

JIPipeMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata

Creates new empty instance

JIPipeMetadata(JIPipeMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata

Copies metadata

JIPipeMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI when multiple algorithms are selected

JIPipeMultiAlgorithmSelectionPanelUI(JIPipeProjectWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeMultiAlgorithmSelectionPanelUI

JIPipeMultiCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments

UI when multiple JIPipeProjectCompartment instances are selected

JIPipeMultiCompartmentSelectionPanelUI(JIPipeProjectWorkbench, Set<JIPipeProjectCompartment>, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeMultiCompartmentSelectionPanelUI

JIPipeMutableDependency - Class in org.hkijena.jipipe

A JSON-serializable JIPipeDependency.

JIPipeMutableDependency() - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency

Creates a new instance

JIPipeMutableDependency(JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency

Copies the dependency

JIPipeMutableNodeInfo - Class in org.hkijena.jipipe.api.nodes

Instantiates JIPipeGraphNode instances

JIPipeMutableNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

JIPipeMutableParameterAccess - Class in org.hkijena.jipipe.api.parameters

A mutable implementation of JIPipeParameterAccess

JIPipeMutableParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new instance

JIPipeMutableParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new independent parameter from the provided access

JIPipeMutableParameterAccess(JIPipeParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Creates a new instance

JIPipeMutableParameterAccess(JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Copies the parameter access

JIPipeMutableParameterAccess.Deserializer - Class in org.hkijena.jipipe.api.parameters

Deserializes JIPipeMutableParameterAccess

JIPipeMutableSlotConfiguration - Interface in org.hkijena.jipipe.api.data

A slot configuration that can be changed.

JIPipeNamedParameterCollection - Interface in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that comes with a predefined name

JIPipeNodeGroupUI - Class in org.hkijena.jipipe.ui.grouping

Editor for a NodeGroup Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content

JIPipeNodeGroupUI(JIPipeWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Creates a new editor

JIPipeNodeInfo - Interface in org.hkijena.jipipe.api.nodes

Describes an JIPipeGraphNode

JIPipeNodeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renderer for JIPipeNodeInfo

JIPipeNodeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer

Creates a new renderer

JIPipeNodeInfoPicker - Class in org.hkijena.jipipe.ui.components

Panel that allows to pick JIPipeNodeInfo

JIPipeNodeInfoPicker(JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

JIPipeNodeInfoPicker.AlgorithmDeselectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is deselected

JIPipeNodeInfoPicker.Mode - Enum in org.hkijena.jipipe.ui.components

The mode of the picker

JIPipeNodeInfoPicker.NodeSelectedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeNodeInfoPicker.Renderer - Class in org.hkijena.jipipe.ui.components

Renders the entries

JIPipeNodeInfoPicker.SelectedTraitsChangedEvent - Class in org.hkijena.jipipe.ui.components

Generated when a trait is selected

JIPipeNodeInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references

A parameter that holds a reference to an JIPipeNodeInfo

JIPipeNodeInfoRef(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

JIPipeNodeInfoRef(JIPipeNodeInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

Creates a copy

JIPipeNodeInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

New instance

JIPipeNodeInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references

Deserializes the reference from a string

JIPipeNodeInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references

Serializes the reference as ID

JIPipeNodeInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

Parameter for JIPipeNodeInfoRef

JIPipeNodeInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

JIPipeNodeRegistrationTask - Interface in org.hkijena.jipipe.api.registries

A task for algorithm registration that can handle algorithm dependencies

JIPipeNodeRegistry - Class in org.hkijena.jipipe.api.registries

Manages known algorithms and their annotations

JIPipeNodeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Creates a new registry

JIPipeNodeTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders JIPipeGraphNode instances in a table cell

JIPipeNodeTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer

Creates a new renderer

JIPipeNodeTypeCategory - Interface in org.hkijena.jipipe.api.nodes

Describes a node category

JIPipeNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

UI around an JIPipeGraphNode instance

JIPipeNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode, JIPipeGraphViewMode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Creates a new UI

JIPipeNodeUI.AlgorithmEvent - Class in org.hkijena.jipipe.ui.grapheditor

An event around JIPipeNodeUI

JIPipeOpenTableFromImageJDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer

UI that merges tables

JIPipeOpenTableFromImageJDialogUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeOpenTableFromImageJDialogUI

Creates new instance

JIPipeOrganization - Annotation Type in org.hkijena.jipipe.api

Annotations used for organizing elements

JIPipeOutputData - Class in org.hkijena.jipipe.extensions.utils.datatypes

JIPipeOutputData(Path) - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData

Initializes file data from a file

JIPipeOutputData(String) - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData

JIPipeOutputSlot - Annotation Type in org.hkijena.jipipe.api.nodes

Annotates an JIPipeGraphNode with an output slot.

JIPipeOutputSlots - Annotation Type in org.hkijena.jipipe.api.nodes

Required to allow multiple JIPipeOutputSlot

JIPipeParallelizedAlgorithm - Interface in org.hkijena.jipipe.api.nodes

Algorithm that supports parallelization

JIPipeParameter - Annotation Type in org.hkijena.jipipe.api.parameters

Annotates a getter or setter function as parameter.

JIPipeParameterAccess - Interface in org.hkijena.jipipe.api.parameters

Interface around accessing a parameter

JIPipeParameterCollection - Interface in org.hkijena.jipipe.api.parameters

Interfaced for a parameterized object

JIPipeParameterCollection.ParameterChangedEvent - Class in org.hkijena.jipipe.api.parameters

Triggered when a parameter holder's parameters are changed

JIPipeParameterCollection.ParameterStructureChangedEvent - Class in org.hkijena.jipipe.api.parameters

Triggered by an JIPipeParameterCollection if the list of available parameters is changed

JIPipeParameterCollectionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util

JIPipeParameterCollectionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

Creates new instance

JIPipeParameterCollectionVisibilities - Class in org.hkijena.jipipe.api.parameters

Used as parameter to control the visibility of an existing parameter collection

JIPipeParameterCollectionVisibilities() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Creates new instance

JIPipeParameterCollectionVisibilities(JIPipeParameterCollectionVisibilities) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Creates a copy

JIPipeParameterCollectionVisibilitiesParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors

UI around JIPipeParameterCollectionVisibilities

JIPipeParameterCollectionVisibilitiesParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

Creates new instance

JIPipeParameterEditorUI - Class in org.hkijena.jipipe.ui.parameters

A UI for a parameter type

JIPipeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Creates new instance

JIPipeParameterGeneratorUI - Class in org.hkijena.jipipe.ui.parameters

UI that generates a set of parameter values

JIPipeParameterGeneratorUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI

Creates a new instance

JIPipeParameterPersistence - Enum in org.hkijena.jipipe.api.parameters

Determines how a parameter is serialized

JIPipeParameterSlotAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets.

JIPipeParameterSlotAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm(JIPipeParameterSlotAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings - Class in org.hkijena.jipipe.api.nodes

Groups parameter slot settings

JIPipeParameterTree - Class in org.hkijena.jipipe.api.parameters

An JIPipeParameterCollection that contains all the parameters of one or multiple JIPipeParameterCollection instances in a traversed form.

JIPipeParameterTree() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

JIPipeParameterTree(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Creates a new instance with a predefined root parameter

JIPipeParameterTree(JIPipeParameterCollection, int) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Creates a new instance with a predefined root parameter

JIPipeParameterTree.ContextAction - Class in org.hkijena.jipipe.api.parameters

JIPipeParameterTree.Node - Class in org.hkijena.jipipe.api.parameters

A node

JIPipeParameterTypeInfo - Interface in org.hkijena.jipipe.api.parameters

A type that describes a JIPipe parameter type

JIPipeParameterTypeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components

JIPipeParameterTypeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer

JIPipeParameterTypeRegistry - Class in org.hkijena.jipipe.api.registries

Registry for all known parameter types

JIPipeParameterTypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

JIPipeParameterVisibility - Enum in org.hkijena.jipipe.api.parameters

Defines the visibility of a parameter

JIPipePlotAvailableDataManagerUI - Class in org.hkijena.jipipe.ui.plotbuilder

Manages available data sets of a plot builder

JIPipePlotAvailableDataManagerUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

JIPipePlotBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder

User interface for displaying and creating plots

JIPipePlotBuilderUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

JIPipePlotSeriesBuilder - Class in org.hkijena.jipipe.ui.plotbuilder

Constructs a series from a set of columns

JIPipePlotSeriesBuilder(JIPipePlotBuilderUI, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Creates a new instance

JIPipePlotSeriesBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder

UI for JIPipePlotSeriesBuilder

JIPipePlotSeriesBuilderUI(JIPipeWorkbench, JIPipePlotSeriesBuilder) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilderUI

JIPipePlotSeriesListEditorUI - Class in org.hkijena.jipipe.ui.plotbuilder

Manages the list of series in a JIPipePlotBuilderUI

JIPipePlotSeriesListEditorUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Creates a new instance

JIPipePluginManagerUIPanel - Class in org.hkijena.jipipe.ui.extensions

UI that lists all plugins

JIPipePluginManagerUIPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

JIPipePluginValidityCheckerButton - Class in org.hkijena.jipipe.ui.extensions

Button that checks the plugin validity and shows the report if clicked

JIPipePluginValidityCheckerButton() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Creates new instance

JIPipePluginValidityCheckerPanel - Class in org.hkijena.jipipe.ui.extensions

Panel that checks plugin validity

JIPipePluginValidityCheckerPanel() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel

Creates new instance

JIPipePrepackagedDefaultJavaExtension - Class in org.hkijena.jipipe.extensions

JIPipeDefaultJavaExtension for internal usage

JIPipePrepackagedDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension

JIPipeProgressInfo - Class in org.hkijena.jipipe.api

This object is available inside a JIPipeRunnable and contains methods to report progress, logs, and request cancellation.

JIPipeProgressInfo() - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo

JIPipeProgressInfo(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo

JIPipeProgressInfo.StatusUpdatedEvent - Class in org.hkijena.jipipe.api

JIPipeProject - Class in org.hkijena.jipipe.api

A JIPipe project.

JIPipeProject() - Constructor for class org.hkijena.jipipe.api.JIPipeProject

A JIPipe project

JIPipeProject.CompartmentAddedEvent - Class in org.hkijena.jipipe.api

Triggered when a sample is added to an JIPipeProject

JIPipeProject.CompartmentRemovedEvent - Class in org.hkijena.jipipe.api

Triggered when a sample is removed from an JIPipeProject

JIPipeProject.CompartmentRenamedEvent - Class in org.hkijena.jipipe.api

Triggered when a sample in an JIPipeProject is renamed

JIPipeProject.Deserializer - Class in org.hkijena.jipipe.api

Deserializes a project

JIPipeProject.Serializer - Class in org.hkijena.jipipe.api

Serializes a project

JIPipeProject.WorkDirectoryChangedEvent - Class in org.hkijena.jipipe.api

Triggered when the work directory of a project or algorithm was changed

JIPipeProjectCache - Class in org.hkijena.jipipe.api

A structure that manages cached data

JIPipeProjectCache(JIPipeProject) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache

Creates a new instance

JIPipeProjectCache.ModifiedEvent - Class in org.hkijena.jipipe.api

Event that is triggered when the cache was modified (something stored or removed)

JIPipeProjectCacheQuery - Class in org.hkijena.jipipe.api

A query that allows to access a JIPipeProjectCache.

JIPipeProjectCacheQuery(JIPipeProject) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

JIPipeProjectCacheState - Class in org.hkijena.jipipe.api

Encapsulates a state

JIPipeProjectCacheState(JIPipeGraphNode, Set<JIPipeProjectCacheState>, LocalDateTime) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCacheState

Creates a new instance

JIPipeProjectCompartment - Class in org.hkijena.jipipe.api.compartments.algorithms

A project compartment.

JIPipeProjectCompartment(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Creates new instance

JIPipeProjectCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Copies the compartment

JIPipeProjectCompartmentTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders an JIPipeProjectCompartment cell

JIPipeProjectCompartmentTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer

Creates new instance

JIPipeProjectInfoParameters - Class in org.hkijena.jipipe.ui.settings

Additional metadata that provides parameter references for JIPipeProjectInfoUI

JIPipeProjectInfoParameters() - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

JIPipeProjectInfoUI - Class in org.hkijena.jipipe.ui

UI that gives an overview of a pipeline (shows parameters, etc.)

JIPipeProjectInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectInfoUI

Creates a new instance

JIPipeProjectMetadata - Class in org.hkijena.jipipe.api

Metadata for a JIPipeProject

JIPipeProjectMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectMetadata

JIPipeProjectOutputTreePanel - Class in org.hkijena.jipipe.ui.components

Displays a tree where the user can select data slots

JIPipeProjectOutputTreePanel(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeProjectOutputTreePanel

JIPipeProjectParameterDefinition - Class in org.hkijena.jipipe.extensions.utils.algorithms

JIPipeProjectParameterDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition

JIPipeProjectParameterDefinition(ParametersDataTableDefinition) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition

JIPipeProjectSettingsUI - Class in org.hkijena.jipipe.ui.settings

UI around the metadata of an JIPipeProject

JIPipeProjectSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectSettingsUI

JIPipeProjectTabMetadata - Class in org.hkijena.jipipe.ui.project

Metadata that allows the restoration of tabs

JIPipeProjectTabMetadata() - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

JIPipeProjectTabMetadata(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

JIPipeProjectTemplate - Class in org.hkijena.jipipe.api

A reference to a template project

JIPipeProjectTemplate() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectTemplate

JIPipeProjectWindow - Class in org.hkijena.jipipe.ui

Window that holds an JIPipeProjectWorkbench instance

JIPipeProjectWindow(Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWindow

JIPipeProjectWorkbench - Class in org.hkijena.jipipe.ui

UI around an JIPipeProject

JIPipeProjectWorkbench(JIPipeProjectWindow, Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

JIPipeProjectWorkbenchPanel - Class in org.hkijena.jipipe.ui

Panel that holds a reference to JIPipeProjectWorkbench

JIPipeProjectWorkbenchPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel

JIPipeReflectionParameterAccess - Class in org.hkijena.jipipe.api.parameters

JIPipeParameterAccess generated from reflection

JIPipeReflectionParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

JIPipeRegistry - Interface in org.hkijena.jipipe

Contains all JIPipe resources

JIPipeRegistryIssues - Class in org.hkijena.jipipe

Class that describes issues with the current registration process

JIPipeRegistryIssues() - Constructor for class org.hkijena.jipipe.JIPipeRegistryIssues

JIPipeResultAlgorithmTree - Class in org.hkijena.jipipe.ui.resultanalysis

Displays a tree where the user can select data slots

JIPipeResultAlgorithmTree(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree

JIPipeResultCopyFilesByMetadataExporterRun - Class in org.hkijena.jipipe.ui.resultanalysis

JIPipeResultCopyFilesByMetadataExporterRun(JIPipeWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

JIPipeResultDataSlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis

Renders a JIPipeDataSlot row as table cell.

JIPipeResultDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Creates a new renderer

JIPipeResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis

A UI that contains various actions for importing/processing output data Please note that the data is not present in the data slot anymore at this point, but instead stored in output files.

JIPipeResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI

JIPipeResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis

UI that displays the JIPipeExportedDataTable of an JIPipeDataSlot

JIPipeResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotTableUI

JIPipeResultSlotDataSource - Class in org.hkijena.jipipe.api.data

Data from a slot inside a result folder

JIPipeResultSlotDataSource(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Constructor for class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource

JIPipeResultTreeCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the tree in JIPipeResultAlgorithmTree

JIPipeResultTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer

Creates new renderer

JIPipeResultUI - Class in org.hkijena.jipipe.ui.resultanalysis

UI around an JIPipeRun result

JIPipeResultUI(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI

JIPipeRowDataMergedTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders data in JIPipeMergedExportedDataTable

JIPipeRowDataMergedTableCellRenderer(JIPipeProjectWorkbench, JIPipeMergedExportedDataTable, JScrollPane, JTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer

JIPipeRowDataTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders row data of an JIPipeExportedDataTable

JIPipeRowDataTableCellRenderer(JIPipeProjectWorkbench, JIPipeDataSlot, JTable, JScrollPane) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer

JIPipeRowIndexTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders the location of of JIPipeExportedDataTable and JIPipeMergedExportedDataTable

JIPipeRowIndexTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer

Creates new renderer

JIPipeRun - Class in org.hkijena.jipipe.api

Runnable instance of an JIPipeProject

JIPipeRun(JIPipeProject, JIPipeRunSettings) - Constructor for class org.hkijena.jipipe.api.JIPipeRun

JIPipeRunAlgorithmCommand - Class in org.hkijena.jipipe

Runs a JIPipe algorithm on a single data set.

JIPipeRunAlgorithmCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

JIPipeRunCommand - Class in org.hkijena.jipipe

Command that runs a JIPipe project without GUI

JIPipeRunCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunCommand

JIPipeRunExecuterUI - Class in org.hkijena.jipipe.installer.linux.ui.utils

UI that executes an JIPipeRunnable

JIPipeRunExecuterUI(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

JIPipeRunExecuterUI - Class in org.hkijena.jipipe.ui.running

UI that executes an JIPipeRunnable

JIPipeRunExecuterUI(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

JIPipeRunnable - Interface in org.hkijena.jipipe.api

Runnable that can be scheduled, canceled, and reports progress

JIPipeRunnable - Interface in org.hkijena.jipipe.installer.linux.api

Runnable that can be scheduled, canceled, and reports progress

JIPipeRunnerQueue - Class in org.hkijena.jipipe.installer.linux.ui.utils

Queue for JIPipeRunnable

JIPipeRunnerQueue - Class in org.hkijena.jipipe.ui.running

Queue for JIPipeRunnable

JIPipeRunnerQueueUI - Class in org.hkijena.jipipe.ui.running

UI that monitors the queue

JIPipeRunnerQueueUI() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Creates new instance

JIPipeRunnerStatus - Class in org.hkijena.jipipe.installer.linux.api

Status of a runner

JIPipeRunnerStatus(int, int, String) - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus

JIPipeRunnerSubStatus - Class in org.hkijena.jipipe.installer.linux.api

A nestable

JIPipeRunnerSubStatus() - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus

JIPipeRunnerSubStatus(String...) - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus

JIPipeRunQueuePanelUI - Class in org.hkijena.jipipe.ui.running

UI that executes an JIPipeRunnable

JIPipeRunQueuePanelUI() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

JIPipeRunSettings - Class in org.hkijena.jipipe.api

Settings for an JIPipeRun

JIPipeRunSettings() - Constructor for class org.hkijena.jipipe.api.JIPipeRunSettings

JIPipeRunSettingsUI - Class in org.hkijena.jipipe.ui.running

Settings UI for JIPipeRunSettings

JIPipeRunSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

JIPipeRunWorker - Class in org.hkijena.jipipe.installer.linux.ui.utils

A worker

JIPipeRunWorker(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

JIPipeRunWorker - Class in org.hkijena.jipipe.ui.running

A worker

JIPipeRunWorker(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunWorker

JIPipeSettingsRegistry - Class in org.hkijena.jipipe.api.registries

Registry for settings.

JIPipeSettingsRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

JIPipeSettingsRegistry.Sheet - Class in org.hkijena.jipipe.api.registries

A settings sheet

JIPipeSimpleIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes

An JIPipeAlgorithm that iterates through each data row.

JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Creates a new instance

JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Creates a new instance

JIPipeSimpleIteratingAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Copies the algorithm

JIPipeSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI for a single JIPipeGraphNode

JIPipeSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

JIPipeSingleCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments

UI for a single JIPipeProjectCompartment

JIPipeSingleCompartmentSelectionPanelUI(JIPipeGraphEditorUI, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI

JIPipeSlotConfiguration - Interface in org.hkijena.jipipe.api.data

A slot configuration determines which slots an JIPipeGraphNode should have.

JIPipeSlotConfiguration.Serializer - Class in org.hkijena.jipipe.api.data

Serializes the configuration

JIPipeSlotConfiguration.SlotsChangedEvent - Class in org.hkijena.jipipe.api.data

Triggered when a JIPipeSlotConfiguration was changed

JIPipeSlotEditorUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

An extended slot editor that is more powerful than the "in-place" slot editor

JIPipeSlotEditorUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

JIPipeSlotType - Enum in org.hkijena.jipipe.api.data

The slot type

JIPipeTableEditor - Class in org.hkijena.jipipe.ui.tableanalyzer

Spreadsheet UI

JIPipeTableEditor(JIPipeWorkbench, ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

JIPipeTableImporterDialog - Class in org.hkijena.jipipe.ui.tableanalyzer

Dialog to import a table

JIPipeTableImporterDialog(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableImporterDialog

JIPipeTemplateSelectionDialog - Class in org.hkijena.jipipe.ui.project

Dialog for selecting templates

JIPipeTemplateSelectionDialog(Window) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog

JIPipeTestBench - Class in org.hkijena.jipipe.api.testbench

Allows to test one algorithm with multiple parameters

JIPipeTestBench(JIPipeProject, JIPipeGraphNode, JIPipeTestBenchSettings) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBench

JIPipeTestBenchSettings - Class in org.hkijena.jipipe.api.testbench

Settings for JIPipeTestBench

JIPipeTestBenchSettings() - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

Creates a new instance

JIPipeTestBenchSetupUI - Class in org.hkijena.jipipe.ui.grapheditor.settings

UI for generating JIPipeTestBench

JIPipeTestBenchSetupUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

JIPipeTestbenchSnapshot - Class in org.hkijena.jipipe.api.testbench

Used by the quick run to backup output data

JIPipeTestbenchSnapshot(JIPipeTestBench) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

JIPipeTestbenchSnapshot.AlgorithmBackup - Class in org.hkijena.jipipe.api.testbench

Backups parameters and storage paths

JIPipeTestBenchUI - Class in org.hkijena.jipipe.ui.testbench

UI for JIPipeTestBench

JIPipeTestBenchUI(JIPipeProjectWorkbench, JIPipeTestBench) - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

JIPipeTextEditor - Class in org.hkijena.jipipe.ui.texteditor

JIPipeTextEditor(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

JIPipeTraitTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis

Renders JIPipeAnnotation

JIPipeTraitTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer

Creates a new renderer

JIPipeUITheme - Enum in org.hkijena.jipipe.ui.theme

JIPipeValidatable - Interface in org.hkijena.jipipe.api

An interface about a type that reports of the validity of its internal state

JIPipeValidityReport - Class in org.hkijena.jipipe.api

Report about the validity of an object

JIPipeValidityReport() - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport

Creates a new report instance

JIPipeValidityReport.Message - Class in org.hkijena.jipipe.api

A validity report message

JIPipeValidityReport.Response - Enum in org.hkijena.jipipe.api

The response type

JIPipeValidityReportUI - Class in org.hkijena.jipipe.ui.components

UI for an JIPipeValidityReport

JIPipeValidityReportUI(boolean) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

JIPipeValidityReportUI(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

JIPipeVerticalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor

Slot UI with horizontal direction

JIPipeVerticalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

Creates a new UI

JIPipeVerticalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor

An algorithm UI for vertical display

JIPipeVerticalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

Creates a new UI

JIPipeVirtualData - Class in org.hkijena.jipipe.api.data

Manages virtual data

JIPipeVirtualData(JIPipeData) - Constructor for class org.hkijena.jipipe.api.data.JIPipeVirtualData

Create virtual data from data

JIPipeVirtualData(Class<? extends JIPipeData>, Path, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeVirtualData

Creates a custom virtual data.

JIPipeWorkbench - Interface in org.hkijena.jipipe.ui

Interface shared by all workbench UIs

JIPipeWorkbenchPanel - Class in org.hkijena.jipipe.ui

Panel that contains a reference to its parent workbench

JIPipeWorkbenchPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel

JsonAlgorithm - Class in org.hkijena.jipipe.api.grouping

An algorithm that was imported from a Json extension.

JsonAlgorithm(JsonNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Creates a new instance

JsonAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Makes a copy

JsonAlgorithmToGroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

JsonAlgorithmToGroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

JsonData - Class in org.hkijena.jipipe.extensions.strings

JsonData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData

JsonData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData

JsonDeserializable - Interface in org.hkijena.jipipe.utils

Allows the object to be deserialized in-place from JSON data

JsonExtensionContentListCellRenderer - Class in org.hkijena.jipipe.ui.extensionbuilder

Renders the contents of a JIPipeJsonExtension

JsonExtensionContentListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer

Creates a new renderer

JsonExtensionLoaderExtension - Class in org.hkijena.jipipe.extensions.jsonextensionloader

Extension that loads JIPipeJsonExtension

JsonExtensionLoaderExtension() - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

JsonExtensionRegistrationTask - Class in org.hkijena.jipipe.extensions.jsonextensionloader

Registers a JIPipeJsonExtension

JsonExtensionRegistrationTask(JIPipe, Path, JsonNode) - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

jsonify(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Removes all spaces, and filesystem-unsafe characters from the string and replaces them with dashes Duplicate dashes are removed

jsonify(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Removes all spaces, and filesystem-unsafe characters from the string and replaces them with dashes Duplicate dashes are removed

JsonNodeInfo - Class in org.hkijena.jipipe.api.grouping

Info of a GraphWrapperAlgorithm

JsonNodeInfo() - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Creates a new info

JsonNodeInfo(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Creates a new JsonNodeInfo from a NodeGroup

JsonNodeInfoUI - Class in org.hkijena.jipipe.ui.extensionbuilder

UI around a JsonNodeInfo

JsonNodeInfoUI(JIPipeJsonExtensionWorkbench, JsonNodeInfo) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI

JsonNodeRegistrationTask - Class in org.hkijena.jipipe.api.grouping

Registers a JsonNodeInfo

JsonNodeRegistrationTask(JsonNode, JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask

JsonUtils - Class in org.hkijena.jipipe.utils

Global utilities for JSON data

K

KEY_DATA - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Path key for data

KEY_PARAMETER - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Path key for any parameter

KEY_PROJECT - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Path key for project locations

KEY_STROKE_AUTO_LAYOUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_NAVIGATE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_REDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_UNDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_IN - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_OUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KEY_STROKE_ZOOM_RESET - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

KeyDeserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer

L

LaplacianSharpen2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

Wrapper around ImageProcessor

LaplacianSharpen2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

Instantiates a new node type.

LaplacianSharpen2DAlgorithm(LaplacianSharpen2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

Instantiates a new node type.

LargeScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts

An editor for ScriptParameter

LargeScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

Creates new instance

LengthFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

LengthFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction

LIGHT_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

LIGHT_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

LIGHT_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

LIGHTEST_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

LineCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

Creates a new instance

LineCategoryPlotData(LineCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

Creates a copy

LineStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

Creates a new instance

LineStatisticalCategoryPlotData(LineStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

Creates a copy

LineXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

LineXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

Creates a new instance

LineXYPlotData(LineXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

Creates a copy

List() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

Creates a new instance

List(Collection<JIPipeAuthorMetadata>) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

Makes a copy

List() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter.List

List(HyperstackDimensionPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter.List

List() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Creates a new instance

List(MeasurementColumnSortOrder.List) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression.List

List(NamedAnnotationGeneratorExpression.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression.List

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List

List(NamedStringQueryExpression.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List

Creates new instance

List(StringPatternExtractionFunction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter.List

Creates a new instance

List(DoubleAndDoublePairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter.List

Creates a new instance

List(IntegerAndIntegerPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter.List

Creates a new instance

List(IntRangeAndIntegerPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter.List

Creates a new instance

List(StringAndStringPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter.List

Creates a new instance

List(StringQueryExpressionAndSortOrderPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter.List

Creates a new instance

List(StringQueryExpressionAndStringPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter.List

Creates a new instance

List(StringQueryExpressionAndStringQueryPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List

Creates a new instance

List(StringPatternExtraction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List

Creates a new instance

List(StringOrDouble.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List

Creates a new instance

List(Margin.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List

Creates a copy

List() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency.List

ListFiles - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that lists files in each folder

ListFiles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

Creates new instance

ListFiles(ListFiles) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

Copies the algorithm

listIssues() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

ListParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

A parameter that is a collection of another parameter type

ListParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

ListParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

Deserializes the parameter

ListParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.collections

Serializes the parameter

ListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.collections

Generic parameter for ListParameter

ListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

Creates new instance

ListParameterItemParameterAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter access for one entry in ListParameter

ListParameterItemParameterAccess(JIPipeParameterAccess, List<T>, Class<T>, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

Creates a new instance

ListSelectionMode - Enum in org.hkijena.jipipe.utils

Enum wrapper for ListSelectionModel modes

ListSubfolders - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithms that lists the sub folders for each input folder

ListSubfolders(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

Creates a new instance

ListSubfolders(ListSubfolders) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

Copies the algorithm

listTemplates() - Static method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

Lists all available templates

LnColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a logarithm (base e) function

LnColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation

load() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

Loads the project

load(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Loads settings from the specified file

loadData(Path) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreview

loadData(Path) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview

Run in a different thread.

loadDependenciesFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Deserializes the set of project dependencies from JSON.

loadFromFolder(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeRun

Loads a JIPipeRun from a folder

loadFromJson(Path) - Static method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Loads the table from JSON

loadLookAndFeelFromSettings() - Static method in class org.hkijena.jipipe.utils.UIUtils

Attempts to override the look and feel based on the JIPipe settings

loadLUTFromImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

loadMetadataFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Deserializes the project metadata from JSON

loadProject(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeProject

Loads a project from a file

loadProject(Path) - Static method in class org.hkijena.jipipe.JIPipe

Loads a project

loadProject(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.JIPipe

Loads a project

loadProject(JsonNode) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension

Loads a JIPipeJsonExtension from JSON

loadProject(Path) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension

Loads an extension from a file

loadProject(JIPipeJsonExtension, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Loads a project into the window and replaces the current project

loadProject(JIPipeProject, boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Loads a project into the window

loadRoiListFromFile(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Loads a set of ROI from a zip file

LocalMaxima2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Wrapper around MaximumFinder

LocalMaxima2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

Instantiates a new node type.

LocalMaxima2DAlgorithm(LocalMaxima2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

Creates a copy

LocalMaxima2DAlgorithm.OutputType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Available output types

LocalMaximumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMaximumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

Instantiates a new node type.

LocalMaximumFilter2DAlgorithm(LocalMaximumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

Instantiates a new node type.

LocalMaximumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMaximumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

Instantiates a new node type.

LocalMaximumFilter3DAlgorithm(LocalMaximumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

Instantiates a new node type.

LocalMinimumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMinimumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

Instantiates a new node type.

LocalMinimumFilter2DAlgorithm(LocalMinimumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

Instantiates a new node type.

LocalMinimumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalMinimumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

Instantiates a new node type.

LocalMinimumFilter3DAlgorithm(LocalMinimumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

Instantiates a new node type.

LocalVarianceFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalVarianceFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

Instantiates a new node type.

LocalVarianceFilter2DAlgorithm(LocalVarianceFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

Instantiates a new node type.

LocalVarianceFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

LocalVarianceFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

Instantiates a new node type.

LocalVarianceFilter3DAlgorithm(LocalVarianceFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

Instantiates a new node type.

log(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

Log10ColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a logarithm (base 10) function

Log10ColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation

LogEntry(String, LocalDateTime, String, boolean) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry

LogEntryRenderer() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntryRenderer

logicalAnd() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical AND operation to all Roi in this list.

LogicalAndOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

LogicalAndOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator

LogicalNotOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

LogicalNotOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator

LogicalOperation - Enum in org.hkijena.jipipe.extensions.parameters.util

Available operations

logicalOr() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical OR operation to all Roi in this list.

LogicalOrOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

LogicalOrOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator

logicalXor() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Applies a logical XOR operation on the list of Roi.

LogicalXOrOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

LogicalXOrOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator

LongList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of Long

LongList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongList

Creates a new empty list

LongList(LongList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongList

Creates a copy

LongParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Long

LongParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

LongPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Long

LongPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

LongRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Long

LongRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.LongRangeParameterGenerator

Creates a new instance

LUTInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

LUTInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

LUTInverterAlgorithm(LUTInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

M

MacroFlag - Class in org.hkijena.jipipe.utils

Helper for optional macro flags

MacroFlag(String, boolean) - Constructor for class org.hkijena.jipipe.utils.MacroFlag

MacroSetting - Class in org.hkijena.jipipe.utils

Helper class for ImageJ macro parameters

MacroSetting(String, Object) - Constructor for class org.hkijena.jipipe.utils.MacroSetting

MacroUtils - Class in org.hkijena.jipipe.utils

Utility functions for macros

MacroWrapperAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

An algorithm that wraps around an ImageJ macro

MacroWrapperAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

MacroWrapperAlgorithm(MacroWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

Copies the algorithm

Main - Class in org.hkijena.ijupdatercli

Main() - Constructor for class org.hkijena.ijupdatercli.Main

main(String[]) - Static method in class org.hkijena.ijupdatercli.Main

main(String[]) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

main(String[]) - Static method in class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil

main(String[]) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

Main - Class in org.hkijena.jipipe.installer.linux

Main() - Constructor for class org.hkijena.jipipe.installer.linux.Main

main(String[]) - Static method in class org.hkijena.jipipe.installer.linux.Main

main(String...) - Static method in class org.hkijena.jipipe.JIPipeGUICommand

main(String...) - Static method in class org.hkijena.jipipe.JIPipeLauncher

main(String[]) - Static method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

main(String[]) - Static method in class org.hkijena.jipipe.ui.components.SplashScreen

main(String[]) - Static method in class org.hkijena.jipipe.utils.NaturalOrderComparator

MainWindow - Class in org.hkijena.jipipe.installer.linux.ui

MainWindow() - Constructor for class org.hkijena.jipipe.installer.linux.ui.MainWindow

makeBorderlessReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text pane (that can do HTML)

makeBorderlessWithoutMargin(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Makes a component borderless

makeBorderlessWithoutMargin(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a component borderless

makeDataNonVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Loads all virtual data into memory

makeDataVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Unloads all data into the virtual cache

makeFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Replaces all characters invalid for filesystems with spaces Assumes that the string is a filename, so path operators are not allowed.

makeFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Replaces all characters invalid for filesystems with spaces Assumes that the string is a filename, so path operators are not allowed.

makeFlat(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Makes a button flat

makeFlat(AbstractButton, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Makes a button flat

makeFlat(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat

makeFlat(AbstractButton, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat

makeFlat25x25(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Makes a button flat and 25x25 size

makeFlat25x25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat and 25x25 size

makeFlatH25(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Makes a button flat and have a height of 25px

makeFlatH25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a button flat and have a height of 25px

makeMacroCompatible(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils

Makes a string macro-compatible

makeMarkdownReader(MarkdownDocument, String[]) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a JTextPane that displays Markdown content

makeMontage2(List<ImagePlus>, List<String>, int, int, double, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

Creates a montage and returns it as an ImagePlus.

makeMontage2(ImagePlus, int, int, double, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

Creates a montage and returns it as an ImagePlus.

makeNonVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

makeNonVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Makes the whole cache virtual

makeReadonlyBorderlessTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text area

makeReadonlyBorderlessTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text field

makeReadonlyTextArea(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Creates a readonly text area Cannot do HTML.

makeReadonlyTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text area Cannot do HTML.

makeReadonlyTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text field

makeReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Creates a readonly text pane (that can do HTML)

makeToggleReadonly(JToggleButton) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a toggle button readonly without greying it out

makeUniqueString(String, String, Collection<String>) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeUniqueString(String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeUniqueString(String, String, Collection<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeUniqueString(String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils

Makes an unique string by adding a counting variable to its end if it already exists

makeURLLabel(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Makes a label that contains a URL and opens the URL when clicked

makeVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData

Makes the data virtual if not already

makeVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Makes the whole cache virtual

ManagerUI - Class in org.hkijena.jipipe.ui.ijupdater

ManagerUI(JIPipeWorkbench, JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ManagerUI

ManualThreshold16U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Wrapper around ImageProcessor

ManualThreshold16U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

Instantiates a new node type.

ManualThreshold16U2DAlgorithm(ManualThreshold16U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

Instantiates a new node type.

ManualThreshold8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Wrapper around ImageProcessor

ManualThreshold8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

Instantiates a new node type.

ManualThreshold8U2DAlgorithm(ManualThreshold8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

Instantiates a new node type.

mapToAnnotationList(Map<String, String>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Converts an annotation map to a list

Margin - Class in org.hkijena.jipipe.extensions.parameters.roi

Parameter that allows users to define a rectangle ROI.

Margin() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin

Creates a new instance

Margin(Margin) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin

Creates a copy

Margin.List - Class in org.hkijena.jipipe.extensions.parameters.roi

List parameter of Margin

MarginParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for Margin

MarginParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

MarkdownDocument - Class in org.hkijena.jipipe.installer.linux.ui.utils

Contains Markdown data

MarkdownDocument(String) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument

MarkdownDocument - Class in org.hkijena.jipipe.ui.components

Contains Markdown data

MarkdownDocument(String) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownDocument

MarkdownReader - Class in org.hkijena.jipipe.installer.linux.ui.utils

Panel that allows reading of Markdown data

MarkdownReader() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

MarkdownReader(MarkdownDocument) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

MarkdownReader - Class in org.hkijena.jipipe.ui.components

Panel that allows reading of Markdown data

MarkdownReader(boolean) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader

MarkdownReader(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader

MaskToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

MaskToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

MaskToRoiAlgorithm(MaskToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

matches(Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Returns if the action shows up

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

Matrix2D<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix

A 2D matrix of floats

Matrix2D(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a new instance

Matrix2D(Matrix2D<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Creates a copy

Matrix2D.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix

Deserializes the parameter

Matrix2D.Serializer - Class in org.hkijena.jipipe.extensions.parameters.matrix

Serializes the parameter

Matrix2DFloat - Class in org.hkijena.jipipe.extensions.parameters.matrix

Matrix containing Float

Matrix2DFloat() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

Creates a new object

Matrix2DFloat(Matrix2DFloat) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat

Creates a copy

Matrix2DParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.matrix

Editor for Matrix2D

Matrix2DParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

Creates new instance

max - Variable in class org.hkijena.jipipe.utils.PointRange

maybeAddSeparator() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

measure(ImagePlus, ImageStatisticsSetParameter, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Generates ROI statistics

Measurement - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

Measurements defined by Measurements.

MeasurementColumn - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

Measurements defined by Measurements.

MeasurementColumnSortOrder - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A key-value pair parameter of MeasurementColumn to SortOrder

MeasurementColumnSortOrder() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a new instance

MeasurementColumnSortOrder(MeasurementColumnSortOrder) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder

Creates a copy

MeasurementColumnSortOrder.List - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A list of MeasurementColumnSortOrder

MeasurementExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

A variable source that contains the ImageJ measurements.

MeasurementExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource

MedianBlurFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around RankFilters

MedianBlurFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

Instantiates a new node type.

MedianBlurFilter2DAlgorithm(MedianBlurFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

Instantiates a new node type.

MedianBlurFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around GaussianBlur

MedianBlurFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

Instantiates a new node type.

MedianBlurFilter3DAlgorithm(MedianBlurFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

Instantiates a new node type.

MedianBlurGreyscale8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

MedianBlurGreyscale8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

Instantiates a new node type.

MedianBlurGreyscale8U2DAlgorithm(MedianBlurGreyscale8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

Instantiates a new node type.

MedianBlurRGB2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

Wrapper around ImageProcessor

MedianBlurRGB2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

Instantiates a new node type.

MedianBlurRGB2DAlgorithm(MedianBlurRGB2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

Instantiates a new node type.

MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

MeijeringVesselness2DFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

Applies CLAHE image enhancing

MeijeringVesselness2DFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

MeijeringVesselness2DFeatures(MeijeringVesselness2DFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

Copies the algorithm

MemoryStatusUI - Class in org.hkijena.jipipe.ui.components

Shows the current memory consumption

MemoryStatusUI() - Constructor for class org.hkijena.jipipe.ui.components.MemoryStatusUI

Creates a new instance

MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

menuBar - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

MenuExtension - Class in org.hkijena.jipipe.ui.extension

An extension for the extension builder or analysis tool menu.

MenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.extension.MenuExtension

Creates a new instance

MenuTarget - Enum in org.hkijena.jipipe.ui.extension

Determines in which menu a menu extension is placed

merge(Collection<JIPipeAnnotation>) - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Ensures that a list of annotations has unique names.

merge(String, String) - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Merges the new annotation value into the existing one according to the strategy

merge(JIPipeParameterCollection, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Merges parameters into a given node

MergeAnnotations - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations

MergeAnnotations(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

Creates a new instance

MergeAnnotations(MergeAnnotations) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

Creates a copy

MergeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ImageProcessor

MergeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

Instantiates a new node type.

MergeChannelsAlgorithm(MergeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

Instantiates a new node type.

MergeChannelsAlgorithm.ChannelColor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Color a slice can be mapped to

mergeColumns(List<Integer>, String, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a new column that consists of a combination of the selected values.

MergeColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

MergeColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

Creates a new instance

MergeColumnsAlgorithm(MergeColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

Creates a copy

MergeDataSlots - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Merges the input slot tables into one data slot

MergeDataSlots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

MergeDataSlots(MergeDataSlots) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

Copies the algorithm

MergeRoiListsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

MergeRoiListsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

Instantiates a new node type.

MergeRoiListsAlgorithm(MergeRoiListsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

Instantiates a new node type.

MergeTableColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

MergeTableColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

Creates a new instance

MergeTableColumnsAlgorithm(MergeTableColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

Creates a copy

MergeTableRowsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

MergeTableRowsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm

Creates a new instance

MergeTableRowsAlgorithm(MergeTableRowsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm

Creates a copy

mergeWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Merges another graph into this graph The input is not copied!

mergeWith(ROIListData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Merges the ROI from another data into this one.

MERGING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

MergingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

MergingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

Creates a new instance

MergingPythonScriptAlgorithm(MergingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

Creates a copy

Message(String, String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport.Message

Message(MessagePanel, MessagePanel.MessageType, String, JButton) - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel.Message

messageLogged(LogMessage) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

MessagePanel - Class in org.hkijena.jipipe.ui.components

Panel that carries multiple user-friendly messages

MessagePanel() - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel

MessagePanel.Message - Class in org.hkijena.jipipe.ui.components

MessagePanel.MessageType - Enum in org.hkijena.jipipe.ui.components

METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

min - Variable in class org.hkijena.jipipe.utils.PointRange

minimumLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

minTabWidth - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

MiscellaneousNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

MiscellaneousNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

MissingUpdateSiteResolver - Class in org.hkijena.jipipe.ui.ijupdater

MissingUpdateSiteResolver(Context, JIPipeRegistryIssues) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

ModernMetalTheme - Class in org.hkijena.jipipe.installer.linux.ui.utils

ModernMetalTheme() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

Creates an instance of OceanTheme

ModernMetalTheme - Class in org.hkijena.jipipe.ui.theme

ModernMetalTheme() - Constructor for class org.hkijena.jipipe.ui.theme.ModernMetalTheme

Creates an instance of OceanTheme

ModernSpinnerUI - Class in org.hkijena.jipipe.ui.theme

ModernSpinnerUI() - Constructor for class org.hkijena.jipipe.ui.theme.ModernSpinnerUI

ModifiedEvent(JIPipeProjectCache) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent

Creates a new event

ModifiedFlowLayout - Class in org.hkijena.jipipe.ui.components

A modified version of FlowLayout that allows containers using this Layout to behave in a reasonable manner when placed inside a JScrollPane

ModifiedFlowLayout() - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifiedFlowLayout(int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifiedFlowLayout(int, int, int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

ModifyAndMergeTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

ModifyAndMergeTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

ModifyAndMergeTablesScript(ModifyAndMergeTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

Copies the algorithm

ModifyAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

ModifyAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

ModifyAnnotationScript(ModifyAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

Copies the algorithm

ModifyTableColumnNamesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

ModifyTableColumnNamesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

ModifyTableColumnNamesAlgorithm(ModifyTableColumnNamesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

ModifyTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

ModifyTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

ModifyTablesScript(ModifyTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

Copies the algorithm

MonochromeColorIcon - Class in org.hkijena.jipipe.ui.components

Icon that takes an existing image icon and uses it as mask for recoloring

MonochromeColorIcon(ImageIcon) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon

Creates a white icon

MonochromeColorIcon(ImageIcon, Color) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon

MontageToStackAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Implementation of MontageMaker

MontageToStackAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

MontageToStackAlgorithm(MontageToStackAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

months - Static variable in class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel

Morphology2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

Morphology2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

Instantiates a new node type.

Morphology2DAlgorithm(Morphology2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyBinary2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm(MorphologyBinary2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

Instantiates a new node type.

MorphologyBinary2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Available transformation functions

MorphologyFillHoles2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyFillHoles2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

Instantiates a new node type.

MorphologyFillHoles2DAlgorithm(MorphologyFillHoles2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

Instantiates a new node type.

MorphologyInternalGradient2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyInternalGradient2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

Instantiates a new node type.

MorphologyInternalGradient2DAlgorithm(MorphologyInternalGradient2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

Instantiates a new node type.

MorphologyOutline2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologyOutline2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

Instantiates a new node type.

MorphologyOutline2DAlgorithm(MorphologyOutline2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

Instantiates a new node type.

MorphologySkeletonize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

Wrapper around ImageProcessor

MorphologySkeletonize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

Instantiates a new node type.

MorphologySkeletonize2DAlgorithm(MorphologySkeletonize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

Instantiates a new node type.

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

mouseWheelMoved(MouseWheelEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

moveAllCacheToNonVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

moveAllCacheToVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

moveCacheToNonVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

moveCacheToVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl

moveDown(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Moves the specified slot down in its order

moveDown(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

MoveNodesGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

MoveNodesGraphHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

Creates a snapshot of all node locations

moveSeriesDown(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Moves the series down in order

moveSeriesUp(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Moves the series up in order

moveToGridLocation(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the node to a grid location

moveToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

moveToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

moveToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

moveToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

moveToNextGridPoint(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the node to the next grid location, given a real location

moveToStoredGridLocation(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Moves the UI back to the stored grid location

moveUp(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Moves the specified slot up in its order

moveUp(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

MSTGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout

MST-based auto-layout method

MSTGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod

MSTGraphAutoLayoutMethod.Edge - Class in org.hkijena.jipipe.ui.grapheditor.layout

MSTGraphAutoLayoutMethod.Node - Class in org.hkijena.jipipe.ui.grapheditor.layout

MultiDataSlotTableColumnRenderer(JIPipeMergedDataSlotTable) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer

Creates a new instance

MultiFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater

Opened when selecting one file

MultiFileSelectionPanel(JIPipeWorkbench, ManagerUI, Set<FileObject>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MultiFileSelectionPanel

MultiParameterAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

An algorithm that takes multi parameters

MultiParameterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

Creates a new instance

MultiParameterAlgorithm(MultiParameterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

Copies the algorithm

MultiParameterAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.multiparameters

Extension that provides capabilities to run multiple parameters

MultiParameterAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

MultiParameterAlgorithmSlotConfiguration - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

Slot configuration for MultiParameterAlgorithm

MultiParameterAlgorithmSlotConfiguration() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

Creates a new instance

MultiParameterNodeInfo - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms

Info for MultiParameterAlgorithm

MultiParameterNodeInfo() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

Creates a new instance

MultiParametersExtension - Class in org.hkijena.jipipe.extensions.multiparameters

Extension that provides capabilities to run multiple parameters

MultiParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

MultiSelectionModel - Class in org.hkijena.jipipe.ui.components

Selection model for multiple selections

MultiSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.MultiSelectionModel

MultiTemplateMatchingAlgorithm - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching

MultiTemplateMatchingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

MultiTemplateMatchingAlgorithm(MultiTemplateMatchingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

MultiTemplateMatchingExtension - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching

Extension that adds ImageJ2 algorithms

MultiTemplateMatchingExtension() - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

MutableTableColumn - Interface in org.hkijena.jipipe.extensions.tables

A TableColumn that carries data and is therefore mutable

N

name() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation

NamedAnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

NamedAnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression

NamedAnnotationGeneratorExpression(PairParameter<AnnotationGeneratorExpression, String>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression

NamedAnnotationGeneratorExpression.List - Class in org.hkijena.jipipe.extensions.parameters.expressions

NamedStringQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

NamedStringQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression

NamedStringQueryExpression(PairParameter<String, StringQueryExpression>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression

NamedStringQueryExpression.List - Class in org.hkijena.jipipe.extensions.parameters.expressions

nameEquals(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the names are equal

nameEquals(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if the name equals the string

nameEquals(JIPipeAnnotation, JIPipeAnnotation) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Returns true if both have the same name.

NaturalOrderComparator - Class in org.hkijena.jipipe.utils

NaturalOrderComparator() - Constructor for class org.hkijena.jipipe.utils.NaturalOrderComparator

NavigationRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer

Creates a new instance

Neighborhood2D - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1

newInstance(Object...) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

Creates a new instance

newInstance() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo

newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo

newInstance() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo

Creates a new node type instance

newInstance() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo

newInstance() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo

Creates a new non-null instance of the parameter type

newInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

newInstance(Class<?>, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils

Creates a new class instance.

NewPlotMenuExtension - Class in org.hkijena.jipipe.extensions.plots

Adds an entry "New plot" to the JIPipe menu

NewPlotMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension

Creates a new instance

newProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Creates a new project and asks the user if it should be opened in this or a new window

newProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project.

newProjectFromTemplate() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new project from template

NewTableMenuExtension - Class in org.hkijena.jipipe.extensions.tables

Adds an entry "New table" to the JIPipe menu

NewTableMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension

Creates a new instance

newTest() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

Creates a new test

newText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

newText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

newWindow(Context, JIPipeJsonExtension, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Opens a new window

newWindow(Context, JIPipeProject, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Creates a new window

NO_EMPTY_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Flag for ParameterPanel.

NO_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Flag for ParameterPanel.

Node(JIPipeParameterTree.Node, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

Creates a node

Node(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

NodeConnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent

NodeContextActionWrapperUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

NodeContextActionWrapperUIContextAction(JIPipeNodeInfo, String, String, Icon, Method) - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

NodeDisconnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent

NodeGroup - Class in org.hkijena.jipipe.api.grouping

A sub-graph algorithm that can be defined by a user

NodeGroup(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Creates a new instance

NodeGroup(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Creates a copy

NodeGroup(JIPipeGraph, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup

Initializes from an existing graph

NodeGroupContents - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContents() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

Creates a new empty instance

NodeGroupContents(NodeGroupContents) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

Makes a copy

NodeGroupContents.Deserializer - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContents.Serializer - Class in org.hkijena.jipipe.api.grouping.parameters

NodeGroupContentsParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters

Editor for NodeGroupContents

NodeGroupContentsParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

Creates new instance

NodeInfoRegisteredEvent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.JIPipe.NodeInfoRegisteredEvent

NodeSelectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent

NodeSlotsChangedEvent(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeSlotsChangedEvent

NodeToolBoxMenuExtension - Class in org.hkijena.jipipe.extensions.nodetoolboxtool

NodeToolBoxMenuExtension(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxMenuExtension

NodeToolBoxToolExtension - Class in org.hkijena.jipipe.extensions.nodetoolboxtool

NodeToolBoxToolExtension() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

NodeToolBoxTransferHandler - Class in org.hkijena.jipipe.extensions.nodetoolboxtool

NodeToolBoxTransferHandler() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler

NodeToolBoxWindow - Class in org.hkijena.jipipe.extensions.nodetoolboxtool

NodeToolBoxWindow() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxWindow

NodeUIContextAction - Interface in org.hkijena.jipipe.ui.grapheditor.contextmenu

An action that is applied one or multiple algorithms

NonCollidingRectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections

Encapsulates drawing rectangular lines

NonCollidingRectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

NONE - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

No flags

NONE - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Flag that indicates no modifications, meaning (1) No documentation, and (2) no scrolling

NONE - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates no modifications, meaning (1) No documentation, and (2) no scrolling

normal - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

normalize(List<TableColumn>, int) - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization

Generates columns that have the same number of true rows

normalize(List<TableColumn>) - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization

Generates columns that have the same number of true rows

normalizeTabRuns(int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout

nullToEmpty(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Returns an empty string if s is null otherwise returns s

nullToEmpty(Object) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns an empty string if s is null otherwise returns s

NumberParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for a any numeric parameter

NumberParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

NumberParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Attached to the getter or setter of Number parameter to setup the GUI

NumberRangeParameterGenerator<T extends Number & Comparable<T>> - Class in org.hkijena.jipipe.extensions.parameters.generators

Generator that creates instances of Number.

NumberRangeParameterGenerator(JIPipeWorkbench, Class<? extends Number>) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

Creates a new instance

NumericDivideFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericDivideFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator

NumericEulerConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants

NumericEulerConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericEulerConstant

NumericExponentFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericExponentFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator

NumericFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericFunctionOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator

NumericGreaterThanOrEqualPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericGreaterThanOrEqualPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator

NumericGreaterThanPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericGreaterThanPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator

NumericLessThanOrEqualPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericLessThanOrEqualPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator

NumericLessThanPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericLessThanPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator

NumericModuloFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericModuloFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator

NumericMultiplyFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericMultiplyFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator

NumericOrStringFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericOrStringFunctionOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator

NumericPiConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants

NumericPiConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericPiConstant

NumericPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

NumericPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator

NumericTauConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants

NumericTauConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericTauConstant

O

OccurrencesColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Converts each entry into a the number of occurrences within the column

OccurrencesColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation

OCEAN_BLACK - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

OCEAN_BLACK - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

OCEAN_BLACK - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

OCEAN_DROP - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

OCEAN_DROP - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

OCEAN_DROP - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

ok - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

OMEColorMode - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

Wrapper around Bioformats color modes

OMEExport(OMEImageData, Path, OMEExporterSettings) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Copy of the run method in Exporter that allows configuration via a parameter object

OMEExporterSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

OMEExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

OMEExporterSettings(OMEExporterSettings) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

OMEImageData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

Data that is a representation of all information saved in Bio-Formats

OMEImageData(ImagePlus, ROIListData, OMEXMLMetadata) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

OMEImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ImagePlus and OMEImageData

OMEImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter

OMEImageDataImportIntoImageJOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageDataImportIntoImageJOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

OMEImageDataImportIntoJIPipeOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageDataImportIntoJIPipeOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

OMEImageDataImportViaBioFormatsOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageDataImportViaBioFormatsOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

OMEImageDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataPreview

Creates a new renderer

OMEImageResultImportRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

OMEImageResultImportRun(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

OMEImageToImagePlusTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OMEImageToImagePlusTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter

OmeImageToOMEXMLTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OmeImageToOMEXMLTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter

OMEImageToROITypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

OMEImageToROITypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter

OMEROCredentials - Class in org.hkijena.jipipe.extensions.omero

OMEROCredentials() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROCredentials

OMEROCredentials(OMEROCredentials) - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROCredentials

OMERODatasetReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes

OMERODatasetReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

OMERODatasetReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources

OMERODatasetReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource

OMERODatasetReferenceDataSource(OMERODatasetReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource

OMEROExtension - Class in org.hkijena.jipipe.extensions.omero

Provides data types dor handling strings

OMEROExtension() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROExtension

OMEROFindDatasetAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources

OMEROFindDatasetAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

OMEROFindDatasetAlgorithm(OMEROFindDatasetAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

OMEROFindImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources

OMEROFindImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

OMEROFindImageAlgorithm(OMEROFindImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

OMEROFindProjectAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources

OMEROFindProjectAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

OMEROFindProjectAlgorithm(OMEROFindProjectAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

OMEROImageReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes

OMEROImageReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

OMEROImageReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources

OMEROImageReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource

OMEROImageReferenceDataSource(OMEROImageReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource

OMEROProjectReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes

Data that stores a reference to an OMERO project

OMEROProjectReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

OMEROProjectReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources

OMEROProjectReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource

OMEROProjectReferenceDataSource(OMEROProjectReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource

OMEROSettings - Class in org.hkijena.jipipe.extensions.omero

OMEROSettings() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROSettings

OMEROToJIPipeLogger - Class in org.hkijena.jipipe.extensions.omero.util

OMEROToJIPipeLogger(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

OMEROUploadToJIPipeLogger - Class in org.hkijena.jipipe.extensions.omero.util

OMEROUploadToJIPipeLogger(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROUploadToJIPipeLogger

OMEROUtils - Class in org.hkijena.jipipe.extensions.omero.util

OMEROUtils() - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

OMETIFFCompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters

Available compression methods

onActionRequested(JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Triggers when an JIPipeNodeUI requests an action.

onAlgorithmActionRequested(JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

Listens to events of algorithms requesting some action

onAlgorithmConnected(JIPipeGraph.NodeConnectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when a connection is made

onAlgorithmEvent(JIPipeNodeUI.AlgorithmEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Triggered when something interesting happens in the graph and the UI should scroll to it

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Should trigger when a successful connection was made.

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI

Should trigger when a target slot was successfully found.

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Should trigger when a successful connection was made.

onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI

Should trigger when a target slot was successfully found.

onAlgorithmGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Should be triggered when the slots are changed

onAlgorithmGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when the algorithm graph is changed.

onAlgorithmParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Should be triggered when an algorithm's name parameter is changed

onAlgorithmRegistryChanged(JIPipe.NodeInfoRegisteredEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when new algorithms are registered.

onAlgorithmRemoved(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Listens to changes in the algorithm graph.

onAlgorithmSelected(JIPipeNodeInfoPicker.NodeSelectedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

Triggered when a trait is selected

onAlgorithmSelected(JIPipeGraphCanvasUI.AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when an algorithm was selected

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Triggered when the algorithm's slots are changed

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Should be triggered when an JIPipeGraphNode's slots are changed.

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

Triggered when algorithm slots are changed

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Should trigger when the target algorithm slots are changed

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Should trigger when the target algorithm slots are changed

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Should be triggered when the algorithm's slots are changed.

onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Triggered when the algorithm slots are changed

onApplicationSettingsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu

Triggered when the list should be changed

onApplicationSettingsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentProjectsMenu

Triggered when the list should be changed

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI

Triggered when the cache was updated

onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI

Triggered when the cache was updated

onCompartmentGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProject

Triggered when the compartment graph is changed

onCompartmentRemoved(JIPipeProject.CompartmentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Triggered when a compartment is deleted.

onContentAddedEvent(JIPipe.ExtensionContentAddedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when content was added

onContentRemovedEvent(JIPipe.ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when content was removed

onContentRemovedEvent(JIPipe.ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Triggered when content was removed

onDatatypeRegistered(JIPipe.DatatypeRegisteredEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Triggered when a datatype was registered.

onDefaultActionRequested(JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

onDisconnected(JIPipeGraph.NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when an algorithm input is disconnected

onExtensionDiscovered(JIPipe.ExtensionDiscoveredEvent) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Triggered when an extension is registered.

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

Triggered when an extension is registered

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Triggered when an extension is registered.

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel

Triggered when a new extension is registered

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Informs the user about registered extensions.

onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Informs the user about registered extensions.

onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

onGraphCanvasUpdated(JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Triggered when the wrapped graph changed

onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Should be triggered when the algorithm graph is changed

onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onGraphParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

Triggered when the parameter structure of an algorithm is changed Updates the list of available parameters

onGraphStructureChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the algorithm graph was changed

onInstallerSuccessful(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow

onInstallerUnsuccessful(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow

onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

onNavigatorNavigate(SearchBox.SelectedEvent<Object>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Triggered when the user selected something in the navigator

onNodeSlotsChanged(JIPipeSlotConfiguration.SlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onOpenAlgorithmSettings(JIPipeGraphCanvasUI.AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Should be triggered when an JIPipeNodeUI requests that the algorithm settings should be opened

onOpenCompartment(JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

Should be triggered when a user double-clicks a graph node to open it in the graph editor

onOperationFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

onOperationInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Triggered when a name was changed

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Listens for changes in parameters

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

Triggered when a plot builder parameter is changed

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Triggered when a parameter was changed

onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onParameterChangedEvent(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Triggered when a parameter value was changed.

onParameterReferenceChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the references were changed

onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

onParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Triggered when the plot builder's parameters are changed

onParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Triggered when the plot builder's parameters are changed

onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI

Triggered when the parameter structure was changed

onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Should be triggered when an JIPipeGraphNode's parameter structure is changed.

onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Triggered when the parameter structure of this algorithm was changed

onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Triggered when a source informs that the parameter structure was changed.

onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Triggered when the parameter structure was changed

onPixelHover(ImageViewerPanelCanvas.PixelHoverEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeInfoUI

onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI

onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectInfoUI

onReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Triggered when some parameters were changed down the line

onRunCancelled(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer

onRunCancelled(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

Triggered when the run is finished

onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onRunInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI

Triggered when the run is interrupted

onRunStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

onSelectionChanged(JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

onSettingChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Triggered when a setting was changed

onSettingChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.PreviewControlUI

onSlotConfigurationChanged(JIPipeSlotConfiguration.SlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Should be triggered when a slot is added to the slot configuration

onSlotConfigurationParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Triggered when a parameter is changed within the slot configuration.

onSlotConnected(JIPipeGraph.NodeConnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Called by an JIPipeGraph when a slot was connected.

onSlotDisconnected(JIPipeGraph.NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Called by the JIPipeGraph to trigger slot inheritance updates when a slot is disconnected

onSlotNameChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Triggered when the custom name of the slot definition is changed

onSlotNameChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Triggered when the custom name of the slot definition is changed

onSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI

Triggered when the slots were changed

onSlotsUpdated(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Triggered when algorithm slots are changed

onSourceParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

onStatus(JIPipeProgressInfo.StatusUpdatedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

onTableStructureChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

onTraitSelected(JIPipeDataTypePicker.SelectedDataTypesChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

Triggered when a trait is selected

onWindowClosed(WindowClosedEvent) - Method in class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

Triggered when a scheduled worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a scheduled worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

Triggered when a scheduled worker is finished

onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

Triggered when the quick run finished calculating

onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

Triggered when a schedules worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a schedules worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is interrupted

onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

Triggered when a schedules worker is interrupted

onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI

Triggered when the quick run finished calculating

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker reports progress

onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

Triggered when a worker reports progress

onWorkerStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Triggered when a worker is started

onWorkerStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

onZoomChanged(ZoomViewPort.ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

onZoomChanged(ZoomViewPort.ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

OpenCacheBrowserInWindowUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

OpenCacheBrowserInWindowUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

OpenCLKernelScript - Class in org.hkijena.jipipe.extensions.clij2.parameters

A OpenCL kernel script

OpenCLKernelScript() - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

Creates a new instance

OpenCLKernelScript(OpenCLKernelScript) - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript

Makes a copy

openCompartmentGraph(JIPipeProjectCompartment, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Opens the graph editor for specified compartment

OpenContainingFolderDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data

Import operation that opens the containing folder.

OpenContainingFolderDataImportOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

openContextMenu(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Opens the context menu at the location.

openDirectories(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple directories

openDirectories(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose multiple directories

openDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a directory

openDirectory(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a directory

openErrorDialog(Component, Exception) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a dialog showing an exception

openFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file

openFile(Component, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a file

openFileInNative(Path) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Opens a website with given URL

openFileInNative(Path) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a website with given URL

openFiles(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple files

openFiles(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose multiple files

openGroupNodeGraph(JIPipeWorkbench, NodeGroup, boolean) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI

Opens the graph editor for specified compartment

OpenImageJTool - Class in org.hkijena.jipipe.extensions.tools

OpenImageJTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.OpenImageJTool

Creates a new instance

OpenInImageJDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display

OpenInImageJDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay

OpenInNativeApplicationDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data

OpenInNativeApplicationDataImportOperation(String, String, String[]) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

OpenInNativeApplicationDataImportOperation(String...) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

openInNewTab(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

openNewToolBox() - Static method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxWindow

openPath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file or directory

openPath(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a file or directory

OpenPathDataOperation - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis

OpenPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

openPaths(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose multiple files or directories

openPaths(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose multiple files or directories

OpenPlotInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis

OpenPlotInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Opens a project from a file Asks the user if it should be opened in this or a new window

openProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Displays a file chooser where the user can open a project.

openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a project from a file or folder Asks the user if it should replace the currently displayed project

openProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a file chooser where the user can select a project file

openProjectAndOutput() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Opens a file chooser where the user can select a result folder

openRestoreMenu(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

OpenResultsTableInImageJDataOperation - Class in org.hkijena.jipipe.extensions.tables.display

OpenResultsTableInImageJDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

OpenResultsTableInJIPipeTabDataOperation - Class in org.hkijena.jipipe.extensions.tables.display

OpenResultsTableInJIPipeTabDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

openROIs(IMetadata, ImagePlus[]) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.

openROIs(IMetadata, ImagePlus[], boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Opens the rois and converts them into ImageJ Rois.

OpenTextInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.core.data

OpenTextInJIPipeDataOperation(String...) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

openValidityReportDialog(Component, JIPipeValidityReport, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a dialog showing a validity report

openWebsite(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Opens a website with given URL

openWebsite(String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Opens a website with given URL

OPERATOR_AND_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_AND_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_ELEMENT_ACCESS_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_ELEMENT_ACCESS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NEGATE_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NEGATE_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_DIVIDE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_EQUALS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_EQUALS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_EXPONENT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_GREATER_THAN - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_GREATER_THAN_OR_EQUAL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_LESS_THAN - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_LESS_THAN_OR_EQUAL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_MINUS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_MODULO - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_MULTIPLY - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_NEGATE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_NEGATE_HIGH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_STRING_PLUS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_UNEQUALS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_NUMERIC_UNEQUALS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_OR_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_OR_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_STRING_CONTAINS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_STRING_CONTAINS2 - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_VARIABLE_EXISTS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_VARIABLE_RESOLVE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OPERATOR_XOR_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

OperatorSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions

Panel that allows the user to select an ExpressionOperator

OperatorSelectorList(ExpressionEvaluator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList

OperatorSelectorList.ExpressionOperatorRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions

OptionalAnnotationNameParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter used for creating annotations

OptionalAnnotationNameParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

OptionalAnnotationNameParameter(OptionalStringParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

OptionalAnnotationNameParameter(String, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

OptionalBooleanParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Boolean

OptionalBooleanParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

Creates a new instance

OptionalBooleanParameter(OptionalBooleanParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

Creates a copy

OptionalByteParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Byte

OptionalByteParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

Creates a new instance

OptionalByteParameter(OptionalByteParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

Creates a copy

OptionalColorMapParameter - Class in org.hkijena.jipipe.extensions.parameters.colors

Optional ColorMap

OptionalColorMapParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

Creates a new instance

OptionalColorMapParameter(OptionalColorMapParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

Creates a copy

OptionalColorParameter - Class in org.hkijena.jipipe.extensions.parameters.colors

Optional Color

OptionalColorParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

Creates a new instance

OptionalColorParameter(Color, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

OptionalColorParameter(OptionalColorParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

Creates a copy

OptionalDataInfoRefParameter - Class in org.hkijena.jipipe.extensions.parameters.references

OptionalDataInfoRefParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalDataInfoRefParameter

OptionalDataInfoRefParameter(OptionalDataInfoRefParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalDataInfoRefParameter

OptionalDoubleParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Double

OptionalDoubleParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

Creates a new instance

OptionalDoubleParameter(OptionalDoubleParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

Creates a copy

OptionalFloatParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Float

OptionalFloatParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

Creates a new instance

OptionalFloatParameter(OptionalFloatParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

Creates a copy

OptionalIntegerParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Integer

OptionalIntegerParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

Creates a new instance

OptionalIntegerParameter(OptionalIntegerParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

Creates a copy

OptionalIntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi

An optional IntModificationParameter

OptionalIntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter

OptionalIntModificationParameter(OptionalIntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter

OptionalLongParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Long

OptionalLongParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

Creates a new instance

OptionalLongParameter(OptionalLongParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

Creates a copy

OptionalNodeInfoRefParameter - Class in org.hkijena.jipipe.extensions.parameters.references

OptionalNodeInfoRefParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalNodeInfoRefParameter

OptionalNodeInfoRefParameter(OptionalNodeInfoRefParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalNodeInfoRefParameter

OptionalParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

A parameter that is optional

OptionalParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

OptionalParameter(OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

Produces a shallow copy You have to implement deep content copying yourself

OptionalParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

Deserializes the parameter

OptionalParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.optional

Serializes the parameter

OptionalParameterContentAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.optional

Parameter access for the key entry in PairParameter

OptionalParameterContentAccess(JIPipeParameterAccess, OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

Creates a new instance

OptionalParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.optional

Generic parameter for OptionalParameter

OptionalParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

Creates new instance

OptionalPathParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Path

OptionalPathParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

Creates a new instance

OptionalPathParameter(OptionalPathParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

Creates a copy

OptionalShortParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional Short

OptionalShortParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

Creates a new instance

OptionalShortParameter(OptionalShortParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

Creates a copy

OptionalStringParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

Optional String

OptionalStringParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

Creates a new instance

OptionalStringParameter(OptionalStringParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

Creates a copy

OptionalStringParameter(String, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

OPTIONS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

OPTIONS - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader

orElse(String, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Returns the string if its not null or empty or the alternative

orElse(String, String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Returns the string if its not null or empty or the alternative

org.hkijena.ijupdatercli - package org.hkijena.ijupdatercli

org.hkijena.jipipe - package org.hkijena.jipipe

org.hkijena.jipipe.api - package org.hkijena.jipipe.api

org.hkijena.jipipe.api.compartments - package org.hkijena.jipipe.api.compartments

org.hkijena.jipipe.api.compartments.algorithms - package org.hkijena.jipipe.api.compartments.algorithms

org.hkijena.jipipe.api.compartments.datatypes - package org.hkijena.jipipe.api.compartments.datatypes

org.hkijena.jipipe.api.compat - package org.hkijena.jipipe.api.compat

org.hkijena.jipipe.api.data - package org.hkijena.jipipe.api.data

org.hkijena.jipipe.api.exceptions - package org.hkijena.jipipe.api.exceptions

org.hkijena.jipipe.api.grouping - package org.hkijena.jipipe.api.grouping

org.hkijena.jipipe.api.grouping.events - package org.hkijena.jipipe.api.grouping.events

org.hkijena.jipipe.api.grouping.parameters - package org.hkijena.jipipe.api.grouping.parameters

org.hkijena.jipipe.api.history - package org.hkijena.jipipe.api.history

org.hkijena.jipipe.api.nodes - package org.hkijena.jipipe.api.nodes

org.hkijena.jipipe.api.nodes.categories - package org.hkijena.jipipe.api.nodes.categories

org.hkijena.jipipe.api.parameters - package org.hkijena.jipipe.api.parameters

org.hkijena.jipipe.api.registries - package org.hkijena.jipipe.api.registries

org.hkijena.jipipe.api.testbench - package org.hkijena.jipipe.api.testbench

org.hkijena.jipipe.extensions - package org.hkijena.jipipe.extensions

org.hkijena.jipipe.extensions.annotation - package org.hkijena.jipipe.extensions.annotation

org.hkijena.jipipe.extensions.annotation.algorithms - package org.hkijena.jipipe.extensions.annotation.algorithms

org.hkijena.jipipe.extensions.annotation.datasources - package org.hkijena.jipipe.extensions.annotation.datasources

org.hkijena.jipipe.extensions.clij2 - package org.hkijena.jipipe.extensions.clij2

org.hkijena.jipipe.extensions.clij2.algorithms - package org.hkijena.jipipe.extensions.clij2.algorithms

org.hkijena.jipipe.extensions.clij2.datatypes - package org.hkijena.jipipe.extensions.clij2.datatypes

org.hkijena.jipipe.extensions.clij2.parameters - package org.hkijena.jipipe.extensions.clij2.parameters

org.hkijena.jipipe.extensions.clij2.ui - package org.hkijena.jipipe.extensions.clij2.ui

org.hkijena.jipipe.extensions.core - package org.hkijena.jipipe.extensions.core

org.hkijena.jipipe.extensions.core.data - package org.hkijena.jipipe.extensions.core.data

org.hkijena.jipipe.extensions.filesystem - package org.hkijena.jipipe.extensions.filesystem

org.hkijena.jipipe.extensions.filesystem.algorithms - package org.hkijena.jipipe.extensions.filesystem.algorithms

org.hkijena.jipipe.extensions.filesystem.compat - package org.hkijena.jipipe.extensions.filesystem.compat

org.hkijena.jipipe.extensions.filesystem.datasources - package org.hkijena.jipipe.extensions.filesystem.datasources

org.hkijena.jipipe.extensions.filesystem.dataypes - package org.hkijena.jipipe.extensions.filesystem.dataypes

org.hkijena.jipipe.extensions.filesystem.resultanalysis - package org.hkijena.jipipe.extensions.filesystem.resultanalysis

org.hkijena.jipipe.extensions.ijmultitemplatematching - package org.hkijena.jipipe.extensions.ijmultitemplatematching

org.hkijena.jipipe.extensions.imagejalgorithms - package org.hkijena.jipipe.extensions.imagejalgorithms

org.hkijena.jipipe.extensions.imagejalgorithms.ij1 - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

org.hkijena.jipipe.extensions.imagejalgorithms.utils - package org.hkijena.jipipe.extensions.imagejalgorithms.utils

org.hkijena.jipipe.extensions.imagejdatatypes - package org.hkijena.jipipe.extensions.imagejdatatypes

org.hkijena.jipipe.extensions.imagejdatatypes.algorithms - package org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

org.hkijena.jipipe.extensions.imagejdatatypes.compat - package org.hkijena.jipipe.extensions.imagejdatatypes.compat

org.hkijena.jipipe.extensions.imagejdatatypes.datasources - package org.hkijena.jipipe.extensions.imagejdatatypes.datasources

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft

org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale

org.hkijena.jipipe.extensions.imagejdatatypes.display - package org.hkijena.jipipe.extensions.imagejdatatypes.display

org.hkijena.jipipe.extensions.imagejdatatypes.parameters - package org.hkijena.jipipe.extensions.imagejdatatypes.parameters

org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis - package org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

org.hkijena.jipipe.extensions.imagejdatatypes.util - package org.hkijena.jipipe.extensions.imagejdatatypes.util

org.hkijena.jipipe.extensions.imagejdatatypes.util.measure - package org.hkijena.jipipe.extensions.imagejdatatypes.util.measure

org.hkijena.jipipe.extensions.imagejdatatypes.viewer - package org.hkijena.jipipe.extensions.imagejdatatypes.viewer

org.hkijena.jipipe.extensions.jsonextensionloader - package org.hkijena.jipipe.extensions.jsonextensionloader

org.hkijena.jipipe.extensions.multiparameters - package org.hkijena.jipipe.extensions.multiparameters

org.hkijena.jipipe.extensions.multiparameters.algorithms - package org.hkijena.jipipe.extensions.multiparameters.algorithms

org.hkijena.jipipe.extensions.multiparameters.datasources - package org.hkijena.jipipe.extensions.multiparameters.datasources

org.hkijena.jipipe.extensions.multiparameters.datatypes - package org.hkijena.jipipe.extensions.multiparameters.datatypes

org.hkijena.jipipe.extensions.nodetoolboxtool - package org.hkijena.jipipe.extensions.nodetoolboxtool

org.hkijena.jipipe.extensions.omero - package org.hkijena.jipipe.extensions.omero

org.hkijena.jipipe.extensions.omero.algorithms - package org.hkijena.jipipe.extensions.omero.algorithms

org.hkijena.jipipe.extensions.omero.datasources - package org.hkijena.jipipe.extensions.omero.datasources

org.hkijena.jipipe.extensions.omero.datatypes - package org.hkijena.jipipe.extensions.omero.datatypes

org.hkijena.jipipe.extensions.omero.util - package org.hkijena.jipipe.extensions.omero.util

org.hkijena.jipipe.extensions.parameters - package org.hkijena.jipipe.extensions.parameters

org.hkijena.jipipe.extensions.parameters.collections - package org.hkijena.jipipe.extensions.parameters.collections

org.hkijena.jipipe.extensions.parameters.colors - package org.hkijena.jipipe.extensions.parameters.colors

org.hkijena.jipipe.extensions.parameters.editors - package org.hkijena.jipipe.extensions.parameters.editors

org.hkijena.jipipe.extensions.parameters.enums - package org.hkijena.jipipe.extensions.parameters.enums

org.hkijena.jipipe.extensions.parameters.expressions - package org.hkijena.jipipe.extensions.parameters.expressions

org.hkijena.jipipe.extensions.parameters.expressions.constants - package org.hkijena.jipipe.extensions.parameters.expressions.constants

org.hkijena.jipipe.extensions.parameters.expressions.functions - package org.hkijena.jipipe.extensions.parameters.expressions.functions

org.hkijena.jipipe.extensions.parameters.expressions.operators - package org.hkijena.jipipe.extensions.parameters.expressions.operators

org.hkijena.jipipe.extensions.parameters.expressions.variables - package org.hkijena.jipipe.extensions.parameters.expressions.variables

org.hkijena.jipipe.extensions.parameters.functions - package org.hkijena.jipipe.extensions.parameters.functions

org.hkijena.jipipe.extensions.parameters.generators - package org.hkijena.jipipe.extensions.parameters.generators

org.hkijena.jipipe.extensions.parameters.matrix - package org.hkijena.jipipe.extensions.parameters.matrix

org.hkijena.jipipe.extensions.parameters.optional - package org.hkijena.jipipe.extensions.parameters.optional

org.hkijena.jipipe.extensions.parameters.pairs - package org.hkijena.jipipe.extensions.parameters.pairs

org.hkijena.jipipe.extensions.parameters.patterns - package org.hkijena.jipipe.extensions.parameters.patterns

org.hkijena.jipipe.extensions.parameters.primitives - package org.hkijena.jipipe.extensions.parameters.primitives

org.hkijena.jipipe.extensions.parameters.references - package org.hkijena.jipipe.extensions.parameters.references

org.hkijena.jipipe.extensions.parameters.roi - package org.hkijena.jipipe.extensions.parameters.roi

org.hkijena.jipipe.extensions.parameters.scripts - package org.hkijena.jipipe.extensions.parameters.scripts

org.hkijena.jipipe.extensions.parameters.table - package org.hkijena.jipipe.extensions.parameters.table

org.hkijena.jipipe.extensions.parameters.util - package org.hkijena.jipipe.extensions.parameters.util

org.hkijena.jipipe.extensions.plots - package org.hkijena.jipipe.extensions.plots

org.hkijena.jipipe.extensions.plots.converters - package org.hkijena.jipipe.extensions.plots.converters

org.hkijena.jipipe.extensions.plots.datatypes - package org.hkijena.jipipe.extensions.plots.datatypes

org.hkijena.jipipe.extensions.plots.parameters - package org.hkijena.jipipe.extensions.plots.parameters

org.hkijena.jipipe.extensions.plots.ui.resultanalysis - package org.hkijena.jipipe.extensions.plots.ui.resultanalysis

org.hkijena.jipipe.extensions.plots.utils - package org.hkijena.jipipe.extensions.plots.utils

org.hkijena.jipipe.extensions.python - package org.hkijena.jipipe.extensions.python

org.hkijena.jipipe.extensions.settings - package org.hkijena.jipipe.extensions.settings

org.hkijena.jipipe.extensions.strings - package org.hkijena.jipipe.extensions.strings

org.hkijena.jipipe.extensions.strings.datasources - package org.hkijena.jipipe.extensions.strings.datasources

org.hkijena.jipipe.extensions.tables - package org.hkijena.jipipe.extensions.tables

org.hkijena.jipipe.extensions.tables.algorithms - package org.hkijena.jipipe.extensions.tables.algorithms

org.hkijena.jipipe.extensions.tables.datatypes - package org.hkijena.jipipe.extensions.tables.datatypes

org.hkijena.jipipe.extensions.tables.display - package org.hkijena.jipipe.extensions.tables.display

org.hkijena.jipipe.extensions.tables.operations.converting - package org.hkijena.jipipe.extensions.tables.operations.converting

org.hkijena.jipipe.extensions.tables.operations.integrating - package org.hkijena.jipipe.extensions.tables.operations.integrating

org.hkijena.jipipe.extensions.tables.parameters - package org.hkijena.jipipe.extensions.tables.parameters

org.hkijena.jipipe.extensions.tables.parameters.collections - package org.hkijena.jipipe.extensions.tables.parameters.collections

org.hkijena.jipipe.extensions.tables.parameters.enums - package org.hkijena.jipipe.extensions.tables.parameters.enums

org.hkijena.jipipe.extensions.tables.parameters.processors - package org.hkijena.jipipe.extensions.tables.parameters.processors

org.hkijena.jipipe.extensions.tools - package org.hkijena.jipipe.extensions.tools

org.hkijena.jipipe.extensions.utils - package org.hkijena.jipipe.extensions.utils

org.hkijena.jipipe.extensions.utils.algorithms - package org.hkijena.jipipe.extensions.utils.algorithms

org.hkijena.jipipe.extensions.utils.datatypes - package org.hkijena.jipipe.extensions.utils.datatypes

org.hkijena.jipipe.extensions.utils.display - package org.hkijena.jipipe.extensions.utils.display

org.hkijena.jipipe.installer.linux - package org.hkijena.jipipe.installer.linux

org.hkijena.jipipe.installer.linux.api - package org.hkijena.jipipe.installer.linux.api

org.hkijena.jipipe.installer.linux.ui - package org.hkijena.jipipe.installer.linux.ui

org.hkijena.jipipe.installer.linux.ui.events - package org.hkijena.jipipe.installer.linux.ui.events

org.hkijena.jipipe.installer.linux.ui.utils - package org.hkijena.jipipe.installer.linux.ui.utils

org.hkijena.jipipe.ui - package org.hkijena.jipipe.ui

org.hkijena.jipipe.ui.batchassistant - package org.hkijena.jipipe.ui.batchassistant

org.hkijena.jipipe.ui.cache - package org.hkijena.jipipe.ui.cache

org.hkijena.jipipe.ui.compartments - package org.hkijena.jipipe.ui.compartments

org.hkijena.jipipe.ui.compat - package org.hkijena.jipipe.ui.compat

org.hkijena.jipipe.ui.compendium - package org.hkijena.jipipe.ui.compendium

org.hkijena.jipipe.ui.components - package org.hkijena.jipipe.ui.components

org.hkijena.jipipe.ui.data - package org.hkijena.jipipe.ui.data

org.hkijena.jipipe.ui.events - package org.hkijena.jipipe.ui.events

org.hkijena.jipipe.ui.extension - package org.hkijena.jipipe.ui.extension

org.hkijena.jipipe.ui.extensionbuilder - package org.hkijena.jipipe.ui.extensionbuilder

org.hkijena.jipipe.ui.extensions - package org.hkijena.jipipe.ui.extensions

org.hkijena.jipipe.ui.grapheditor - package org.hkijena.jipipe.ui.grapheditor

org.hkijena.jipipe.ui.grapheditor.algorithmfinder - package org.hkijena.jipipe.ui.grapheditor.algorithmfinder

org.hkijena.jipipe.ui.grapheditor.connections - package org.hkijena.jipipe.ui.grapheditor.connections

org.hkijena.jipipe.ui.grapheditor.contextmenu - package org.hkijena.jipipe.ui.grapheditor.contextmenu

org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard - package org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard

org.hkijena.jipipe.ui.grapheditor.layout - package org.hkijena.jipipe.ui.grapheditor.layout

org.hkijena.jipipe.ui.grapheditor.settings - package org.hkijena.jipipe.ui.grapheditor.settings

org.hkijena.jipipe.ui.grouping - package org.hkijena.jipipe.ui.grouping

org.hkijena.jipipe.ui.ijupdater - package org.hkijena.jipipe.ui.ijupdater

org.hkijena.jipipe.ui.parameters - package org.hkijena.jipipe.ui.parameters

org.hkijena.jipipe.ui.plotbuilder - package org.hkijena.jipipe.ui.plotbuilder

org.hkijena.jipipe.ui.project - package org.hkijena.jipipe.ui.project

org.hkijena.jipipe.ui.registries - package org.hkijena.jipipe.ui.registries

org.hkijena.jipipe.ui.resultanalysis - package org.hkijena.jipipe.ui.resultanalysis

org.hkijena.jipipe.ui.running - package org.hkijena.jipipe.ui.running

org.hkijena.jipipe.ui.settings - package org.hkijena.jipipe.ui.settings

org.hkijena.jipipe.ui.tableanalyzer - package org.hkijena.jipipe.ui.tableanalyzer

org.hkijena.jipipe.ui.testbench - package org.hkijena.jipipe.ui.testbench

org.hkijena.jipipe.ui.texteditor - package org.hkijena.jipipe.ui.texteditor

org.hkijena.jipipe.ui.theme - package org.hkijena.jipipe.ui.theme

org.hkijena.jipipe.utils - package org.hkijena.jipipe.utils

outline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Outlines all Roi in this list by the specified algorithm.

OutlineRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

OutlineRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

Instantiates a new node type.

OutlineRoiAlgorithm(OutlineRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

Instantiates a new node type.

OutputFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

OutputFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

OutputFolderDataSource(OutputFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

OutputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

OutputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection

Creates a new instance

P

padSelectedTab(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout

paint(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

paint(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap

paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

paint(Graphics, JComponent) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder

paintBottomTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

paintComponent(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

paintComponent(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

paintContentBorderBottomEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintContentBorderLeftEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintContentBorderRightEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintContentBorderTopEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintFocusIndicator(Graphics, int, Rectangle[], int, Rectangle, Rectangle, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintHighlightBelowTab() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon

paintIndex - Variable in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier

paintLeftTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintRightTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintTabBackground(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintTabBorder(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

paintTopTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

PairParameter<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter equivalent of Map.Entry

PairParameter(Class<K>, Class<V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

PairParameter(PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

Creates a copy.

PairParameter.Deserializer<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Deserializes the parameter

PairParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.pairs

Serializes the parameter

PairParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.pairs

Editor for PairParameter

PairParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

Creates new instance

PairParameterKeyAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter access for the key entry in PairParameter

PairParameterKeyAccess(JIPipeParameterAccess, PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

Creates a new instance

PairParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.pairs

Allows to control the behavior of PairParameter

PairParameterValueAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs

Parameter access for the key entry in PairParameter

PairParameterValueAccess(JIPipeParameterAccess, PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

Creates a new instance

panel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

PARAM_BOTTOM - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_HEIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_LEFT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_RIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_TOP - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

PARAM_WIDTH - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin

ParameterAddingEvent(JIPipeDynamicParameterCollection, JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent

ParameterChangedEvent(Object, String) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent

ParameterColumn() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a new instance.

ParameterColumn(ParameterTable.ParameterColumn) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a copy

ParameterColumn(String, String, Class<?>) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

Creates a new instance

ParameterInfo - Class in org.hkijena.jipipe.extensions.parameters.expressions

Information about the parameters

ParameterInfo(String, String, Class<?>...) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo

ParameterPanel - Class in org.hkijena.jipipe.ui.parameters

UI around a JIPipeParameterCollection

ParameterPanel(JIPipeWorkbench, JIPipeParameterCollection, MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.parameters.ParameterPanel

ParameterReferencesChangedEvent - Class in org.hkijena.jipipe.api.grouping.events

Triggered by GraphNodeParameters and related classes

ParameterReferencesChangedEvent() - Constructor for class org.hkijena.jipipe.api.grouping.events.ParameterReferencesChangedEvent

ParametersData - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes

Stores the parameters of an algorithm

ParametersData() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

ParametersData.Serializer - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes

Serializes ParametersData

ParametersDataDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Generates ParametersData objects

ParametersDataDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

Creates a new instance

ParametersDataDefinition(ParametersDataDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

Copies the algorithm

ParametersDataTableDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources

Generates ParametersData objects

ParametersDataTableDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

Creates a new instance

ParametersDataTableDefinition(ParametersDataTableDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

Creates a copy

ParameterSlotAlgorithmSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

ParameterSlotAlgorithmSettings(JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

ParameterSlotPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

ParameterSlotPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

Creates a new instance

ParameterSlotPythonScriptAlgorithm(ParameterSlotPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

Creates a copy

ParameterStructureChangedEvent(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEvent

ParameterTable - Class in org.hkijena.jipipe.extensions.parameters.table

Table of other parameters

ParameterTable() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a new table

ParameterTable(ParameterTable) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Creates a copy

ParameterTable.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.table

Deserializes a ParameterTable

ParameterTable.ParameterColumn - Class in org.hkijena.jipipe.extensions.parameters.table

Column in the parameter table

ParameterTable.Serializer - Class in org.hkijena.jipipe.extensions.parameters.table

Serializes a ParameterTable

ParameterTableCellAccess - Class in org.hkijena.jipipe.extensions.parameters.table

Implements the access to table cell

ParameterTableCellAccess(JIPipeParameterAccess, ParameterTable, int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

Creates a new instance

ParameterTableEditorUI - Class in org.hkijena.jipipe.extensions.parameters.table

UI for ParameterTable

ParameterTableEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

Creates new instance

ParameterTesterMenuExtension - Class in org.hkijena.jipipe.extensions.parameters

Adds an entry "New table" to the JIPipe menu

ParameterTesterMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension

Creates a new instance

ParameterTreeUI - Class in org.hkijena.jipipe.ui.components

Displays the contents of JIPipeParameterTree.

ParameterTreeUI() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI

Creates a new empty instance

ParameterTreeUI(JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI

Creates a new instance

ParameterTreeUI.Renderer - Class in org.hkijena.jipipe.ui.components

Renders the entries

ParameterUITester - Class in org.hkijena.jipipe.utils

UI that shows all parameter types

ParameterUITester(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.utils.ParameterUITester

Creates a new instance

PARSE_COLOR_DESCRIPTION - Static variable in class org.hkijena.jipipe.utils.ColorUtils

parseColor(String) - Static method in class org.hkijena.jipipe.utils.ColorUtils

Parses a color

ParseJsonFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ParseJsonFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ParseJsonFunction

passParametersToPython(PythonInterpreter, JIPipeCustomParameterCollection) - Static method in class org.hkijena.jipipe.utils.PythonUtils

PasswordParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter that stores a password

PasswordParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter

PasswordParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter

PasswordParameter(PasswordParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter

PasswordParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

PasswordParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

PasswordParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter editor for String

PasswordParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI

PasteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

PasteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot

PasteNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

PasteNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot

pasteNodes(JIPipeGraphCanvasUI, String) - Static method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

PathData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes

Encapsulates a Path

PathData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

Initializes file data from a file

PathData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

PathData() - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

PathDataImageJAdapter - Class in org.hkijena.jipipe.extensions.filesystem.compat

Allows importing of path data from within ImageJ The main 'ImageJ' data type is File, but this also allows conversion from String, Path and ResultsTable.

PathDataImageJAdapter(Class<? extends PathData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter

Creates a new instance

PathDataImporterUI - Class in org.hkijena.jipipe.extensions.filesystem.compat

Imports PathData

PathDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImporterUI

PathDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input file

PathDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

Initializes the algorithm

PathDataSource(PathDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

Copies the algorithm

PathDataToJIPipeOutputConverter - Class in org.hkijena.jipipe.extensions.utils.datatypes

PathDataToJIPipeOutputConverter() - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter

PathEditor - Class in org.hkijena.jipipe.installer.linux.ui.utils

Text field with a file selection

PathEditor() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

Creates a new file selection that opens a file

PathEditor(PathEditor.IOMode, PathEditor.PathMode) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

PathEditor - Class in org.hkijena.jipipe.ui.components

Text field with a file selection

PathEditor() - Constructor for class org.hkijena.jipipe.ui.components.PathEditor

Creates a new file selection that opens a file

PathEditor(PathEditor.IOMode, PathEditor.PathMode) - Constructor for class org.hkijena.jipipe.ui.components.PathEditor

PathEditor.IOMode - Enum in org.hkijena.jipipe.installer.linux.ui.utils

Determines if a path is opened or saved

PathEditor.IOMode - Enum in org.hkijena.jipipe.ui.components

Determines if a path is opened or saved

PathEditor.PathMode - Enum in org.hkijena.jipipe.installer.linux.ui.utils

Determines the type of selected path

PathEditor.PathMode - Enum in org.hkijena.jipipe.ui.components

Determines the type of selected path

PathFilterExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions.variables

ExpressionParameterVariableSource that defines one variable 'x' that references a filesystem path or file name.

PathFilterExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

PathList - Class in org.hkijena.jipipe.extensions.parameters.primitives

Collection of paths.

PathList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList

Creates a new instance

PathList(PathList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList

Creates a copy

PathListCellRenderer - Class in org.hkijena.jipipe.ui.components

PathListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.PathListCellRenderer

PathListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

Provides an input folder

PathListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

Creates a new instance

PathListDataSource(PathListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

Copies the algorithm

PathListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Editor for PathList

PathListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

PathQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

Expression for querying strings

PathQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

PathQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

PathQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

PathsToJIPipeProjectParametersAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

PathsToJIPipeProjectParametersAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm

PathsToJIPipeProjectParametersAlgorithm(PathsToJIPipeProjectParametersAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm

PathUtils - Class in org.hkijena.jipipe.utils

Utilities for handling paths

PercentileThreshold8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Wrapper around ImageProcessor

PercentileThreshold8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

Instantiates a new node type.

PercentileThreshold8U2DAlgorithm(PercentileThreshold8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

Instantiates a new node type.

pickColumn(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

Picks or generates a table column based on selecting by name, matching one column by boolean expressions, or using a mathematical expression.

PickNodeDialog - Class in org.hkijena.jipipe.ui.components

UI that adds slots to an algorithm

PickNodeDialog(Window, Set<JIPipeGraphNode>, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.PickNodeDialog

Pie2DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

Pie2DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

Creates a new instance

Pie2DPlotData(Pie2DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

Creates a copy

Pie3DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

Pie3DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

Creates a new instance

Pie3DPlotData(Pie3DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

Creates a copy

PiePlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for pie plots.

PiePlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a new instance

PiePlotData(PiePlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData

Creates a copy

PixelCoordinate2DExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Variable source that allows to address x, y

PixelCoordinate2DExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.PixelCoordinate2DExpressionParameterVariableSource

PixelHoverEvent(Point) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas.PixelHoverEvent

PlotColumn - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes

Defines that a PlotData has

PlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains all necessary data to generate a plot

PlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Creates a new empty instance

PlotData(PlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Creates a copy of the provided data

PlotData.Serializer - Class in org.hkijena.jipipe.extensions.plots.datatypes

Serializes the metadata of PlotData

PlotDataSeries - Class in org.hkijena.jipipe.extensions.plots.datatypes

A data series (table) that is rendered as plot series

PlotDataSeries() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a new instance with a null table

PlotDataSeries(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a new instance from a ResultsTable

PlotDataSeries(PlotDataSeries) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

Creates a copy

PlotDataSeries.Deserializer - Class in org.hkijena.jipipe.extensions.plots.datatypes

PlotDataSeries.Serializer - Class in org.hkijena.jipipe.extensions.plots.datatypes

PlotDataSeriesColumnListCellRenderer - Class in org.hkijena.jipipe.ui.plotbuilder

Renders entries

PlotDataSeriesColumnListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer

Creates a new renderer

PlotDataSlotPreview - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis

Renders a plot data as table cell

PlotDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreview

Creates a new renderer

PlotExporterDialog - Class in org.hkijena.jipipe.ui.components

Dialog that exports plots as image

PlotExporterDialog(JFreeChart) - Constructor for class org.hkijena.jipipe.ui.components.PlotExporterDialog

PlotGeneratorAlgorithm - Class in org.hkijena.jipipe.extensions.plots

Algorithm that creates PlotData from ResultsTableData

PlotGeneratorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

Creates a new instance

PlotGeneratorAlgorithm(PlotGeneratorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

Creates a copy

PlotMetadata - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes

Annotates a PlotData with information about plots

PlotReader - Class in org.hkijena.jipipe.ui.components

Displays a plot

PlotReader() - Constructor for class org.hkijena.jipipe.ui.components.PlotReader

Creates a new instance

PlotsExtension - Class in org.hkijena.jipipe.extensions.plots

Provides a standard selection of plots

PlotsExtension() - Constructor for class org.hkijena.jipipe.extensions.plots.PlotsExtension

PlotToImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

PlotToImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter

PlotToTableConverter - Class in org.hkijena.jipipe.extensions.plots.converters

PlotToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter

PointRange - Class in org.hkijena.jipipe.utils

Stores three points, representing the center point, and an area around it All values are absolute.

PointRange() - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a new point range at 0, 0 without areas around them

PointRange(PointRange) - Constructor for class org.hkijena.jipipe.utils.PointRange

PointRange(int, int) - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a new point range without margins around it

PointRange(Point, Point, Point) - Constructor for class org.hkijena.jipipe.utils.PointRange

Creates a point range and initializes all values

preferredLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout

PrefixedIconListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders entries in JIPipeIconPickerDialog

PrefixedIconListCellRenderer(String) - Constructor for class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer

preview(int, int) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

This function generates a preview component for usage within the GUI Can return null

preview(int, int) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

preview(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

PreviewControlUI - Class in org.hkijena.jipipe.ui.components

PreviewControlUI() - Constructor for class org.hkijena.jipipe.ui.components.PreviewControlUI

previousSlide() - Method in class org.hkijena.jipipe.utils.DotSlideshow

PRIMARY1 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY1 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY1 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

PRIMARY2 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY2 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY2 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

PRIMARY3 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY3 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY3 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

PRIMARY4 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY4 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY4 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

PRIMARY5 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY5 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY5 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

PRIMARY6 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

PRIMARY6 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

PRIMARY6 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

print() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Prints messages to the standard error

process(List<String>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

process(List<Object>) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker

process(List<Object>) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker

ProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater

Adapter between JIPipe and ImageJ progress implementations

ProgressAdapter(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

ProjectsSettings - Class in org.hkijena.jipipe.extensions.settings

Remembers the last projects

ProjectsSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings

ProjectsSettings.ProjectTemplateEnum - Class in org.hkijena.jipipe.extensions.settings

An enum of JIPipeProjectTemplate

ProjectTemplateEnum() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

ProjectTemplateEnum(ProjectsSettings.ProjectTemplateEnum) - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

pull() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

Extracts ImagePlusData from the GPU memory

pullOutput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Extracts algorithm output into ImageJ.

pushInput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

Pushes selected ImageJ data into the algorithm input slots

PythonExtension - Class in org.hkijena.jipipe.extensions.python

Python nodes

PythonExtension() - Constructor for class org.hkijena.jipipe.extensions.python.PythonExtension

PythonScript - Class in org.hkijena.jipipe.extensions.parameters.scripts

Encapsulates ImageJ macro code to be detected by the parameter system

PythonScript() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

PythonScript(PythonScript) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript

PythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

PythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

Creates a new instance

PythonScriptAlgorithm(PythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

Creates a copy

PythonUtils - Class in org.hkijena.jipipe.utils

Utilities for Jython

Q

query(Map<String, String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List

Filters only the named strings where the query applies.

queryAll(Collection<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

Returns all annotations that match the query

queryAll(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

Generates an annotation value

queryAll(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

Generates an annotation value

queryFirst(Collection<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression

Generates an annotation value

queryFirst(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

Queries a string out of the list

queryFirst(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

Queries a string out of the list

R

RadiansToDegreeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a abs(x) function

RadiansToDegreeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation

rank(Object, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRankingFunction

rank(Object, String[]) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceRanking

rank(Object, String[]) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetRanking

rank(UpdateSite, String[]) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking

rank(T, String[]) - Method in interface org.hkijena.jipipe.utils.RankingFunction

Ranks the value in conjunction with the filter strings

RankedData<T> - Class in org.hkijena.jipipe.utils

RankedData(T, String, int[]) - Constructor for class org.hkijena.jipipe.utils.RankedData

Ranking() - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking

RankingFunction<T> - Interface in org.hkijena.jipipe.utils

Models a search ranking function

readFromOverlays() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Returns rois if any from the overlay.

readFromRoiManager() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Returns the rois if any stored in the ROI manager.

readImageFrom(Path, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

Loads an image from a file path

realLocationToGrid(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

RealTimeProjectRunner - Class in org.hkijena.jipipe.ui.running

A tool that automatically runs 'update cache' when any parameter or graph property is changed

RealTimeProjectRunner(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

rebuild() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery

Rebuilds the stored states

rebuildModel() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

Recreates the tree model

rebuildPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Attempts to rebuild the current plot

RecentJsonExtensionsMenu - Class in org.hkijena.jipipe.ui.components

Menu that displays recently opened JIPipeJsonExtension

RecentJsonExtensionsMenu(String, Icon, JIPipeJsonExtensionWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu

RecentProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders a recent project

RecentProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer

RecentProjectsMenu - Class in org.hkijena.jipipe.ui.components

Menu that displays recently opened JIPipeProject

RecentProjectsMenu(String, Icon, JIPipeProjectWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectsMenu

recheckValidity() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

Revalidates the object

recheckValidity() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton

Triggers a validity check

RectangleDeserializer - Class in org.hkijena.jipipe.extensions.parameters.roi

Deserializer for Color

RectangleDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer

RectangleList - Class in org.hkijena.jipipe.extensions.parameters.roi

List parameter of Rectangle

RectangleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList

Creates a new instance

RectangleList(RectangleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList

Creates a copy

RectangleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi

Editor for a any numeric parameter

RectangleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

RectangleSerializer - Class in org.hkijena.jipipe.extensions.parameters.roi

Serializer for Rectangle

RectangleSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer

RectangularLine - Class in org.hkijena.jipipe.ui.grapheditor.connections

Contains coordinates of a line that is rectangular This abstracts away x and y for horizontal and vertical implementations

RectangularLine(int, int, int, int) - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine

RectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections

Encapsulates drawing rectangular lines

RectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

red - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

redo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

redo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

Repeats the operation

redo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Repeats the last reverted operation

redo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

redo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

redrawPlot() - Method in class org.hkijena.jipipe.ui.components.PlotReader

Redraws the plot

ReferencedAppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ReferencedAppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedAppendRectangularRoiAlgorithm(ReferencedAppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedDefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

ReferencedDefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

Instantiates a new node type.

ReferencedDefineRectangularRoiAlgorithm(ReferencedDefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

Instantiates a new node type.

reflectionAccess(JIPipeParameterCollection, Method, Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets up access via reflection The field class is extracted from the getter return type

ReflectionUtils - Class in org.hkijena.jipipe.utils

Utilities around reflection

refreshForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Recreates the UI elements.

refreshImageInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

refreshList() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

RefreshRepositoryRun - Class in org.hkijena.jipipe.ui.ijupdater

A run that is used for the updater

RefreshRepositoryRun() - Constructor for class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

refreshSlice() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Updates the UIs for slots

refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

refreshTable() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

refreshTable() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

Rebuilds the table to show the updated preview

refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

Refreshes the list

refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

Refreshes the list

refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

Rebuilds the tree

refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

Rebuilds the tree

refreshUpdater() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

RegexStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

RegexStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction

register() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension

register() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension

register() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask

register(String, Class<? extends JIPipeData>, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a data type

register(ImageJDatatypeAdapter) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Registers an adapter

register() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

register() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask

Runs the registration

register(JIPipeNodeInfo, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Registers an algorithm info

register(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Registers a new parameter type

register(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Registers a new settings sheet

register() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension

register() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension

register() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension

register() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension

register() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension

register() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

register() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension

register() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension

register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension

register() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension

register() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension

register() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

register() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension

register() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension

register() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

register() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension

register() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension

register() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension

register() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

register(JIPipeJsonExtension) - Method in class org.hkijena.jipipe.JIPipe

Registers a JSON extension

register() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Registers custom modules into JIPipe

register() - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Registers the content.

registerCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Registers a category

registerColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

Registers a new operation.

registerConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a data converter that allows implicit conversion between data types

registerDatatype(String, Class<? extends JIPipeData>, URL, Class<? extends JIPipeResultDataSlotRowUI>, Class<? extends JIPipeResultDataSlotPreview>, JIPipeDataOperation...) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new data type

registerDatatypeConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a non-trivial conversion between data types.

registerDatatypeDisplayOperation(String, JIPipeDataDisplayOperation) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an additional non-default display operation for the data type.

registerDatatypeImportOperation(String, JIPipeDataImportOperation) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an import operation for the data type.

registerDatatypeOperation(String, JIPipeDataOperation...) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Shortcut for registering import and display operations.

registerDisplayOperation(String, JIPipeDataDisplayOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers an operation that will be available to users in the cache view

registerEnumParameterType(String, Class<? extends Enum<?>>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an Enum as parameter

registerExpressionFunction(ExpressionFunction, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry

Registers an new function that will be usable within expressions.

registerExpressionFunction(ExpressionFunction, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a function that can be used within expressions.

registerExpressionFunction(ExpressionFunction) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a function that can be used within expressions.

registerGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Registers a UI that can generate parameters

registerGraphEditorToolBarButton(Class<? extends GraphEditorToolBarButtonExtension>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

registerGraphEditorToolBarButtonExtension(Class<? extends GraphEditorToolBarButtonExtension>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a custom button for the graph editor toolbar

registerIcon(Class<? extends JIPipeData>, URL) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a custom icon for a datatype

registerIcon(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Registers a custom icon for a trait

registerImageJDataAdapter(ImageJDatatypeAdapter, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an adapter between ImageJ and JIPipe data types

registerImporterFor(Class<?>, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

registerImportOperation(String, JIPipeDataImportOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers an operation that will be available to users in the results view (after runs).

registerJsonExtensionFromFile(Path) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules a registration task for the file path

registerJsonExtensionFromResource(String) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules a registration task for a resource path

registerMenu(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry

Registers a new extension

registerMenuExtension(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a custom menu entry.

registerNodeType(String, Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(String, Class<? extends JIPipeGraphNode>, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type.

registerNodeType(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new node type with additional dependencies.

registerNodeTypeCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a node type category

registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry

Registers a new parameter type

registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers an editor for any parameter type that inherits from the provided parameter class.

registerParameterGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a UI that can generate parameters

registerParameterType(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editors

registerParameterType(String, Class<T>, Class<? extends ListParameter<T>>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editors

registerParameterType(JIPipeParameterTypeInfo, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editor

registerParameterType(JIPipeParameterTypeInfo, Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new parameter type and respective editor

registerResultSlotUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotRowUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a custom UI for a result data slot

registerResultTableCellUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotPreview>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry

Registers a custom renderer for the data displayed in the dataslot result table

registerSettingsSheet(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a new settings sheet

registerSubParameter(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Registers a sub-parameter instance to pass ParameterStructureChangedEvent via this algorithm's EventBus

registerTableColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a table column operation.

registerTableColumnOperationAndExpressionFunction(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

Registers a table column operation.

relative(int) - Static method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

RelativizeByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RelativizeByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

RelativizeByParameter(RelativizeByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

Copies the algorithm

RelativizePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RelativizePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

RelativizePaths(RelativizePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

Copies the algorithm

reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI

reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI

reload() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Reloads the settings from the default file if it exists

reload() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

reload() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel

Reloads the UI

reload() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Reloads the value from the stored parameter

ReloadableValidityChecker - Class in org.hkijena.jipipe.ui.components

Panel that encapsulates a JIPipeValidityReportUI and an JIPipeValidatable.

ReloadableValidityChecker(JIPipeValidatable) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

ReloadableValidityChecker(JIPipeValidatable, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Is called when the button's visual feedback should be updated

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

reloadEntries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI

Reloads entries in this panel

reloadForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

Reloads the form.

reloadList() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI

Reloads the list

reloadList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI

Reloads the list of data sources

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

Reloads the menu bar

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Reloads the menu bar

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Is called when the name parameter was changed

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI

reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI

reloadPopupMenu() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI

Reloads the "Assign" popup menu

reloadSlotUI() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI

Reloads the slots

reloadSlotUI() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI

Reloads the slots

REMOVE_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules from mask data types to their respective 8-bit types

removeActionListener(ActionListener) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

removeActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor

removeAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Removes an algorithm

removeAllAnnotationsFromData(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Removes an annotation column from the data

RemoveAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Removes a specified annotation

RemoveAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm

RemoveAnnotationAlgorithm(RemoveAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm

Copies the algorithm

RemoveArrayAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms

RemoveArrayAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

RemoveArrayAnnotationsAlgorithm(RemoveArrayAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

removeAttachment(Class<?>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes an attachment

RemoveBorderRoisAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RemoveBorderRoisAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

Instantiates a new node type.

RemoveBorderRoisAlgorithm(RemoveBorderRoisAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

Instantiates a new node type.

removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Removes a column

removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Removes the specified column

RemoveColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RemoveColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

Creates a new instance

RemoveColumnAlgorithm(RemoveColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

Creates a copy

removeColumnAt(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Removes the column with the specified index

removeColumns(Collection<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Removes the columns with given headings

removeCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject

Removes a compartment

removeCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes a whole compartment from the graph.

removeContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

Adds a new element into the group

removeData(List<TableColumn>) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Removes the data

RemoveDuplicatesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

RemoveDuplicatesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction

removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Removes an algorithm from the selection

removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Removes an algorithm from the selection

removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Removes an annotation of provided type

removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Removes an annotation of provided type

removeGroup(GraphNodeParameterReferenceGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

Removes the group

removeHTMLRoot(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Removes the HTML root from HTML

removeHTMLRoot(String) - Static method in class org.hkijena.jipipe.utils.StringUtils

Removes the HTML root from HTML

removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes the slot with given name

removeInputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

removeLastRow() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Removes the last row.

removeLastRow() - Method in class org.hkijena.jipipe.ui.components.FormPanel

Removes the last row.

RemoveLUTAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

RemoveLUTAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

RemoveLUTAlgorithm(RemoveLUTAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

RemoveNAAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms

RemoveNAAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm

RemoveNAAnnotationColumnsAlgorithm(RemoveNAAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm

RemoveNaNColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sets NaN values to zero

RemoveNaNColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation

RemoveNaNFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math

Wrapper around RankFilters

RemoveNaNFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

Instantiates a new node type.

RemoveNaNFilter2DAlgorithm(RemoveNaNFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

Instantiates a new node type.

removeNode(JIPipeGraphNode, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes an algorithm.

RemoveNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history

RemoveNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

removeNodes(Set<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Removes multiple nodes at once

RemoveOutliersFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

Wrapper around RankFilters

RemoveOutliersFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

Instantiates a new node type.

RemoveOutliersFilter2DAlgorithm(RemoveOutliersFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

Instantiates a new node type.

RemoveOutliersFilter2DAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise

The two different modes of this filter

removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Removes the slot with given name

removeOutputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration

removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration

removeParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Removes a parameter

removeParameterByKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Removes a parameter by key

removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

Removes a row

removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

Removes the row with the specified index

removeRow(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

removeRows(Collection<Integer>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

removeSelectedROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

removeSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Removes a series

removeSeries(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

Removes a series from the series builder

removeSnapshot(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Removes a snapshot.

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

removeUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener

removeUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener

removeUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

RenameByString - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Applies subfolder navigation to each input folder

RenameByString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

RenameByString(RenameByString) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

Copies the algorithm

renameColumn(String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Renames a column

renameCompartment(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Renames a compartment

renamedCopy(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

RenameSingleColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RenameSingleColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

Creates a new instance

RenameSingleColumnsAlgorithm(RenameSingleColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

Creates a copy

RenameTableColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RenameTableColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

Creates a new instance

RenameTableColumnsAlgorithm(RenameTableColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

Creates a copy

RenameTableColumnsToAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that removes columns

RenameTableColumnsToAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

Creates a new instance

RenameTableColumnsToAnnotationAlgorithm(RenameTableColumnsToAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

Creates a copy

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer

Creates a new renderer

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer

Creates a new renderer

Renderer() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer

Creates a new instance

renderGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

Formats the generation time

renderIcon(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the icon.

renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the icon.

renderIcon(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderInputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput

renderInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Controls whether to render input slots.

renderLabel(Measurement) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

renderLabel(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter

renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the label.

renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the label.

renderLabel(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum

renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput

renderOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Controls whether to render output slots.

renderParameterName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter

renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter

renderPreview() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreview

renderPreview() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview

Renders the preview if it is not already rendered

renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview

renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreview

renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview

This function is called from outside to render the preview.

renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

Function that renders the tooltip.

renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

Function that renders the tooltip.

renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

ReorderDimensionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Algorithm that reorders Hyperstack dimensions

ReorderDimensionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

ReorderDimensionsAlgorithm(ReorderDimensionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

repairGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Repairs the graph by removing old nodes and adding missing ones

replaceCompartmentOutput(JIPipeCompartmentOutput) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

Replaces a JIPipeCompartmentOutput by an equivalent IOInterfaceAlgorithm

replaceWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Replaces all contents with the ones in the other graph Does not apply copying!

report(JIPipeValidityReport.Response, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports a response

report(JIPipeValidatable) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Passes the report to another JIPipeValidatable

report(boolean, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports validity or invalidity

reportIsInvalid(JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports that this report is invalid

reportIsInvalid(String, String, String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Reports that this report is invalid

reportIsValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport

Report that is report is valid

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject

reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProject

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.api.JIPipeValidatable

Generates a validity report

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport, JIPipeGraphNode, Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Reports the validity for the target node and its dependencies

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipe

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.JIPipeDependency

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

REQUEST_OPEN_CONTEXT_MENU - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

REQUEST_RUN_AND_SHOW_RESULTS - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

REQUEST_UPDATE_CACHE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

requestCancelRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

Cancels the run

requestCancelRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Cancels the run

requestCancelRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI

Cancels the run

requestFocusInWindow() - Method in class org.hkijena.jipipe.ui.components.SearchBox

resetZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

resolve(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

Tries to resolve the path

resolve(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

resolve(String, int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

resolve(String) - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus

Adds a new sub-category to the current task.

resolve() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

resolveAndLog(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

resolveAndLog(String, int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

ResolveDependencies - Class in org.hkijena.jipipe.ui.ijupdater

ResolveDependencies(Window, FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

ResolveDependencies(Window, FilesCollection, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

ResolveVariableOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

ResolveVariableOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator

RESOURCE_BASE_PATH - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

RESOURCE_BASE_PATH - Static variable in class org.hkijena.jipipe.utils.ResourceUtils

ResourceUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils

Functions for resource access

ResourceUtils() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

ResourceUtils - Class in org.hkijena.jipipe.utils

Functions for resource access

ResourceUtils() - Constructor for class org.hkijena.jipipe.utils.ResourceUtils

restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

Restores the backup to the input algorithm

restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

Restores the snapshot

restore(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

Restores the snapshot into the target algorithm

restore(JIPipeProjectWorkbench) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

restoreParameters(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup

Restores the parameter to a compatible foreign algorithm

restoreStandardTabs(boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

restrictInputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restrict the number of input slots

restrictInputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictInputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictOutputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restrict the number output slots

restrictOutputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

restrictOutputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Restricts the slot to specified data types

resultsTable(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

ResultsTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes

Data containing a ResultsTable

ResultsTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a new instance

ResultsTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a ResultsTableData from a map of column name to column data

ResultsTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a ResultsTableData from a list of columns.

ResultsTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Wraps a results table

ResultsTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Creates a copy

ResultsTableData.Deserializer - Class in org.hkijena.jipipe.extensions.tables.datatypes

ResultsTableData.Index - Class in org.hkijena.jipipe.extensions.tables.datatypes

Points to a cell in the table

ResultsTableData.IntegratingColumnOperationEntry - Class in org.hkijena.jipipe.extensions.tables.datatypes

An entry for obtaining statistics/integrated values

ResultsTableData.Serializer - Class in org.hkijena.jipipe.extensions.tables.datatypes

ResultsTableDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between ResultsTableData and ResultsTable

ResultsTableDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter

ResultsTableDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

UI for a ResultsTableDataImageJAdapter

ResultsTableDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImporterUI

ResultsTableDataList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

A list of ResultsTableData

ResultsTableDataList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList

Creates a new instance

ResultsTableDataList(ResultsTableDataList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList

Creates a copy

ResultsTableDataListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders ResultsTableData

ResultsTableDataListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer

Creates new instance

ResultsTableDataParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters

Editor for ResultsTableData

ResultsTableDataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI

Creates new instance

ResultsTableDataPreview - Class in org.hkijena.jipipe.extensions.tables

ResultsTableDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.tables.ResultsTableDataPreview

Creates a new renderer

ResultsTableFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Imports ResultsTableData from a file

ResultsTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

ResultsTableFromFile(ResultsTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

Copies the algorithm

ResultsTableFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ResultsTableFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

ResultsTableFromGUI(ResultsTableFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

ResultsTableToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ResultsTableToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

ResultsTableToGUI(ResultsTableToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

rgbToChannels(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Convert a RGB image to a grayscale image where the RGB channels are split into individual planes

ROI_PROCESSOR_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

RoiCalculatorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiCalculatorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

Instantiates a new node type.

RoiCalculatorAlgorithm(RoiCalculatorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

Instantiates a new node type.

ROIDataFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources

Loads ROI data from a file via IJ.openFile()

ROIDataFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

ROIDataFromFile(ROIDataFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

Copies the algorithm

ROIDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Adapter between RoiManager and ROIListData

ROIDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter

ROIDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat

Importer around ROIDataImageJAdapter

ROIDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImporterUI

ROIDataImportIntoImageOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ROIDataImportIntoImageOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

ROIDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis

ROIDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataPreview

Creates a new renderer

ROIFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ROIFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

ROIFromGUI(ROIFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

ROIHandler - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util

Copy of ROIHandler to

ROIHandler() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

RoiListCellRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer

RoiListCellRenderer() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.RoiListCellRenderer

ROIListData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes

Contains Roi

ROIListData() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates an empty set of ROI

ROIListData(List<Roi>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Creates a deep copy

ROIListData(RoiManager) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Initializes from a RoiManager

RoiNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

RoiNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory

RoiOutline - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util

Available ways to address the shape of a Roi

RoiOverlapStatisticsVariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

RoiOverlapStatisticsVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource

RoiPropertiesToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

RoiStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

Instantiates a new node type.

RoiStatisticsAlgorithm(RoiStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

Instantiates a new node type.

ROIToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Imports ImagePlusData from the GUI

ROIToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

ROIToGUI(ROIToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

RoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

Instantiates a new node type.

RoiToMaskAlgorithm(RoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

Instantiates a new node type.

RoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

RoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

Instantiates a new node type.

RoiToRGBAlgorithm(RoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Wrapper around RankFilters

RollingBallBackgroundEstimator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm(RollingBallBackgroundEstimator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

Instantiates a new node type.

RollingBallBackgroundEstimator2DAlgorithm.BackgroundType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Available background types

RollingBallBackgroundEstimator2DAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background

Available methods

rootPanel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

rotate(ImagePlus, double, boolean, Color, boolean, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Rotates the image by a specified amount of degrees to the right

rotateRight() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

rotateTabRuns(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout

RoundColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

RoundColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation

RoundedLineBorder - Class in org.hkijena.jipipe.installer.linux.ui.utils

Rounded line border that actually works https://stackoverflow.com/questions/52759203/rounded-lineborder-not-all-corners-are-rounded

RoundedLineBorder(Paint, int, int) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder

RoundedLineBorder(Paint, int, int, boolean) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder

RoundedLineBorder - Class in org.hkijena.jipipe.utils

Rounded line border that actually works https://stackoverflow.com/questions/52759203/rounded-lineborder-not-all-corners-are-rounded

RoundedLineBorder(Paint, int, int) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder

RoundedLineBorder(Paint, int, int, boolean) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder

Row() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Creates new instance

row - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index

RowIndexTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

Generates numbers from 0 to row count

RowIndexTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

rowIsVirtual(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Returns whether a row is virtual (unloaded) or non-virtual (present in memory)

rowToFile - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

run() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

run() - Method in class org.hkijena.jipipe.api.JIPipeRun

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Runs the workload

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

run() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter

run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in interface org.hkijena.jipipe.installer.linux.api.JIPipeRunnable

Runs the runnable

run() - Method in class org.hkijena.jipipe.JIPipeGUICommand

run() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand

run() - Method in class org.hkijena.jipipe.JIPipeRunCommand

run() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

run() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

run() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun

run() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun

run() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun

run() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Runs the workload

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

run() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

run() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun

run() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

run() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

RunAndShowResultsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

RunAndShowResultsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction

runInDialog(JIPipeRunnable) - Static method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

Runs code on one data row

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

Runs code on one data row

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

Runs code on one data row

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm

runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

RunJIPipeProjectAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

Runs a JIPipe project

RunJIPipeProjectAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

RunJIPipeProjectAlgorithm(RunJIPipeProjectAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

runOnImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs a command on an ImageJ image

runOnImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs a command on a copy of an ImageJ image

runOnNewImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs a command on a copy of an ImageJ image

runOnNewImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Runs a command on a copy of an ImageJ image

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

Runs a parameter set iteration

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Runs the pass through.

runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations

runProject(JIPipeProject, Path, int) - Static method in class org.hkijena.jipipe.JIPipe

Runs a project in the current thread.

runProject(JIPipeProject, JIPipeRunSettings) - Static method in class org.hkijena.jipipe.JIPipe

Runs a project in the current thread.

runRegistrationTask(JsonExtensionRegistrationTask) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Immediately runs a registration task.

runRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Attempts to run registration tasks that have registered dependencies

RunSingleAlgorithmDialog - Class in org.hkijena.jipipe.ui.compat

UI for SingleImageJAlgorithmRun

RunSingleAlgorithmDialog(Context) - Constructor for class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

runTestBench(boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI

Activates and runs the quick run as automatically as possible.

RuntimeSettings - Class in org.hkijena.jipipe.extensions.settings

Settings related to how algorithms are executed

RuntimeSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Creates a new instance

RunUIWorkerFinishedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events

Generated when an JIPipeRunWorker finished its work

RunUIWorkerFinishedEvent(JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent

RunUIWorkerFinishedEvent - Class in org.hkijena.jipipe.ui.running

Generated when an JIPipeRunWorker finished its work

RunUIWorkerFinishedEvent(JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent

RunUIWorkerInterruptedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events

Generated when work of an JIPipeRunWorker is interrupted

RunUIWorkerInterruptedEvent(JIPipeRunWorker, Exception) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent

RunUIWorkerInterruptedEvent - Class in org.hkijena.jipipe.ui.running

Generated when work of an JIPipeRunWorker is interrupted

RunUIWorkerInterruptedEvent(JIPipeRunWorker, Exception) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent

RunUIWorkerProgressEvent - Class in org.hkijena.jipipe.installer.linux.ui.events

Generated when an JIPipeRunWorker reports progress

RunUIWorkerProgressEvent(JIPipeRunWorker, JIPipeRunnerStatus) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent

RunUIWorkerProgressEvent - Class in org.hkijena.jipipe.ui.running

Generated when an JIPipeRunWorker reports progress

RunUIWorkerProgressEvent(JIPipeRunWorker, JIPipeProgressInfo.StatusUpdatedEvent) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent

RunUIWorkerStartedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events

Generated when an JIPipeRunWorker was started

RunUIWorkerStartedEvent(JIPipeRunnable, JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent

RunUIWorkerStartedEvent - Class in org.hkijena.jipipe.ui.running

Generated when an JIPipeRunWorker was started

RunUIWorkerStartedEvent(JIPipeRunnable, JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent

S

save(Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Saves the data to the storage path

save(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Saves the settings to the specified file

save() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry

Saves the settings to the default settings file

saveAsCSV(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Saves the table to CSV

saveAsCSV(Path) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Saves the table as CSV

saveAsJson(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Saves the table to JSON

saveDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a directory

saveDirectory(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a directory

saveFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file

saveFile(Component, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a file

savePath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Lets the user choose a file or directory

savePath(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Lets the user choose a file or directory

saveProject(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject

Saves the project

saveProject(Path) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Saves the extension

saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

Saves the project

saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

Saves the project

saveROIs(MetadataStore, ROIListData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler

Save ROIs in the ROI manager to the given MetadataStore.

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.data.JIPipeData

Saves the data to a folder

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.strings.StringData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference

saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData

saveToJson(Path) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Saves the exported compartment to JSON

scaleHSV(Color, float, float, float) - Static method in class org.hkijena.jipipe.utils.ColorUtils

Applies scaling in HSV space

ScatterXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

ScatterXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

Creates a new instance

ScatterXYPlotData(ScatterXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData

Creates a copy

schedule(Runnable) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Schedules a runnable

scheduleBatches(List<Runnable>, int) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Schedules multiple tasks at once, split into batches.

scheduleRegister(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Schedules registration after all dependencies of the registration task are satisfied

scheduleRegisterJsonExtension(Path, JsonNode) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Schedules the registration of an extension Invalid JSON data is skipped

scheduleRun() - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner

ScreenImage - Class in org.hkijena.jipipe.utils

Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.

ScreenImage() - Constructor for class org.hkijena.jipipe.utils.ScreenImage

ScreenImageSVG - Class in org.hkijena.jipipe.utils

Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.

ScreenImageSVG() - Constructor for class org.hkijena.jipipe.utils.ScreenImageSVG

ScreenshotWholeGraphToolPNG - Class in org.hkijena.jipipe.extensions.tools

ScreenshotWholeGraphToolPNG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolPNG

Creates a new instance

ScreenshotWholeGraphToolSVG - Class in org.hkijena.jipipe.extensions.tools

ScreenshotWholeGraphToolSVG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolSVG

Creates a new instance

ScriptParameter - Class in org.hkijena.jipipe.extensions.parameters.scripts

A parameter that contains some kind of script

ScriptParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Creates a new empty code

ScriptParameter(ScriptParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

Copies the code

ScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts

Parameter editor for ScriptParameter

ScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI

scrollToAlgorithm(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Scrolls to the specified algorithm UI

seal() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals input and output

sealInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals input

sealOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Seals output

SearchBox<T> - Class in org.hkijena.jipipe.ui.components

A JComboBox that implements a search behavior

SearchBox() - Constructor for class org.hkijena.jipipe.ui.components.SearchBox

Creates a new instance

SearchBox.SelectedEvent<T> - Class in org.hkijena.jipipe.ui.components

SearchTextField - Class in org.hkijena.jipipe.ui.components

A JXTextField designed for searching

SearchTextField() - Constructor for class org.hkijena.jipipe.ui.components.SearchTextField

Creates a new instance

SearchTextFieldTableRowFilter - Class in org.hkijena.jipipe.ui.components

Filters string entries via a SearchTextField

SearchTextFieldTableRowFilter(SearchTextField) - Constructor for class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter

SECONDARY1 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

SECONDARY1 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

SECONDARY1 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

SECONDARY2 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

SECONDARY2 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

SECONDARY2 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

SECONDARY3 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

SECONDARY3 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

SECONDARY3 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

selectAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

SelectAllNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

SelectAllNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction

SelectAndMoveNodeHereNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

SelectAndMoveNodeHereNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction

selectColor - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

selectDataSlot(JIPipeProjectCacheState, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree

Selects a node by state and slot

SelectedDataTypesChangedEvent(JIPipeDataTypePicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent

SelectedEvent(SearchBox<T>, T) - Constructor for class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent

SelectedTraitsChangedEvent(JIPipeNodeInfoPicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent

selectEnd() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

selectHighlight - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

selectItem(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI

Displays the documentation of the specified algorithm

selectMulti(Component, String, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Generic open method for multiple paths.

selectMulti(Component, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Generic open method for multiple paths.

selectNewestState() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree

selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Selects only the specified algorithm

selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Selects only the specified algorithm

selectSingle(Component, String, String, PathEditor.IOMode, PathEditor.PathMode, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Generic open/save method for single paths

selectSingle(Component, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings

Generic open/save method for single paths

selectSingletonTab(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Re-opens or selects a singleton tab

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench

Sends a text to the status bar

sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Sends a text to the status bar

sendStatusBarText(String) - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench

Sends a text to the status bar

SEPARATOR - Static variable in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction

Indicates that a separator is created

serialize(JIPipeExportedCompartment, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer

serialize(SingleImageJAlgorithmRun, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer

serialize(JIPipeDataInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer

serialize(JIPipeDataSlotInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer

serialize(JIPipeSlotConfiguration, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer

serialize(NodeGroupContents, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer

serialize(JIPipeProject, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.JIPipeProject.Serializer

serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

serialize(JIPipeEmptyNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer

serialize(JIPipeGraph, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer

serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer

serialize(JIPipeJavaNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer

serialize(ParametersData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer

serialize(ListParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer

serialize(Color, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer

serialize(DynamicCategoryEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer

serialize(FunctionParameter<?, ?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer

serialize(IntegerRange, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer

serialize(Matrix2D<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer

serialize(OptionalParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer

serialize(PairParameter<?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Serializer

serialize(DynamicStringEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer

serialize(PasswordParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Serializer

serialize(JIPipeAlgorithmIconRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer

serialize(JIPipeDataInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer

serialize(JIPipeNodeInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer

serialize(Rectangle, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer

serialize(ParameterTable, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer

serialize(PlotData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer

serialize(PlotDataSeries, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Serializer

serialize(ResultsTableData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Serializer

serializeParameter(Map.Entry<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

Returns true if the parameter should be serialized

serializeParametersToJson(JIPipeParameterCollection, JsonGenerator) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Serializes parameters to JSON using a generator

serializeParametersToJson(JIPipeParameterCollection, JsonGenerator, Predicate<Map.Entry<String, JIPipeParameterAccess>>) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Serializes parameters to JSON using a generator

Serializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Serializer

Serializer() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Serializer

set(T) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

set(T) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess

Sets the parameter value

set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

set(U) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess

set(U) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess

set(T) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess

setAcceptedDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Sets the accepted slot type Please note that this method can cause issues when running the graph

setAcceptedDataTypeId(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the accepted datatype ID

setActions(List<JIPipeParameterTree.ContextAction>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setAddableAlgorithms(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

setAddAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

setAddContextActionsToContextMenu(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setAddDataToString(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

setAddFileExtension(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setAdditionalMetadata(Map<String, Object>) - Method in class org.hkijena.jipipe.api.JIPipeProject

setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setAddNameToTable(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setAffiliations(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setAfterSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

setAlgorithmInstance(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration

setAlgorithmsWithExternalInput(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

setAllowCache(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setAllowedInputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setAllowedOutputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setAllowedTypes(Set<Class<?>>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Sets allowed parameter types

setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

setAllowInheritedOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Enables/Disables if output slots can inherit from input slots

setAllowSkipAlgorithmsWithoutInput(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setAllowUserModification(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Enabled/disables if modification by users is allowed

setAllSlotsVirtual(boolean, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets/unsets virtual mode for all output slots

setAlpha(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setAnchor(TableToRectangularROIAlgorithm.Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setAngle(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

setAnnotateSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

setAnnotateWithChannelIndex(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotateWithSlotName(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationBoundingHeight(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationBoundingWidth(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationC(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setAnnotationC(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationCLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setAnnotationColumnChannelIndex(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationColumnSlotName(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setAnnotationExpression(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm

setAnnotationExpression(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath

setAnnotationMap(Map<Class<? extends Annotation>, Annotation>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm

setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

setAnnotationPrefix(String) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm

setAnnotations(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Sets annotations

setAnnotations(Map<String, JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

setAnnotations(Map<String, JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

setAnnotations(NamedAnnotationGeneratorExpression.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

setAnnotationsFromPython(PyDictionary, Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

Sets annotations from a Python dictionary

setAnnotationT(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setAnnotationT(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationTLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setAnnotationType(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

setAnnotationX(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setAnnotationX(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationXLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setAnnotationY(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setAnnotationY(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationYLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setAnnotationZ(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setAnnotationZ(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setAnnotationZLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setAppend(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

setAppendDataTypeAsMetadata(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setAppendDataTypeMetadataKey(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setAppendDataTypeUsesRealDataType(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setAppendDirectoryNameToTarget(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setApplyDespeckle(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setApplyFirstCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setApplyGaussian(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setApplyInternalGradient(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setApplyMerging(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setApplySecondCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setArtifactPaint(Paint) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the paint used to color the median and average markers and sends a RendererChangeEvent to all registered listeners.

setAskOnDeleteCompartment(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAskOnDeleteNode(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAskOnDeleteParameter(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAssembleTemplates(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setAssembleTemplatesBackground(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setAssembleTemplatesOutput(OptionalDataInfoRefParameter) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setAttachOnlyNonDefaultParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setAttachParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setAuthors(JIPipeAuthorMetadata.List) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the authors

setAutoCalibrateAfterPulling(boolean) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

setAutoClamp(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setAutoLayout(GraphAutoLayout) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setAutoSaveDelay(int) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

setAutoSaveLastDisplay(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

setAutoSaveLastImporter(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

setAutoScale(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setAutoScale(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setAvailableParameters(Map<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets the list of available parameters

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setBackgroundImage(BufferedImage) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel

setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setBandwidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setBaseName(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

setBaseName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

setBinAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setBinAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setBins(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setBins(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setBioFormatsCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

setBitDepthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setBlackBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setBlackBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

setBlockRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d

setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBlurSigmaZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d

setBorderColor(Color) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

setBorderColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

setBorderDefinition(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setBottom(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setC(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

setCalibrationMode(ImageJCalibrationMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCancel(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent

setCanvas(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior

setCanvas(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior

setCanvas(JIPipeGraphCanvasUI) - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior

Sets the canvas that contains the algorithm nodes

setCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the category

setCategoryAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setCategoryAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setCategoryParameter(DynamicCategoryEnumParameter) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface

setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface

setChangedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

setChannelName(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

setChannelReordering(IntegerAndIntegerPairParameter.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

setChannelSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setChildren(BiMap<String, JIPipeParameterTree.Node>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setCitation(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the citation

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

setCode(ImageJMacro) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

setCode(String) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

setCollapsed(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter

setCollection(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm

setColor(Color) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon

setColorMap(ColorMap) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon

setColorMap(ColorMap) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setColorMode(OMEColorMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setColorMode(OMEColorMode) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setColumn(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths

setColumn(String, TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Sets a column from another table column.

setColumn(String, TableColumn, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Sets a column from another table column.

setColumnFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

setColumnFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

setColumnHeight(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnName(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn

setColumnRadius(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumns(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setColumns(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setColumns(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setColumns(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

setColumns(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

setColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

setColumnToValue(String, Object) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Sets a column to a value.

setColumnWidth(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnX1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumnX1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnX2(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnY1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

setColumnY1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setColumnY2(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the compartment the algorithm is location in

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

setComponentNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setConcatenate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setConcatenate(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setConfirmIcon(Icon) - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton

setContent(List<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setContent(T) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

setContents(NodeGroupContents) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

setContentX(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setContentXY(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setContentY(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setContext(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

setContextActions(List<NodeUIContextAction>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setConverter(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge

setCorrectCorners(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setCountAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setCounterAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

setCreateComposite(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

setCreateLauncher(boolean) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

setCrop(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setCrop(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setCropC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropRegions(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setCropRegions(RectangleList) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setCropT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropXY(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCropZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm

setCurrentConnectionDragSource(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentConnectionDragTarget(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentHighlightedForDisconnect(JIPipeDataSlotUI, Set<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setCurrentlySelectedValue(Object) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI

Sets the selected value * * @param currentlySelectedValue The value

setCustomColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setCustomColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setCustomDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setCustomDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets a custom description.

setCustomMax(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCustomMin(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setCustomName(String) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

setCustomName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

Overrides the name displayed in the UI

setCustomName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setCustomName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets a custom name.

setDarkBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch

Sets the data row of a given slot.

setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Sets the input slot to only one row

setDatasetId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

setDatasetIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource

setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setDatasetNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setDatasetNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setDatasetNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setDataToString(Function<T, String>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setDeduplicate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setDefaultPassword(PasswordParameter) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

setDefaultRunThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Sets the number of threads

setDefaultServer(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

setDefaultSortOrder(SortOrder) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

setDefaultTestBenchThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

Sets the number of threads for test bench

setDefaultUserName(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

setDefaultViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setDeltaAngle(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setDependencyAlgorithmIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

setDependencyCitations(StringList) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

setDependencyDatatypeClasses(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

Sets dependency data classes.

setDependencyDatatypeIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask

setDependencyId(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the ID

setDependencyVersion(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the version

setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the description

setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setDescription(String) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel

Sets the description and sets the visibility

setDescription(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setDescription(String) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel

Sets the description and sets the visibility

setDespeckleIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d

setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDestination_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d

setDevice(int) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

setDilationErodeSteps(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setDilationIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setDimension(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate

setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setDimensionOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setDiscardExistingAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable

setDisplayedParameters(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel

setDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

setDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

setDocumentation(JIPipeDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setDoScaling(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setDoubleValue(double) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setDragAndDropBehavior(JIPipeGraphDragAndDropBehavior) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDrawOutsideEdges(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm

setEigenvalueSelection(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setEigenvalueSelection2D(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setEmail(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings

setEnableAutoSave(boolean) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

setEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

setEnabled(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

setEnabled(boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

setEnableLayoutHelper(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setEqualsString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setErosionIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setErroneousNodes(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setErroneousPlugins(Set<PluginInfo<JIPipeJavaExtension>>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setError(Component) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setExactValue(int) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setExcludeEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setExcludeOnEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setExcludeSelected(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setExpandCanvas(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

setExpectedNumberOfObjects(int) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setExponent(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup

setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

setExporterSettings(OMEExporterSettings) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

setExportHeight(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setExportWidth(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setExpression(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

setExpression(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

setExpression(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI

setExpressionList(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm

setExtensionFilters(List<FileNameExtensionFilter>) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setExtensionFilters(String[]) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setExtractRois(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setExtractRois(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setFactor(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

setFactor(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

setFactor(double) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setFactor1(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted

setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d

setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFactorZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d

setFastMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the field class

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal usage only

setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setFileName(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

Sets the file name

setFileNameAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

setFileNames(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

Sets the file names

setFiles(Iterable<FileObject>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setFiles(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

setFillBox(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the box is filled and sends a RendererChangeEvent to all registered listeners.

setFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setFillColor(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setFillColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon

setFillColorAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setFillMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setFilter(TableCellValueQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

setFilterExpression(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm

setFirstColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setFirstIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setFirstName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setFlipMode(TransformFlip2DAlgorithm.FlipMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

setFlipTemplateHorizontally(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setFlipTemplateVertically(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setFloatingPointOutput(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

setFolderPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

Sets the folder path

setFolderPaths(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

Sets the folder path

setFontSize(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setFontSize(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setForceReflection(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setForegroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setForegroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setFramesSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setFullPath(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setFunction(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

setFunctions(StringPatternExtractionFunction.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation

setGaussianSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setGaussSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setGenerateCachePreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString

Sets generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation

Sets generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

Sets generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Sets the generated annotation type

setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm

setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

setGeneratedImageType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setGeneratedImageType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setGeneratedRows(int) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

setGeneratedType(ColumnContentType) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

setGenerateResultPreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

setGeneratorType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

setGetter(Supplier<Object>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the getter

setGetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setGradientRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the graph this algorithm is location in.

setGraphEditCursor(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setGridColor(Color) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setHasParameterSlot(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setHeight(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

setHeight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setHeightAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setHeightTolerance(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setHidden(boolean) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

setHistogramType(HistogramPlotData.HistogramType_) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setHyperstackReassignments(HyperstackDimensionPairParameter.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm

setIcon(JIPipeAlgorithmIconRef) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setIcon(ColorIcon) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

setIcon(ImageIcon) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon

setIconName(String) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

setId(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setId(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the ID

setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Sets the ID of the selected entry

setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Sets the ID of the selected entry

setId(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the ID

setIgnoreC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setIgnoreCustomParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setIgnoreImportedDataAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

setIgnoreImportedDataAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

setIgnoreInputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData

setIgnoreInputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm

setIgnoreInvalidSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setIgnoreMissingAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

setIgnoreMissingChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setIgnoreMissingColumns(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

setIgnoreMissingMetadata(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setIgnoreMissingSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setIgnoreReflectionParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

setIgnoreT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setIgnoreValidation(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

setIgnoreZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm

setImage(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

setImage(BufferedImage) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setImageFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setImageFiltersOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setImageId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

setImageIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource

setImageJUpdateSiteDependencies(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

setImageJUpdateSites(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

setImageNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setImageNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setImageTypeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setIn(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

setIncludeHoles(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setIndex(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

Sets the location

setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask

setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel

setIndexAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setIndexIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeRun

setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the JIPipeNodeInfo that describes this algorithm.

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench

setInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun

setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

setInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setInheritanceConversionsFromRaw(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setInput(I) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setInputIsEDM(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setInputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Seals/Unseals input slots

setInputSlots(List<JIPipeInputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the input slots

setInstallationPath(Path) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun

setInstanceGenerator(Function<JIPipeDynamicParameterCollection.UserParameterDefinition, JIPipeMutableParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

setInternalGradientRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

setInternalPath(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the internal path

setInternalStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the internal storage path relative to the output folder.

setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

setInvertThreshold(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

setIoMode(PathEditor.IOMode) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

setIoMode(PathEditor.IOMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setItemMargin(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the item margin and sends a RendererChangeEvent to all registered listeners.

setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon

setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon

setIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

setJIPipe(JIPipe) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

setKeepAnnotationColumns(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables

setKeepSameChannelCount(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal use only

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setKey(K) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

setKey(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setKey(String) - Method in class org.hkijena.jipipe.utils.MacroFlag

setKey(String) - Method in class org.hkijena.jipipe.utils.MacroSetting

setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setLabel(String) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot

setLabelFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData

setLabelFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData

setLabels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setLabels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setLargeVirtualDataTypesByDefault(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

setLastDataDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setLastDirectoryBy(String, Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

Sets the last directory according to the key

setLastIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setLastName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

setLastParametersDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setLastProjectsDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setLastSaves(PathList) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

setLayoutHelperEnabled(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

Enables or disables the layout helper

setLeft(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setLegendFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setLicense(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the license

setLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setLineColor(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setLineColorAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLineMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData

setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData

setLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setLineWidth(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setLineWidthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setLocal(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setLocalRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setLocationCAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLocations(Map<String, Map<String, Point>>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

setLocationTAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLocationWithin(String, Point, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the UI location of this algorithm within the specified compartment

setLocationXAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLocationYAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLocationZAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setLogarithmic(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

setLogicalOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

setLogLimit(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

SetLUTFromColorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut

SetLUTFromColorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

SetLUTFromColorAlgorithm(SetLUTFromColorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setMaintainer(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm

setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setMatrix(Matrix2DFloat) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

setMatrix(Matrix2DFloat) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

setMax_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setMaximizeWindows(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setMaximumBarWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the maximum bar width, which is specified as a percentage of the available space for all bars, and sends a RendererChangeEvent to all registered listeners.

setMaximumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setMaximumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setMaxInputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets maximum number of input slots

setMaxIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setMaxNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMaxOutputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets maximum number of output slots

setMaxParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMaxParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMaxSlope(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

setMaxThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

setMaxThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

setMeanVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the mean indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.

setMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm

setMedianVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that controls whether or not the median indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.

setMenuPath(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setMenuPath(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the menu path.

setMenuPathList(StringList) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setMergedColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment

Sets the metadata

setMetadata(JIPipeProjectMetadata) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets metadata

setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeMutableDependency

Sets the metadata

setMetadataFrom(JIPipeGraphEdge) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

setMetadataKeyFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setMetadataValueLengthLimit(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setMethod(ZProjectorAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setMethod(AutoThresholder.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

setMimeType(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange

setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange

setMin_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded

setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setMinimumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setMinimumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setMinIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setMinNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMinParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMinParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setMinScore(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

setMinThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

setMinThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

setMissingImageJSites(Set<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues

setMissingString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setMode(RemoveOutliersFilter2DAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setMode(TableToRectangularROIAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

setMode(StringPatternExtraction.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setMode(StringOrDouble.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setMode(JIPipeDataTypePicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

setMode(JIPipeNodeInfoPicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

setModel(ComboBoxModel<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setMultiChannelMode(HistogramGenerator.MultiChannelMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setMultiObjectMaximumBoundingBoxOverlap(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setMultiObjectScoreThreshold(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

setName(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo

setName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup

setName(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the name

setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setName(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn

setName(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

setName(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setName(String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

setNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setNativeValue(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

Sets the values from native values

setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

setNeighborhood(Neighborhood2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setNeverAskOnClosingTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

Adds a new instance of the content class Override this method for types that cannot be default-constructed

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter

setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter

setNewInstanceGenerator(Supplier<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

setNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

setnodeClass(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the algorithm class

setNodeId(String) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

setNodeInfo(JIPipeNodeInfoRef) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm

setNoLUT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setNormalize(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints

setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints

setNumberOfBins(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setNumScales(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setNumSlices(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack

setNumThreads(int) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setNumThreads(int) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setNumThreads(int) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog

setOffset(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack

setOnlyActiveImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI

setOnlyFirst(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm

setOpaque(boolean) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

setOpaque(boolean) - Method in class org.hkijena.jipipe.ui.components.FormPanel

setOpenAllSeries(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setOpenTabs(List<String>) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

setOperation(ImageCalculator2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

setOperation(Morphology.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setOperation(MorphologyBinary2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

setOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setOptionPanelContent(Component) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI

setOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setOrder(int) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent

setOriginalBorderSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

setOriginalSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

setOut(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity

setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm

setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm

setOutput(O) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setOutputDimension(HyperstackDimension) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setOutputDimension(HyperstackDimension) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

setOutputDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setOutputFiles(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputFolders(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputNode(JIPipeCompartmentOutput) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Sets the compartment output.

setOutputNonExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setOutputOverlaps(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

setOutputPath(Path) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

Sets the output path

setOutputPath(Path) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setOutputRoi(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

setOutputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Seals/Unseals output slots

setOutputSlots(List<JIPipeOutputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo

Sets the output slots

setOutputType(LocalMaxima2DAlgorithm.OutputType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setOutsideColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setOverlapFilter(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

setOverlapFilter(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setOverlapFilterMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm

setOverlapFilterMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm

setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setOverrideReferenceImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

setPadded(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

setParallelizationEnabled(boolean) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

User-defined parameter to control if parallelization is enabled

setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

setParameter(JIPipeParameterCollection, String, Object) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

Sets a parameter of a JIPipeParameterCollection and triggers the associated events

setParameter(P) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

setParameter(Object, boolean) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI

Sets the parameter value.

setParameterAnnotationsPrefix(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setParameterAnnotationsUseInternalNames(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings

setParameterData(Map<String, Object>) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

setParameterHolder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

For internal usage only

setParameterReferenceGroups(List<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters

setParameters(String) - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter

Sets arbitrary string data that can be used by the adapter for the conversion

setParameters(BiMap<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setParameters(int, int, int, int, int, double, int, double, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

Import values from GUI class before starting the analysis thread

setParameterTable(ParameterTable) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition

setParent(NodeGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

setParent(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

setParent(Component) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

setParentPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter

Sets the subfolder

setPassThrough(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

setPassword(PasswordParameter) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

setPassword(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter

setPath(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference

setPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

Sets the file name

setPath(String) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

setPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

setPath(Path) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

setPath(Path) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setPathMode(PathEditor.PathMode) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor

setPathMode(PathEditor.PathMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor

setPathName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString

Sets the subfolder

setPaths(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

Sets the folder path

setPercentile(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setPlaneIndex(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice

setPlaneNumberAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm

setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI

setPositionC(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionC(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setPositionT(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionT(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setPositionX(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionX(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setPositionY(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionY(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setPositionZ(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setPositionZ(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

setPrefix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setPreSmoothing(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setPreventUpdateSlots(boolean) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

setPreviewHeight(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

setPreviewSize(int) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings

setPreviewWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the priority

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setProcessorParameters(ConvertingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm

setProcessorParameters(IntegratingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm

setProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

setProgress(int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun

setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun

setProject(JIPipeProject) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment

Sets the project.

setProject(JIPipeProject) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters

setProjectAllHyperstackTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setProjectFile(Path) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

setProjectId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

setProjectIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource

setProjectInfoGeneratesPreview(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setProjectNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setProjectTemplate(ProjectsSettings.ProjectTemplateEnum) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setPropertyPanel(Component) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Sets the component displayed in the right property panel

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox

setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setRadiusIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox

setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

setRankingFunction(RankingFunction<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setRatio(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setRealTimeRunDelay(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setRealTimeRunEnabled(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setRecalibrate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

setRecentJsonExtensionProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRecentProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm

setRectangles(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm

setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setReferenceColumns(Set<String>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

Sets the reference columns An empty list merges all data into one batch Setting it to null splits all data into a separate batch

setReferenceColumns(JIPipeColumnGrouping, StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

setReferenceSlice(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices

setRegexString(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setRegistry(JIPipe) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

setRegistry(JIPipe) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension

setRegistry(JIPipe) - Method in interface org.hkijena.jipipe.JIPipeJavaExtension

Sets the registry

setRegistry(JIPipe) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the registry instance

setRelativeLocation(Path) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setRemoveColumn(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm

setRemoveExtensions(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

setRemoveLut(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setRemoveLut(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setRemoveOutputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable

setRenamingEntries(StringQueryExpressionAndStringPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm

setRenamingEntries(StringQueryExpressionAndStringPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm

setRenamingEntries(StringQueryExpressionAndStringQueryPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm

setRenderer(ListCellRenderer<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setReplaceIfExists(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm

setReport(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI

setResolution(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setResourcePath(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setRestoreTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings

setRestrictToROI(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setRight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setRoi(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

SetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

Instantiates a new node type.

SetRoiImageAlgorithm(SetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm

Instantiates a new node type.

setRoiName(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm

setRoiName(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm

setRollingBallRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

setRotateTemplate(IntegerRange) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setRotation(double) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

setRotationDirection(TransformRotate2DAlgorithm.RotationMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

setRotations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

setRotationStep(double) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

setRowGenerator(Supplier<List<Object>>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

setRowList(List<JIPipeExportedDataTable.Row>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets list of rows

setRowMergingStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm

setRowNormalization(TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm

setRows(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setRows(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm

setRows(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setSavePath(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings

setSaveRGBWithImageJ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

setSaveROI(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant

setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar

setScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage

setScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

setScaleFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setScaleFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setScales(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setSecondColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm

setSelectColorPrompt(String) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

setSelectedCalibration(ImageJCalibrationMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

setSelectedColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton

setSelectedDataTypes(Set<JIPipeDataInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

setSelectedInfo(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

setSelectedInfos(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

setSelectedItem(T) - Method in class org.hkijena.jipipe.ui.components.SearchBox

setSelectedNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog

setSelectedTab(String) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata

setSelection(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.MultiSelectionModel

setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.SingleSelectionModel

setSeparateChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setSeparatorString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setSeriesToImport(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setServer(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

setSetter(Function<Object, Boolean>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the setter

setSetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the short key

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setShowIntroduction(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setShowIntroductionTour(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setShowParameterSearchBar(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setShowProjectInfo(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma1z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d

setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigma2z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d

setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSigmaZ(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

setSilent(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setSilent(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setSkipExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings

setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings

setSkipInvalid(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath

setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator

setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator

setSlicesToImport(IntegerRange) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setSlicingMode(FrangiVesselnessFeatures.SlicingMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

setSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

setSlotName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

Sets the slot name

setSlotName(String) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm

setSlots(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder

setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

setSortedStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setSortFilesNumerically(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setSortOrderList(MeasurementColumnSortOrder.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the parameter source

setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setSourceDocumentation(JIPipeParameterCollection, JIPipeDefaultDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree

Sets source documentation

setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm

setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm

setSplitAfterwards(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm

setSplitAtJunctions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setSplitByInputSlots(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter

setSplitC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setSplitChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitChannels(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setSplitCharacter(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setSplitFocalPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitFocalPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setSplitPickedIndex(int) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

setSplitSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setSplitT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setSplitTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSplitTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setSplitZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings

setStackOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setStackOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setStackSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setStartAngleDegrees(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial

setStartSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d

setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStartZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d

setStatisticsParameters(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D

setStitchTiles(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setStitchTiles(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setStopSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

setStoragePath(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

Sets storage path that is used during running the algorithm for saving the results

setStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the storage path.

setStoredAsResource(boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate

setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings

setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings

setStrict(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setStrictMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setStringValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders

setSubPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter

Sets the subfolder

setSubtract(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm

setSuffix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

setSwapDimensions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setSwapDimensions(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setSwitchPanningDirection(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings

setT(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

setTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

setTableModel(ResultsTableData) - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor

setTables(ResultsTableDataList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm

setTagAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setTagAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm

setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm

setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm

setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm

setTempDirectory(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings

setTempDirectory(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

setTemplateDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

setTemplateMatchingMethod(TemplateMatchingMethod) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setTemporaryDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader

Sets the document to some temporary one without changing the reference to the main document

setTemporaryDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader

Sets the document to some temporary one without changing the reference to the main document

setText(String) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField

setText(String) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

setText(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

setText(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor

setTheme(JIPipeUITheme) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setThreadPool(JIPipeFixedThreadPool) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

Sets the thread pool.

setThreads(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

setThreshold(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold

setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

setThreshold(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

setThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm

setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

setThreshold_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded

setTitle(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Sets the plot title

setTitle(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab

setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter

setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter

setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow

setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter

setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile

setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm

setTitleFilterExpression(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI

setTitleFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setTo(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

setTo(JIPipeSlotConfiguration) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Makes this slot configuration equivalent to the provided one

setTo2ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

setTo2ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setTo3ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

setTo3ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

setToAskOnClose(JFrame, String, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

Installs an event to the window that asks the user before the window is closes

setToAskOnClose(JFrame, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils

Installs an event to the window that asks the user before the window is closes

SetToColorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

SetToColorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm

SetToColorAlgorithm(SetToColorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript

setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

setTop(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

SetToValueAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

SetToValueAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm

SetToValueAlgorithm(SetToValueAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm

setTrack(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d

setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d

setTransformation(ApplyMath2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

setTransformation(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

setTransformation(ApplyTransform2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm

setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d

setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTranslateZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d

setTree(JIPipeParameterTree) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

setTrueDataType(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row

setTrySolveJunctions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

setUiExcludedSubParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setUiHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the UI order

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

setUiOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setUniqueStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

setup() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun

Opens the necessary dialogs

setup() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun

Opens the necessary dialogs

setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata

setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

setUpdateSitesToAddAndActivate(List<UpdateSite>) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

setUploadAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

setUploadedAnnotationsFilter(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

SetupPanel - Class in org.hkijena.jipipe.installer.linux.ui

SetupPanel(MainWindow) - Constructor for class org.hkijena.jipipe.installer.linux.ui.SetupPanel

setUrl(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

setUrls(StringList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource

setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setUseBioFormats(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings

setUseExactValue(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter

setUseNativeChooser(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings

setUseNaturalSortOrder(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

setUseOutlinePaintForWhiskers(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the flag that, if true, causes the whiskers to be drawn using the series outline paint, and sends a RendererChangeEvent to all registered listeners.

setUserName(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials

setUserSelectedMethod(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold

setValidateImageJDependencies(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setValidateNodeTypes(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings

setValidateOnSave(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings

setValue(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

setValue(String, T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection

Sets a parameter value

setValue(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm

setValue(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

setValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

setValue(V) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

setValue(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter

setValue(String) - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource

setValue(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

setValue(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

setValue(String) - Method in class org.hkijena.jipipe.utils.MacroSetting

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

setValueAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setValueAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData

setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData

setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar

setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar

setValueReplacement(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

setValues(Set<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter

setValueToReplace(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond

setVersion(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension

Sets the version

setViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

setVirtual(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo

setVirtualCache(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

setVirtualMode(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder

Sets the visibility

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess

Sets the visibility

setVisibility(String, boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets the visibility of parameter with specified key

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node

setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess

setVisible(boolean) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

setVisible(boolean) - Method in class org.hkijena.jipipe.utils.MacroFlag

setVisibleCompartments(Set<String>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the list of additional compartments this algorithm is visible in.

setVisibleParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities

Sets visible parameters

setWebsite(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata

Sets the website

setWhiskerWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer

Sets the width of the whiskers as a fraction of the bar width and sends a RendererChangeEvent to all registered listeners.

setWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

setWidth(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin

setWidthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm

setWithLegend(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

setWithMetadataKeys(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

setWithNonMaximaSuppression(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm

setWithParents(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory

Sets the subfolder

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject

Sets the folder where the project is currently working in.

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Sets the current work directory of this algorithm.

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource

setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource

setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents

setWrappedIcon(ImageIcon) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setxAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setxAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setXyAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm

setXyAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm

setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer

setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setyAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setyAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

setZ(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

setzAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

setZoom(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas

setZoom(double) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

SHAPE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

Sheet(String, Icon, String, Icon, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet

Creates a new instance

ShortParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Short

ShortParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo

ShortPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives

Info for Short

ShortPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo

ShortRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators

Generates Short

ShortRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ShortRangeParameterGenerator

Creates a new instance

shouldFillGap(int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

shouldPadTabRun(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

shouldRotateTabRuns(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation

Imports the data and shows it

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay

show(JIPipeWorkbench, JIPipeCacheSlotDataSource, String) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation

show(JIPipeWorkbench, JIPipeCacheSlotDataSource, String) - Static method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation

show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation

showConnectionErrorMessage(Component, JIPipeDataSlot, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.utils.UIUtils

showCurrentFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

showDialog(Component, String, Set<ExpressionParameterVariable>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI

showDialog(Component) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList

showDialog(Component, ExpressionEvaluator) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList

showDialog(Component, Set<ExpressionParameterVariable>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList

showDialog(Component, JIPipeGraphHistory, JIPipeGraphNode, JIPipeSlotType) - Static method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeDynamicParameterCollection) - Static method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeGraphHistory, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel

Shows a dialog for adding slots

showDialog(Component, JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker

Shows a dialog to pick traits

showDialog(Component, String, Set<String>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog

Picks an icon name using a dialog

showDialog(Component, JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker

Shows a dialog to pick traits

showDialog(Component, Set<JIPipeGraphNode>, JIPipeGraphNode, String) - Static method in class org.hkijena.jipipe.ui.components.PickNodeDialog

Shows a dialog for selecting an algorithm

showDialog(Component, JIPipeWorkbench, Class<? extends JIPipeParameterGeneratorUI>) - Static method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI

Shows a dialog that allows the user to setup the generator

showDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Static method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

Shows the dialog

showImage(ImagePlus, String) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

Opens the image in a new frame

showPickerDialog(Component, JIPipeParameterTree, String) - Static method in class org.hkijena.jipipe.ui.components.ParameterTreeUI

Picks a node or parameter

showSlide(String) - Method in class org.hkijena.jipipe.utils.DotSlideshow

showSplash(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen

shutdown() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool

Forces the thread pool to shut down

SignColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a floor function

SignColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation

SimpleFileAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Generates annotations from filenames

SimpleFileAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

New instance

SimpleFileAnnotationGenerator(SimpleFileAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator

Copies the algorithm

SimpleFolderAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that generates annotations from folder names

SimpleFolderAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Creates a new instance

SimpleFolderAnnotationGenerator(SimpleFolderAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator

Copies the algorithm

SimpleIteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python

An algorithm that allows to run Python code

SimpleIteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

Creates a new instance

SimpleIteratingPythonScriptAlgorithm(SimpleIteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm

Creates a copy

simpleOMEExport(ImagePlus, Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

Copy of the run method in Exporter, as the plugin code really depends on some UI interaction We also simplified the code, as JIPipe outputs very standard files

SimplePathAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms

Algorithm that generates annotations from folder names

SimplePathAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

Creates a new instance

SimplePathAnnotationGenerator(SimplePathAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator

Copies the algorithm

SineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

SineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation

SingleExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

ExpressionParameterVariableSource that contains exactly one variable.

SingleExpressionParameterVariableSource(String, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource

SingleExpressionParameterVariableSource(ExpressionParameterVariable) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource

SingleFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater

Opened when selecting one file

SingleFileSelectionPanel(JIPipeWorkbench, ManagerUI, FileObject) - Constructor for class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel

SingleImageJAlgorithmRun - Class in org.hkijena.jipipe.api.compat

Settings class used for a single algorithm run

SingleImageJAlgorithmRun(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun

SingleImageJAlgorithmRun.Serializer - Class in org.hkijena.jipipe.api.compat

Serializes the run

SingleSelectionModel - Class in org.hkijena.jipipe.ui.components

Selection model for single selections

SingleSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.SingleSelectionModel

size() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

SIZE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

SLOT_PARAMETERS - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SlotConfigurationHistorySnapshot - Class in org.hkijena.jipipe.api.history

SlotConfigurationHistorySnapshot(JIPipeGraphNode, String) - Constructor for class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

SlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections

Parameter that holds a value for each data slot

SlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Creates a new instance

slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

SlotsChangedEvent(JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.SlotsChangedEvent

Creates a new instance

SobelEdgeDetectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge

Wrapper around ImageProcessor

SobelEdgeDetectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

Instantiates a new node type.

SobelEdgeDetectorAlgorithm(SobelEdgeDetectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

Instantiates a new node type.

SortAndExtractRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SortAndExtractRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

Instantiates a new node type.

SortAndExtractRoiByStatisticsAlgorithm(SortAndExtractRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm

Instantiates a new node type.

SortAscendingArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

SortAscendingArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction

SortAscendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

SortAscendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation

SortDescendingArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

SortDescendingArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction

SortDescendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

SortDescendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation

SortOrder - Enum in org.hkijena.jipipe.extensions.parameters.util

Sort orders

SortRowsAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms

SortRowsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

SortRowsAlgorithm(SortRowsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm

SortTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SortTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

Creates a new instance

SortTableAlgorithm(SortTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm

Creates a copy

SplashScreen - Class in org.hkijena.jipipe.ui.components

SplashScreen() - Constructor for class org.hkijena.jipipe.ui.components.SplashScreen

splitAll() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Splits all ShapeRoi that consist of multiple sub-Roi into their individual sub-Roi.

splitBy(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Splits this table into multiple tables according to an internal or external column

SplitByAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that splits the input data by a specified annotation

SplitByAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

SplitByAnnotation(SplitByAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation

Copies the algorithm

SplitByAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms

Algorithm that annotates all data with the same annotation

SplitByAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

SplitByAnnotationScript(SplitByAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript

Copies the algorithm

SplitChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

Wrapper around ChannelArranger

SplitChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

Instantiates a new node type.

SplitChannelsAlgorithm(SplitChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

Creates a copy

SplitRGBChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color

SplitRGBChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm

SplitRGBChannelsAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm

SplitRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

SplitRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

Instantiates a new node type.

SplitRoiAlgorithm(SplitRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm

Instantiates a new node type.

SplitRoiConnectedComponentsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

SplitRoiConnectedComponentsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

SplitRoiConnectedComponentsAlgorithm(SplitRoiConnectedComponentsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm

SplitRoiConnectedComponentsAlgorithm.DimensionOperation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

SplitTableByColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SplitTableByColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

Creates a new instance

SplitTableByColumnsAlgorithm(SplitTableByColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm

Creates a copy

SplitTableIntoColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that integrates columns

SplitTableIntoColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

Creates a new instance

SplitTableIntoColumnsAlgorithm(SplitTableIntoColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm

Creates a copy

SqrtColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a square root function

SqrtColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation

SquareColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a square function

SquareColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation

StackedBarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Generates a bar category plot

StackedBarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

Creates a new instance

StackedBarCategoryPlotData(StackedBarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData

Creates a copy

StackInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

Instantiates a new node type.

StackInverterAlgorithm(StackInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

Instantiates a new node type.

StackMergerAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackMergerAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

Instantiates a new node type.

StackMergerAlgorithm(StackMergerAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

Instantiates a new node type.

StackSplitterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ChannelArranger

StackSplitterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

Instantiates a new node type.

StackSplitterAlgorithm(StackSplitterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

Creates a copy

StackTo2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ImageProcessor

StackTo2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

Instantiates a new node type.

StackTo2DAlgorithm(StackTo2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

Instantiates a new node type.

StackToMontageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Implementation of MontageMaker

StackToMontageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

StackToMontageAlgorithm(StackToMontageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm

stageActivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

STANDARD_DATA_OPERATIONS - Static variable in class org.hkijena.jipipe.extensions.plots.PlotsExtension

StandardParametersExtension - Class in org.hkijena.jipipe.extensions.parameters

Provides some standard parameters

StandardParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension

StandardSettingsExtension - Class in org.hkijena.jipipe.extensions.settings

Extension that provides all JIPipe included settings sheets

StandardSettingsExtension() - Constructor for class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension

start() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer

start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer

startAndJoin(Thread[]) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

Start all given threads and wait on each of them until all are done.

startRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI

Starts the run

startRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI

Starts the run

startTransform() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle

StateSerializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer

StatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for statistical plots.

StatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

Creates a new instance

StatisticalCategoryPlotData(StatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData

Creates a copy

StatisticsAverageIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the average

StatisticsAverageIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation

StatisticsCountIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the number of rows

StatisticsCountIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation

StatisticsCountNonZeroIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements counting non-zero elements

StatisticsCountNonZeroIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation

StatisticsCumulativeSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the cumulative sum Y_0=X_0; Y_i=Y_{i-1}+X_i

StatisticsCumulativeSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation

StatisticsGeometricMeanIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the geometric mean

StatisticsGeometricMeanIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation

StatisticsKurtosisIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the kurtosis

StatisticsKurtosisIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation

StatisticsMaxIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the max value

StatisticsMaxIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation

StatisticsMedianIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the median value

StatisticsMedianIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation

StatisticsMinIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the min value

StatisticsMinIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation

StatisticsSkewnessIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the skewness

StatisticsSkewnessIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation

StatisticsStandardDeviationIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the standard deviation

StatisticsStandardDeviationIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation

StatisticsVarianceIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the variance

StatisticsVarianceIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation

StatisticsWeightedSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the weighted sum sum_{i=1,2,...}

StatisticsWeightedSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation

StatusUpdatedEvent(JIPipeProgressInfo, int, int, String) - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent

stop() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon

store(JIPipeGraphNode, JIPipeProjectCacheState, JIPipeDataSlot, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache

Stores data into the cache

StringAndStringPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames an integer into another integer

StringAndStringPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter

Creates a new instance

StringAndStringPairParameter(StringAndStringPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter

Creates a copy

StringAndStringPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringAndStringPairParameter

StringArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables

Converts a column to a table

StringArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter

StringArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

TableColumn that contains doubles.

StringArrayTableColumn(String[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn

Creates a new instance

StringData - Class in org.hkijena.jipipe.extensions.strings

A data type that contains a string

StringData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData

StringData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData

StringDataConverter - Class in org.hkijena.jipipe.extensions.strings

StringDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.strings.StringDataConverter

StringDefinitionDataSource - Class in org.hkijena.jipipe.extensions.strings.datasources

StringDefinitionDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource

StringDefinitionDataSource(StringDefinitionDataSource) - Constructor for class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource

StringJoinFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

StringJoinFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction

StringList - Class in org.hkijena.jipipe.extensions.parameters.primitives

A list of String

StringList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList

Creates a new empty list

StringList(StringList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList

Creates a copy

StringMapQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

StringMapQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

StringMapQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

StringMapQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

StringOrDouble - Class in org.hkijena.jipipe.extensions.parameters.primitives

Can either filter a string or a double

StringOrDouble() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Creates a new instance

StringOrDouble(StringOrDouble) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble

Copies the object

StringOrDouble.List - Class in org.hkijena.jipipe.extensions.parameters.primitives

A collection of multiple StringOrDouble The filters are connected via "OR"

StringOrDouble.Mode - Enum in org.hkijena.jipipe.extensions.parameters.primitives

Modes are that a column is picked or one is generated

StringOrDoubleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

A parameter editor UI for StringOrDouble

StringOrDoubleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI

StringParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives

Parameter editor for String

StringParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI

StringParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives

Settings for String parameters

StringPatternExtraction - Class in org.hkijena.jipipe.extensions.parameters.patterns

A parameter that extracts a pattern from a string

StringPatternExtraction() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

Creates a new instance

StringPatternExtraction(StringPatternExtraction) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

Creates a copy

StringPatternExtraction.List - Class in org.hkijena.jipipe.extensions.parameters.patterns

A collection of multiple StringPatternExtraction

StringPatternExtraction.Mode - Enum in org.hkijena.jipipe.extensions.parameters.patterns

Available modes

StringPatternExtractionFunction - Class in org.hkijena.jipipe.extensions.parameters.functions

A function entry that applies pattern extraction to an String

StringPatternExtractionFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction

Creates a new instance

StringPatternExtractionFunction(StringPatternExtractionFunction) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction

Creates a copy

StringPatternExtractionFunction.List - Class in org.hkijena.jipipe.extensions.parameters.functions

List of StringPatternExtractionFunction

StringPatternExtractionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.patterns

Editor for StringPatternExtraction

StringPatternExtractionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI

StringQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

Expression for querying strings

StringQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

StringQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

StringQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

StringQueryExpressionAndSortOrderPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A pair of StringQueryExpression and SortOrder

StringQueryExpressionAndSortOrderPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter

Creates a new instance

StringQueryExpressionAndSortOrderPairParameter(StringQueryExpressionAndSortOrderPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter

Creates a copy

StringQueryExpressionAndSortOrderPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringQueryExpressionAndSortOrderPairParameter

StringQueryExpressionAndStringPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames a matching string into another string

StringQueryExpressionAndStringPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter

Creates a new instance

StringQueryExpressionAndStringPairParameter(StringQueryExpressionAndStringPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter

Creates a copy

StringQueryExpressionAndStringPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringQueryExpressionAndStringPairParameter

StringQueryExpressionAndStringQueryPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs

A parameter that renames a matching string into another string

StringQueryExpressionAndStringQueryPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter

Creates a new instance

StringQueryExpressionAndStringQueryPairParameter(StringQueryExpressionAndStringQueryPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter

Creates a copy

StringQueryExpressionAndStringQueryPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs

A collection of multiple StringQueryExpressionAndStringQueryPairParameter

StringQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

Variables for querying strings

StringQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpressionVariableSource

StringRegexReplaceFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

StringRegexReplaceFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction

StringReplaceFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

StringReplaceFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction

StringsExtension - Class in org.hkijena.jipipe.extensions.strings

Provides data types dor handling strings

StringsExtension() - Constructor for class org.hkijena.jipipe.extensions.strings.StringsExtension

StringSplitFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

StringSplitFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction

StringUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils

Utilities for strings

StringUtils - Class in org.hkijena.jipipe.utils

Utilities for strings

STROKE_DEFAULT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_HIGHLIGHT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_MARQUEE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_SELECTION - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

STROKE_UNIT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

styleText(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField

styleText(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.FancyTextField

SUBCONTROL_BACKGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

SubtractionFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

SubtractionFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator

SugiyamaGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout

Applies auto-layout according to Sugiyama et al.

SugiyamaGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod

SumIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating

Implements calculating the sum

SumIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation

supportsImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns true if the ImageJ data type is supported

supportsJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry

Returns true if the JIPipe data type is supported

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm

supportsParallelization() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported.

supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

supportsParallelization() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm

switchToContent(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Switches to the provided content

switchToLastTab() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane

Switches the the last tab.

switchToMode(ExpressionBuilderParameterUI.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI

T

TAB_APPLICATION_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_COMPARTMENT_EDITOR - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_INTRODUCTION - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_LICENSE - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PLUGIN_MANAGER - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PLUGIN_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_PROJECT_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

TAB_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

tabAreaBackground - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

TabbedPaneLayout() - Constructor for class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout

TableCellExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

TableCellExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellExpressionParameterVariableSource

TableCellValueExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

TableCellValueExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueExpressionParameterVariableSource

TableCellValueQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions

Expression for querying strings

TableCellValueQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression

TableCellValueQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression

TableCellValueQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression

TableColumn - Interface in org.hkijena.jipipe.extensions.tables.datatypes

An JIPipeData type that represents a column.

TableColumnConversionParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

Enum-like parameter that allows the selection of a ConvertingColumnOperation.

TableColumnConversionParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Creates a new instance

TableColumnConversionParameter(TableColumnConversionParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter

Creates a copy

TableColumnGeneratorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

A parameter that allows the user to setup a table column generator

TableColumnGeneratorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

Creates a new instance

TableColumnGeneratorParameter(TableColumnGeneratorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter

Creates a copy

TableColumnGeneratorParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

A parameter editor UI that works for all enumerations

TableColumnGeneratorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI

TableColumnGeneratorProcessor - Class in org.hkijena.jipipe.extensions.tables.parameters.processors

Processor-like parameter that maps a column generator to a string

TableColumnGeneratorProcessor() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor

Creates a new instance

TableColumnGeneratorProcessor(TableColumnGeneratorProcessor) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor

Creates a copy

TableColumnGeneratorProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections

TableColumnGeneratorProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList

Creates a new instance

TableColumnGeneratorProcessorParameterList(TableColumnGeneratorProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList

Creates a copy

TableColumnIntegrationParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums

Enum-like parameter that allows the selection of a IntegratingColumnOperation.

TableColumnIntegrationParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Creates a new instance

TableColumnIntegrationParameter(TableColumnIntegrationParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter

Creates a copy

TableColumnNormalization - Enum in org.hkijena.jipipe.extensions.tables.datatypes

TableColumnReference - Class in org.hkijena.jipipe.extensions.tables

A table column that references a column within a ResultsTableData

TableColumnReference(ResultsTableData, int) - Constructor for class org.hkijena.jipipe.extensions.tables.TableColumnReference

TableColumnSourceExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions

Parameter that acts as source (via matching a column) or a generator

TableColumnSourceExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

TableColumnSourceExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

TableColumnSourceExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter

tableFromOMERO(TableData) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

TableNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories

TableNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory

TablesExtension - Class in org.hkijena.jipipe.extensions.tables

Standard set of table operations

TablesExtension() - Constructor for class org.hkijena.jipipe.extensions.tables.TablesExtension

TablesFromScript - Class in org.hkijena.jipipe.extensions.tables.algorithms

Algorithm that annotates all data with the same annotation

TablesFromScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

TablesFromScript(TablesFromScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript

Copies the algorithm

TableToCircularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

TableToCircularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

Instantiates a new node type.

TableToCircularROIAlgorithm(TableToCircularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm

Creates a copy

tableToOMERO(ResultsTableData) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils

TableToRectangularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

TableToRectangularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

Instantiates a new node type.

TableToRectangularROIAlgorithm(TableToRectangularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm

Creates a copy

TableToRectangularROIAlgorithm.Anchor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Available anchors

TableToRectangularROIAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

TableUtils - Class in org.hkijena.jipipe.utils

Utilities for TableModel

TangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Applies a sine function

TangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation

TemplateMatchingMethod - Enum in org.hkijena.jipipe.extensions.ijmultitemplatematching

TemplateProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components

Renders a recent project

TemplateProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer

TemporaryFileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

TemporaryFileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

TemporaryFileDataSource(TemporaryFileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource

TemporaryFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources

TemporaryFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

TemporaryFolderDataSource(TemporaryFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource

test(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression

Evaluates the expression as boolean

test(String, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionEvaluator

Returns the boolean evaluated expression.

test(StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter

Runs the expression and returns the boolean result.

test(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression

Tests if the key value pair is queried

test(Path) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

Returns true if the query matches the string

test(Map<String, String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

Tests if the query matches the key value pairs

test(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression

Tests if the query matches the keys=values.

test(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

Returns true if the query matches the string

test(ResultsTableData, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression

Returns true if the table cell is accepted by the expression

test(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField

testAnyOf(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression

Returns true of one of the strings matches the query.

testAnyOf(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression

Returns true of one of the strings matches the query.

TEXTAREA_BACKGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

ThrobberIcon - Class in org.hkijena.jipipe.ui.components

ThrobberIcon(Component, ImageIcon, int, double) - Constructor for class org.hkijena.jipipe.ui.components.ThrobberIcon

thumbMoved(int, float) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

thumbMoved(int, float) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

ThumbRenderer() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer

thumbSelected(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor

thumbSelected(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

tighten(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange

Modifies the center points, so they are closer together.

TO_2D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert higher-dimensional data to their 2D counterparts

TO_3D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules convert data to their 3D counterparts

TO_COLOR_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into colored images

TO_GRAYSCALE32F_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into colored images

TO_GRAYSCALE_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension

Conversion rules that convert color types into greyscale

ToBooleanFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ToBooleanFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction

toDummySlot(JIPipeDataSlotInfo, JIPipeGraphNode, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch

Creates a new dummy slot that contains the data of one input slot and the annotations of this batch

toHtmlElement(JIPipeDependency) - Static method in interface org.hkijena.jipipe.JIPipeDependency

Exports the dependency to an HTML element (without the root tag)

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

toJson(JsonGenerator) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration

Saves this configuration to JSON.

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.JIPipeProject

Writes the project to JSON

toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Saves this algorithm to JSON.

ToJsonFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ToJsonFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToJsonFunction

toJsonString(Object) - Static method in class org.hkijena.jipipe.utils.JsonUtils

tokenize(String, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

tokenize(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

toMask(Margin, boolean, boolean, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

Generates a mask image from pure ROI data.

ToNumberFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ToNumberFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction

ToNumericColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

ToNumericColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation

ToolsExtension - Class in org.hkijena.jipipe.extensions.tools

Extension containing some additional tools

ToolsExtension() - Constructor for class org.hkijena.jipipe.extensions.tools.ToolsExtension

TooltipUtils - Class in org.hkijena.jipipe.utils

Utilities that generate tooltips or other text from JIPipe data data structures

toParameterString(Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils

Converts a list of parameters into a space-delimited

toPath() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

toPython() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

Converts this table into its equivalent Python form (as dictionary of columns)

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation

toString() - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo

toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot

toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List

toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata

toString() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState

toString() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message

toString() - Method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

toString() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask

toString() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData

toString() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData

toString() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D

toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData

toString() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension

toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex

toString() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData

toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData

toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData

toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData

toString() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter

toString() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D

toString() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter

toString() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter

toString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef

toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef

toString() - Method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries

toString() - Method in class org.hkijena.jipipe.extensions.strings.StringData

toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData

toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData

toString() - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization

toString() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus

toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge

toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node

toString() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

toString() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode

toString() - Method in class org.hkijena.jipipe.utils.MacroFlag

toString() - Method in class org.hkijena.jipipe.utils.MacroSetting

ToStringColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting

Sorts the items ascending

ToStringColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation

ToStringFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

ToStringFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction

toUpdateSite() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency

toValue(String, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator

TrackRenderer(ImageViewerPanelDisplayRangeControl) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer

TransformCrop2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformCrop2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

Instantiates a new node type.

TransformCrop2DAlgorithm(TransformCrop2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm

Instantiates a new node type.

TransformEqualCanvasSize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

TransformEqualCanvasSize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

TransformEqualCanvasSize2DAlgorithm(TransformEqualCanvasSize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm

TransformExpandCanvas2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

TransformExpandCanvas2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

TransformExpandCanvas2DAlgorithm(TransformExpandCanvas2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm

TransformFlip2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformFlip2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

Instantiates a new node type.

TransformFlip2DAlgorithm(TransformFlip2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm

Instantiates a new node type.

TransformFlip2DAlgorithm.FlipMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Available ways to flip an image

TransformRotate2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformRotate2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

Instantiates a new node type.

TransformRotate2DAlgorithm(TransformRotate2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm

Instantiates a new node type.

TransformRotate2DAlgorithm.RotationMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Available ways to flip an image

TransformRotateFree2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformRotateFree2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

Instantiates a new node type.

TransformRotateFree2DAlgorithm(TransformRotateFree2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm

TransformScale2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformScale2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

Instantiates a new node type.

TransformScale2DAlgorithm(TransformScale2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm

Instantiates a new node type.

TransformScale3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform

Wrapper around ImageProcessor

TransformScale3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

Instantiates a new node type.

TransformScale3DAlgorithm(TransformScale3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm

Instantiates a new node type.

TRANSPARENT - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme

TRANSPARENT - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme

TRANSPARENT - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme

traverse() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Traverses the graph in topological order.

traverseSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph

Traverses the graph in topological order.

tryAutoRun(boolean, JIPipeTestBenchSettings, Consumer<JIPipeTestBench>) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI

Attempts to setup and run the quick run automatically and run a function when finished

tryDequeue() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue

Attempts to run a scheduled run

tryDequeue() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue

Attempts to run a scheduled run

tryGetIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange

Generates the list of integers based on the value.

trySetInputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets the input slot order.

trySetOutputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration

Sets the output slot order.

U

UI_PADDING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

UI_PADDING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

UI_PADDING - Static variable in class org.hkijena.jipipe.utils.UIUtils

uiImportParameterFromGraph(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters

UIPlotDataSeriesColumnEnum - Class in org.hkijena.jipipe.extensions.plots.parameters

Parameter that contains one selected PlotDataSeries item.

UIPlotDataSeriesColumnEnum() - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnum

UIPlotDataSeriesColumnEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.plots.parameters

Works for TableColumn.

UIPlotDataSeriesColumnEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI

UIUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils

Utils for UI

UIUtils() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils

UIUtils - Class in org.hkijena.jipipe.utils

Utils for UI

UIUtils() - Constructor for class org.hkijena.jipipe.utils.UIUtils

UltimateErodedPoints2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

UltimateErodedPoints2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

Instantiates a new node type.

UltimateErodedPoints2DAlgorithm(UltimateErodedPoints2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm

Instantiates a new node type.

UndefinedExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions.variables

Used to indicate that the list of variables are not known

UndefinedExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.variables.UndefinedExpressionParameterVariableSource

undo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot

undo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot

Reverts the operation

undo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory

Reverts the last operation

undo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot

undo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot

unpackToNodeGroup(JsonAlgorithm) - Static method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm

Replaces the targeted JsonAlgorithm by a NodeGroup

UnreferencedRoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnreferencedRoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

Instantiates a new node type.

UnreferencedRoiToMaskAlgorithm(UnreferencedRoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm

Instantiates a new node type.

UnreferencedRoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnreferencedRoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

Instantiates a new node type.

UnreferencedRoiToRGBAlgorithm(UnreferencedRoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm

Instantiates a new node type.

unregister(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry

Removes a node from the registry

UnsatisfiedDependenciesDialog - Class in org.hkijena.jipipe.ui.project

Shown when unsatisfied dependencies are found

UnsatisfiedDependenciesDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Constructor for class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog

UnsetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi

Wrapper around RoiManager

UnsetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

Instantiates a new node type.

UnsetRoiImageAlgorithm(UnsetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm

Instantiates a new node type.

unzip(Path, Path, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>) - Static method in class org.hkijena.jipipe.installer.linux.api.ZipUtils

update(IObservable, ImportEvent) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROUploadToJIPipeLogger

update(Graphics, JComponent) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Called when the algorithm was enabled/disabled

updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Updates the slots

updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateAnalyzer() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter

Sends the settings to Analyzer

UpdateCacheNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu

UpdateCacheNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction

updateChartProperties(JFreeChart) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData

Sets properties of charts

updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies

updateConflictsMessage() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager

updateFont() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel

updateGraphNodeSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Synchronizes the slots with the slot definition

updateGroupSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm

Updates the slots from the wrapped graph

updateMappings() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Called when the algorithm name was updated

updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateNavigation() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

Updates the navigation list

updateRegistrationTasks() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension

Tries to register more extensions waiting for dependencies

updateRenderedPreviews() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable

updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel

updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer

updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer

updateSelection() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI

updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter

updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI

updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI

updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI

updateSeriesList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder

Updates the column parameters

UpdateSiteListUI - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteListUI(JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI

UpdateSiteListUI.Ranking - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteUI - Class in org.hkijena.jipipe.ui.ijupdater

UpdateSiteUI(UpdateSiteListUI, UpdateSite) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteUI

updateSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI

Recalculates the UI size

updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI

updateSliders() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl

updateSlotInheritance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

Updates the inheritance: Passes traits from input slots to output slots while modifying the results depending on the trait configuration.

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection

updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection

Method that adds missing entries, or removes invalid entries based on the algorithm's slot configuration

updateStatus() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI

Updates the UI status

updateStatus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI

Updates the UI status

UploadOMEROImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms

UploadOMEROImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm

UploadOMEROTableAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms

UploadOMEROTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm

UploadOMEROTableAlgorithm(UploadOMEROTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm

uploadSliceToCanvas() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel

userCanCreate() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

userCanCreate() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if nodes of this category can be created by users

userCanDelete() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory

userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory

userCanDelete() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory

Returns if nodes of this category can be deleted by users

UserFriendlyErrorUI - Class in org.hkijena.jipipe.ui.components

Displays exceptions in a user-friendly way.

UserFriendlyErrorUI(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI

UserFriendlyErrorUI.Entry - Class in org.hkijena.jipipe.ui.components

Entry to be displayed

UserFriendlyErrorUI.EntryUI - Class in org.hkijena.jipipe.ui.components

UI for UserFriendlyErrorUI.Entry

UserFriendlyException - Interface in org.hkijena.jipipe.api.exceptions

Error/Exception that contains user-friendly information

UserFriendlyNullPointerException - Exception in org.hkijena.jipipe.api.exceptions

A RuntimeException that contains more detailed information for users.

UserFriendlyNullPointerException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException

UserFriendlyRuntimeException - Exception in org.hkijena.jipipe.api.exceptions

A RuntimeException that contains more detailed information for users.

UserFriendlyRuntimeException(String, Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserFriendlyRuntimeException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserFriendlyRuntimeException(Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException

UserParameterDefinition(JIPipeDynamicParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition

UtilitiesExtension - Class in org.hkijena.jipipe.extensions.utils

UtilitiesExtension() - Constructor for class org.hkijena.jipipe.extensions.utils.UtilitiesExtension

V

validatePlugins(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Validates the plugins

validateProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench

Validates the project

value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot

value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot

valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.JIPipeGraphType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm.DimensionOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.DisplayRangeStop

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.IOMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.PathMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.hkijena.jipipe.utils.ListSelectionMode

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.JIPipeGraphType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm.DimensionOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.DisplayRangeStop

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.IOMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.PathMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.hkijena.jipipe.utils.ListSelectionMode

Returns an array containing the constants of this enum type, in the order they are declared.

VARIABLE_ABSPATH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

VARIABLE_NAME - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

VARIABLE_PARENT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

VARIABLE_PATH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource

VariableExistsFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions

VariableExistsFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction

VariableExistsOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators

VariableExistsOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator

VARIABLES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource

VARIABLES - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource

VariableSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions

Panel that allows the user to select an ExpressionFunction

VariableSelectorList(Set<ExpressionParameterVariable>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList

VariableSelectorList.ExpressionVariableRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions

vertexAdded(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

vertexRemoved(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector

VirtualDataControl - Class in org.hkijena.jipipe.ui.data

A tool that automatically runs 'update cache' when any parameter or graph property is changed

VirtualDataControl(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.data.VirtualDataControl

VirtualDataSettings - Class in org.hkijena.jipipe.extensions.settings

VirtualDataSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.VirtualDataSettings

Voronoi2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary

Wrapper around EDM

Voronoi2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

Instantiates a new node type.

Voronoi2DAlgorithm(Voronoi2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm

Instantiates a new node type.

W

walkInternalResourceFolder(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils

Iterates through all internal resources and

walkInternalResourceFolder(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils

Iterates through all internal resources and

warn(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

warn(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger

wasCanceled - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog

WeakPredecessorInspector<V,E> - Class in org.hkijena.jipipe.utils

Calculates the predecessor set of a vertex

WeakPredecessorInspector(Graph<V, E>) - Constructor for class org.hkijena.jipipe.utils.WeakPredecessorInspector

WebUtils - Class in org.hkijena.jipipe.installer.linux.api

WebUtils() - Constructor for class org.hkijena.jipipe.installer.linux.api.WebUtils

WebUtils - Class in org.hkijena.jipipe.utils

WebUtils() - Constructor for class org.hkijena.jipipe.utils.WebUtils

windowActivated(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

windowClosed(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

WindowClosedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when a JIPipe window was closed

WindowClosedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowClosedEvent

windowClosing(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

windowDeactivated(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

windowDeiconified(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

windowIconified(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

WindowListCellRenderer<T extends Frame> - Class in org.hkijena.jipipe.ui.components

WindowListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.WindowListCellRenderer

windowOpened(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow

WindowOpenedEvent - Class in org.hkijena.jipipe.ui.events

Triggered when a window was opened

WindowOpenedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowOpenedEvent

WindowQueryExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions

WindowQueryExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.WindowQueryExpressionParameterVariableSource

WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow

WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWindow

WindowWatcher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher

WITH_DOCUMENTATION - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Flag that indicates that a documentation panel is shown.

WITH_DOCUMENTATION - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that indicates that a documentation panel is shown.

WITH_INFINITE_SCROLLING - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that items should only be displayed when necessary

WITH_SCROLLING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel

Flag that makes the content be wrapped in a JScrollPane

WITH_SCROLLING - Static variable in class org.hkijena.jipipe.ui.components.FormPanel

Flag that makes the content be wrapped in a JScrollPane

WITH_SEARCH_BAR - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, there will be a search bar for parameters.

WITHOUT_LABEL_SEPARATION - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel

With this flag, parameters that do not show a label are not put below anymore

withoutInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Disables input

withoutOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder

Disables output

wordWrappedHTML(String, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Create word wrapping in HTML.

wordWrappedHTML(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils

Create word wrapping in HTML.

wordWrappedHTMLElement(String, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils

Create word wrapping in HTML.

wordWrappedHTMLElement(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils

Create word wrapping in HTML.

WorkDirectoryChangedEvent(Path) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.WorkDirectoryChangedEvent

WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer

Creates a new instance

WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer

Creates a new instance

writeImage(BufferedImage, String) - Static method in class org.hkijena.jipipe.utils.ScreenImage

Write a BufferedImage to a File.

writeToFolder(List<JIPipeDataSlot>, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Writes data to the specified folder

writeToFolder(JIPipeDataSlot, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Writes data to the specified folder

writeToFolder(JIPipeDataSlot, Path, JIPipeProgressInfo, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Writes data to the specified folder

writeToFolder(JIPipeDataSlot, int, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Writes data to the specified folder

writeToFolder(JIPipeDataSlot, int, Path, JIPipeProgressInfo, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter

Writes data to the specified folder

X

XMLData - Class in org.hkijena.jipipe.extensions.strings

XMLData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData

XMLData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData

XYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes

Contains data for XY plots Any plot has following columns: X (Double), Y (Double)

XYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a new instance

XYPlotData(XYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData

Creates a copy

Z

ZeroTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes

Generates numbers from 0 to row count

ZeroTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn

ZipUtils - Class in org.hkijena.jipipe.installer.linux.api

ZipUtils() - Constructor for class org.hkijena.jipipe.installer.linux.api.ZipUtils

zoom(double) - Method in class org.hkijena.jipipe.utils.PointRange

Apply scaling to all components and return the result.

ZoomChangedEvent(ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomViewPort.ZoomChangedEvent

ZoomFlatIconButton - Class in org.hkijena.jipipe.ui.components

Flat JButton that zooms and displays a zoomable icon

ZoomFlatIconButton(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomFlatIconButton

ZoomIcon - Class in org.hkijena.jipipe.ui.components

Icon that adapts to the zoom level of a ZoomViewPort

ZoomIcon(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomIcon

zoomIn() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

ZoomLabel - Class in org.hkijena.jipipe.ui.components

JLabel that changes its font based on the ZoomViewPort zoom level

ZoomLabel(String, Icon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomLabel

zoomOut() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI

ZoomViewPort - Interface in org.hkijena.jipipe.ui.components

ZoomViewPort.ZoomChangedEvent - Class in org.hkijena.jipipe.ui.components

Triggered by ZoomViewPort when the zoom was changed

ZProjectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Wrapper around ZProjector

ZProjectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

Instantiates a new node type.

ZProjectorAlgorithm(ZProjectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm

Instantiates a new node type.

ZProjectorAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions

Available transformation functions

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