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A

a0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
a1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
AbsoluteColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a abs(x) function
AbsoluteColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
accept(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod
 
accepts(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns true if the slot can carry the provided data.
accepts(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns true if the slot can carry the provided data.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ExpressionTesterMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
ActivateUpdateSiteRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ActivateUpdateSiteRun(FilesCollection, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
add(JIPipeProject, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
add(JIPipeProject, JIPipeDataSlot, JIPipeExportedDataTable) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
add(JIPipeParameterCollection, String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Adds a new JIPipeParameterCollection into this collection.
add(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Adds the value to all components
add(Point) - Method in class org.hkijena.jipipe.utils.PointRange
Adds the point's x and y coordinates to all points
ADD_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules that convert any input data type into their respective mask data type
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
Adds a listener for when the path property changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyTextField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor
Adds a listener for when the path property changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.SearchTextField
Adds a listener for when the search text changes
addAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Adds a new node type of specified type
AddAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddAlgorithmSlotPanel(JIPipeGraphNode, JIPipeSlotType, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
addAnnotationColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
Adds a new column that contains annotation data and returns its index- If the column already exists, its index is returned.
AddAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
AddAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
Creates a new instance
AddAnnotationColumnsAlgorithm(AddAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
Creates a copy
addAnnotationIfEnabled(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeAnnotation>, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeAnnotation>, Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationToAllData(JIPipeAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Adds an annotation to all existing data
addButton(String, ActionListener) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addChild(String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
addColumn() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Adds a new column
addColumn(ParameterTable.ParameterColumn, Object) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Adds a new column to the table
addColumn(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(String, TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(Component) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel
Adds an additional component on the right hand side
addColumn(Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
Adds an additional component on the right hand side
addColumns(Collection<ResultsTableData>, boolean, TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds columns from another table
addCompartment(String) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds a new project compartment
addCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds an existing compartment instance
AddCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
AddCompartmentGraphHistorySnapshot(JIPipeProject, String) - Constructor for class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
addContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds a new element into the group.
addContent(Collection<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds multiple elements.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Add this theme's custom entries to the defaults table.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Add this theme's custom entries to the defaults table.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Add this theme's custom entries to the defaults table.
addData(JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Adds a data row
addData(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Adds a data row
addData(JIPipeDataSlot, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Copies the source slot into this slot.
addData(JIPipeVirtualData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Adds data as virtual data reference
addData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds the data row of a given slot.
addData(JIPipeDataSlot, Collection<Integer>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds the data row of a given slot.
AddDynamicParameterPanel - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddDynamicParameterPanel(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
 
addEntry(UserFriendlyErrorUI.Entry) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
Adds an entry to the UI
addEscapeListener(JDialog) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a JDialog close when the escape key is hit
addFillerGridBagComponent(Container, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Equivalent of Box.verticalGlue() for GridBagLayout
addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds an annotation to the annotation list
addGlobalAnnotation(JIPipeAnnotation, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds an annotation to the annotation list
addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds annotations to the global annotation storage of this interface.
addGlobalAnnotations(Map<String, String>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds annotations to the global annotation storage of this interface.
addGlobalAnnotations(List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds annotations to the global annotation storage of this interface.
addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a group header
addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a group header
addGroups(Collection<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Adds multiple groups
addInputSlot(String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new input slot
addInputSlot(String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
AdditionFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
AdditionFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel
 
addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor
 
addLeftToolbarButtons(JToolBar) - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
 
addMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addMessage(MessagePanel.MessageType, String, JButton) - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
addNameToColumnIdentifiers(DefaultTableModel, String) - Static method in class org.hkijena.jipipe.utils.TableUtils
Adds a name to columns
addNewGroup() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Adds a new empty group
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter
Adds a new instance of the content class Override this method for types that cannot be default-constructed
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringList
 
AddNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
AddNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
AddNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
Wrapper around ImageProcessor
AddNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
Instantiates a new node type.
AddNoise2DAlgorithm(AddNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
Instantiates a new node type.
addNumericColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all traits should be set up till this point
addOutputSlot(String, Class<? extends JIPipeData>, String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new input slot
addOutputSlot(String, Class<? extends JIPipeData>, String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlot(String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addParameter(JIPipeMutableParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter.
addParameter(String, Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter
addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Adds an existing popup menu to a button
addPopupMenuToComponent(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds a popup menu to a button.
addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button
addProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addRecentJsonExtension(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a JSON extension file to the list of recent JSON extensions
addRecentProject(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a project file to the list of recent projects
addReloadablePopupMenuToComponent(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
AddROIToActiveJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToActiveJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
AddROIToJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Adds a new row
addRow(List<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Adds a row with raw values.
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Creates a new empty row
addRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row
addRows(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds multiple rows
addRows(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Merges another results table into this one
addSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Adds a new series into this plot
addSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Adds a new series
addSingletonTab(String, String, Icon, Component, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Adds a tab that can be silently closed and brought up again
addSingletonTab(String, String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Adds a tab that can be silently closed and brought up again
addSlide(Component, String) - Method in class org.hkijena.jipipe.utils.DotSlideshow
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a slots
addSlot(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds a slot
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration
 
addSnapshotBefore(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory
Adds a snapshot into the stack
addStringColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addTab(String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Adds a new tab
addTab(String, Icon, Component, DocumentTabPane.CloseMode) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Adds a new tab
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
addText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addTo(JIPipeProject, String) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Adds the compartment to a project as the specified compartment name
addToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a component to the form
addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a component to the form
addToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
addToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
addToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
addToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
addToRoiManager(RoiManager) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Adds the ROI to an existing ROI manager instance
addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Adds an algorithm to the selection
addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Adds an algorithm to the selection
addToTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds the table to an existing table
addUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
addVerticalGlue() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a component that acts as Box.verticalGlue()
addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a vertical glue component
addVerticalGlue() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component that acts as Box.verticalGlue()
addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a vertical glue component
addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Adds a component.
addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
AlgorithmBackup(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup
 
AlgorithmDeselectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent
 
AlgorithmEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI.AlgorithmEvent
Creates a new event
AlgorithmFinderSuccessEvent - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
Generated when the algorithm finder successfully found a connection
AlgorithmFinderSuccessEvent(JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent
 
AlgorithmGraphCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
AlgorithmGraphCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
AlgorithmGraphCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
AlgorithmGraphCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
AlgorithmGraphPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
AlgorithmGraphPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
AlgorithmSelectedEvent(JIPipeNodeUI, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectedEvent
 
AlgorithmSelectionChangedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent
 
AlgorithmUIActionRequestedEvent(JIPipeNodeUI, Object) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent
Initializes a new instance
ALL_DESCRIPTIONS - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
AllCacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data
 
AllCacheToNonVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
AllCacheToVirtualRun - Class in org.hkijena.jipipe.ui.data
 
AllCacheToVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
ALLOWED_PARAMETER_TYPES - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
allowOutputSlotInheritance(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Enables/disables if slot inheritance is allowed
allowsInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
allowsOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
Anchor - Enum in org.hkijena.jipipe.extensions.parameters.roi
An anchor
AnchorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi
Editor for Margin
AnchorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI
 
AnnotateByExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that annotates all data with the same annotation
AnnotateByExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
AnnotateByExpression(AnnotateByExpression) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
Copies the algorithm
AnnotateWithAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
AnnotateWithAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a new instance
AnnotateWithAnnotationTable(AnnotateWithAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a copy
AnnotateWithDataString - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
AnnotateWithDataString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
New instance
AnnotateWithDataString(AnnotateWithDataString) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
Copies the algorithm
AnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
An expression that is used to generate annotations for data
AnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
AnnotationGeneratorExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpressionVariableSource
 
annotationListToMap(Collection<JIPipeAnnotation>, JIPipeAnnotationMergeStrategy) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Converts a set of annotations to a map
annotationListToPython(Collection<JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Converts a list of annotations into a Python dictionary
annotationMapToPython(Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Converts a map of annotations into a Python dictionary
AnnotationQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
An expression that is used to query annotations
AnnotationQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
 
AnnotationQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
AnnotationQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpressionVariableSource
 
AnnotationsExtension - Class in org.hkijena.jipipe.extensions.annotation
Extension that provides data types and algorithms to modify data annotations
AnnotationsExtension() - Constructor for class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
AnnotationsNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
AnnotationsNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
AnnotationTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes
A special kind of ResultsTableData that stores annotation columns.
AnnotationTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
AnnotationTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
AnnotationTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
AnnotationTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
AnnotationTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
AnnotationTableFromFile - Class in org.hkijena.jipipe.extensions.annotation.datasources
Imports AnnotationTableData from a file
AnnotationTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
 
AnnotationTableFromFile(AnnotationTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
Copies the algorithm
AnnotationTableToPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationTableToPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Instantiates the algorithm
AnnotationTableToPaths(AnnotationTableToPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Copies the algorithm
AnnotationToPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationToPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Instantiates the algorithm
AnnotationToPath(AnnotationToPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Copies the algorithm
annotationType() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
AppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
AppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm
Instantiates a new node type.
AppendRectangularRoiAlgorithm(AppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm
Instantiates a new node type.
apply(double) - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap
Generates a color according to the color map
apply(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryToStringFunction
 
apply(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
apply(Integer) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
apply(Rectangle) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
Generates the rectangle defined by the definition.
apply(Collection<Boolean>) - Method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation
Apply the logical operation for the items
apply(TableColumn) - Method in interface org.hkijena.jipipe.extensions.tables.ColumnOperation
Applies the operation
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation
 
applyCalibration(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
applyCalibration(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
applyCalibrationTo(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
ApplyDistanceTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around EDM
ApplyDistanceTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyDistanceTransform2DAlgorithm(ApplyDistanceTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyExpressionPerRowAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
 
ApplyExpressionPerRowAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm
 
ApplyExpressionPerRowAlgorithm(ApplyExpressionPerRowAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm
 
applyInheritanceConversion(JIPipeDataSlotInfo, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Applies inheritance conversion.
applyLUT(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
ApplyMath2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyMath2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm(ApplyMath2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Available transformation functions
ApplyMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
ApplyMathExpression2DAlgorithm(ApplyMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
applyOperation(List<ResultsTableData.Index>, ConvertingColumnOperation) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Applies an operation to the selected cells
ApplyRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ApplyRun(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
applyThemeToCodeEditor(RSyntaxTextArea) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
ApplyTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm(ApplyTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Available transformation functions
applyUpdates(FilesCollection) - Static method in class org.hkijena.ijupdatercli.Main
 
applyVirtualState(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
If virtual, put all data into the virtual storage If not, fetch all virtual data from storage This function reacts to the virtual mode setting in VirtualDataSettings and will refuse to make data virtual
ArcusCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
ArcusSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
ArcusTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
ArrangeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Wrapper around ChannelArranger
ArrangeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
Instantiates a new node type.
ArrangeChannelsAlgorithm(ArrangeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
Creates a copy
ArrowLessScrollBarUI - Class in org.hkijena.jipipe.installer.linux.ui.utils
 
ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI
 
ArrowLessScrollBarUI - Class in org.hkijena.jipipe.ui.theme
 
ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
askOpenInCurrentWindow(Component, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Asks the user how to open a project: In the current window or a new window
AssembleExtractedROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
AssembleExtractedROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
assignButtonMenu - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
assignData(String, TableColumn) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Assigns data to a column
assignDataStoragePaths() - Method in class org.hkijena.jipipe.api.JIPipeRun
Iterates through output slots and assigns the data storage paths
attach(Class<?>, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches an object as the specified type
attach(Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches the object with its class as key
autoClean(boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Safely removes cache entries that are not accessible anymore (e.g. an algorithm was removed from the graph; or states where the slots do not exist anymore)
autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
autoExpandLeftTop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
autoLayout() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Applies a full auto-layout method
autoLayoutAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Auto-layouts all UIs
autoPlaceCloseToCursor(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
autoSave(JIPipeProjectWindow) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
autoSaveAll() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
AutoSaveSettings - Class in org.hkijena.jipipe.extensions.settings
 
AutoSaveSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
autoSizeColumns() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
Auto-sizes all columns
AutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Segmenter node that thresholds via an auto threshold
AutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
AutoThreshold2DAlgorithm(AutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
Copies the algorithm
AVICompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Wrapper around AVI_Writer compression

B

b0 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
b1 - Variable in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
BackgroundPanel - Class in org.hkijena.jipipe.ui.components
 
BackgroundPanel(BufferedImage, boolean) - Constructor for class org.hkijena.jipipe.ui.components.BackgroundPanel
 
BarBoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
BarBoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a new instance
BarBoxAndWhiskerCategoryPlotData(BarBoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a copy
BarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
BarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a new instance
BarCategoryPlotData(BarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a copy
BarStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
BarStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a new instance
BarStatisticalCategoryPlotData(BarStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a copy
beginModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Halts all ParameterStructureChangedEvent until endModificationBlock() is called.
BioFormatsExporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
BioFormatsExporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
BioFormatsExporter(BioFormatsExporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
BioFormatsImporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources
BioFormats importer wrapper
BioFormatsImporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
BioFormatsImporter(BioFormatsImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
Copies the algorithm
bold - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
BooleanFalseConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants
 
BooleanFalseConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.BooleanFalseConstant
 
BooleanParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter editor for boolean data
BooleanParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI
 
BooleanParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Boolean
BooleanParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
BooleanPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Boolean
BooleanPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
BooleanTrueConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants
 
BooleanTrueConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.BooleanTrueConstant
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for box and whisker category plots category plots.
BoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a new instance
BoxAndWhiskerCategoryPlotData(BoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a copy
BoxFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around ImageProcessor
BoxFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter2DAlgorithm(BoxFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around GaussianBlur
BoxFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm(BoxFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
BrightSpotsSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Applies Bright spots segmentation
BrightSpotsSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
BrightSpotsSegmentation2DAlgorithm(BrightSpotsSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
Copies the algorithm
build() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
 
build() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
build() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Returns the finished object
builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
builder() - Static method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
Creates a new builder
Builder() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
 
buildFor(Path, StaticVariableSet<Object>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
buildSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Generates a series
buildVariablesSet(ImagePlus, StaticVariableSet<Object>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource
Builds the proper variable set for an image
BusyCursor - Class in org.hkijena.jipipe.utils
A cursor for a component to indicate that some process is running
BusyCursor(Component) - Constructor for class org.hkijena.jipipe.utils.BusyCursor
 
ByteParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Byte
ByteParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
BytePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Byte
BytePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
ByteRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Byte
ByteRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ByteRangeParameterGenerator
Creates a new instance

C

CacheAwareImagePlusDataViewerPanel - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
CacheAwareImagePlusDataViewerPanel(JIPipeWorkbench, JIPipeCacheSlotDataSource) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel
 
CacheAwareOpenResultsTableInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.tables.display
 
CacheAwareOpenResultsTableInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
CacheAwareTableEditor - Class in org.hkijena.jipipe.extensions.tables.display
 
CacheAwareTableEditor(JIPipeWorkbench, JIPipeCacheSlotDataSource) - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor
 
CacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data
 
CacheToNonVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
CacheToVirtualRun - Class in org.hkijena.jipipe.ui.data
 
CacheToVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Calculates the size in grid coordinates
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Calculates the size in grid coordinates
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
calculateMaxTabHeight(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
calibrate(ImagePlus, ImageJCalibrationMode, double, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Calibrates the image.
canAddInputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddInputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAddOutputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddOutputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAutoPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can automatically apply pass-through This is only possible if there is at most one input and at most one output.
cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Cancels a runnable
cancel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Cancels a runnable
cancel(boolean) - Method in class org.hkijena.jipipe.utils.InstantFuture
 
canConnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Slow implementation of connection checking that tests for graph cycles
canConnectFast(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Fast implementation of connection checking without copying the graph
canConvertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Returns true if this adapter can convert to the specified JIPipe data type
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
canConvertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Returns true if this adapter can convert to the specified ImageJ data type
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
canConvertJIPipeToImageJ(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an input slot with specified type can be created
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an output slot with specified type can be created
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canExtract() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
canExtract() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns if the node can be extracted (copied) from the graph
canModifyInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canModifyOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can apply pass-through.
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
canRegister() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
canRegister() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask
Returns true if the registration can be done This function should fail as fast as possible
canRegister() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
canShow(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation
Checks if the import is possible
canShow(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
canUserDelete(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can delete the algorithm
canUserDelete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if a user can delete this algorithm
canUserDisconnect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can disconnect the slots
CanvasEqualizer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
CanvasEqualizer() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
CanvasEqualizer(CanvasEqualizer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
CategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for category plots.
CategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a new instance
CategoryPlotData(CategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a copy
CeilingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
CeilingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
center - Variable in class org.hkijena.jipipe.utils.PointRange
 
centerImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
changed(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener
All-in-one event for insertion, removal, change
changed(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
All-in-one event for insertion, removal, change
changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener
 
changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
ChangeRoiPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ChangeRoiPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesAlgorithm(ChangeRoiPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
channelsToRGB(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converted a 3-channel image into RGB (reducing the dimensionality)
CheckBoxIcon - Class in org.hkijena.jipipe.installer.linux.ui.utils
Taken from MetalIconFactory
CheckBoxIcon() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
CheckBoxIcon - Class in org.hkijena.jipipe.utils
Taken from MetalIconFactory
CheckBoxIcon(Color) - Constructor for class org.hkijena.jipipe.utils.CheckBoxIcon
 
checkExtensionDependencies(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
checkIfWithin(Object, double, double, double, boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports as invalid if the value is not within the limits
checkNonEmpty(String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports as invalid if the string value is null or empty
checkNonNull(Object, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports as invalid if the value is null
checkScriptParametersValidity(JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils
 
checkScriptValidity(String, JIPipeCustomParameterCollection, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.utils.PythonUtils
 
checkSyntax(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
Checks the syntax of an expression.
checkUpdateSites(JIPipeRegistryIssues, List<JIPipeDependency>, Progress) - Method in class org.hkijena.jipipe.JIPipe
Checks the update sites of all extensions and stores the results in the issues
choosePath() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
Opens the file chooser
choosePath() - Method in class org.hkijena.jipipe.ui.components.PathEditor
Opens the file chooser
CLAHEContrastEnhancer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
Applies CLAHE image enhancing
CLAHEContrastEnhancer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
CLAHEContrastEnhancer(CLAHEContrastEnhancer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
Copies the algorithm
ClampNegativeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a min(0, x) function
ClampNegativeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
ClampPositiveColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a max(0, x) function
ClampPositiveColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
cleanupGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject
Re-assigns graph node Ids based on their name
cleanupIds() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Re-assigns new Ids to the all nodes
clear(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes an algorithm from the cache
clear(JIPipeGraphNode, JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes an algorithm from the cache
clear() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes everything from the cache
clear() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Clears the report
clear() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Clears this graph
clear() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Removes all parameters
clear() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Clears the table
clear() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Removes all components
clear() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Removes all components
clear() - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
clearData() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Removes all data from this slot
clearInputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all input slots
clearLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Removes all location information added via setLocationWithin()
clearLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
clearOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all output slots
clearSearch() - Method in class org.hkijena.jipipe.ui.components.SearchBox
Clears the search field
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Clears the list of selected algorithms
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Clears the algorithm selection
clearSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Removes all series
clearSlotData() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Clears all data slots
Clij2Absolute - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Absolute
Clij2Absolute(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute
Creates a new instance
Clij2Absolute(Clij2Absolute) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute
Creates a copy
Clij2AbsoluteDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AbsoluteDifference
Clij2AbsoluteDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference
Creates a new instance
Clij2AbsoluteDifference(Clij2AbsoluteDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference
Creates a copy
Clij2AddImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AddImageAndScalar
Clij2AddImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar
Creates a new instance
Clij2AddImageAndScalar(Clij2AddImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar
Creates a copy
Clij2AddImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AddImages
Clij2AddImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages
Creates a new instance
Clij2AddImages(Clij2AddImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages
Creates a copy
Clij2AddImagesWeighted - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AddImagesWeighted
Clij2AddImagesWeighted(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
Creates a new instance
Clij2AddImagesWeighted(Clij2AddImagesWeighted) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
Creates a copy
Clij2AdjacencyMatrixToTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AdjacencyMatrixToTouchMatrix
Clij2AdjacencyMatrixToTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix
Creates a new instance
Clij2AdjacencyMatrixToTouchMatrix(Clij2AdjacencyMatrixToTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix
Creates a copy
Clij2AffineTransform2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AffineTransform2D
Clij2AffineTransform2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d
Creates a new instance
Clij2AffineTransform2d(Clij2AffineTransform2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d
Creates a copy
Clij2AffineTransform3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AffineTransform3D
Clij2AffineTransform3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d
Creates a new instance
Clij2AffineTransform3d(Clij2AffineTransform3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d
Creates a copy
Clij2ApplyVectorField2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ApplyVectorField2D
Clij2ApplyVectorField2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d
Creates a new instance
Clij2ApplyVectorField2d(Clij2ApplyVectorField2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d
Creates a copy
Clij2ApplyVectorField3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ApplyVectorField3D
Clij2ApplyVectorField3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d
Creates a new instance
Clij2ApplyVectorField3d(Clij2ApplyVectorField3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d
Creates a copy
Clij2ArgMaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ArgMaximumZProjection
Clij2ArgMaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection
Creates a new instance
Clij2ArgMaximumZProjection(Clij2ArgMaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection
Creates a copy
Clij2AutomaticThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AutomaticThreshold
Clij2AutomaticThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
Creates a new instance
Clij2AutomaticThreshold(Clij2AutomaticThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
Creates a copy
Clij2AverageDistanceOfNClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AverageDistanceOfNClosestPoints
Clij2AverageDistanceOfNClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints
Creates a new instance
Clij2AverageDistanceOfNClosestPoints(Clij2AverageDistanceOfNClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints
Creates a copy
Clij2AverageDistanceOfNFarOffPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AverageDistanceOfNFarOffPoints
Clij2AverageDistanceOfNFarOffPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints
Creates a new instance
Clij2AverageDistanceOfNFarOffPoints(Clij2AverageDistanceOfNFarOffPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints
Creates a copy
Clij2AverageDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from AverageDistanceOfTouchingNeighbors
Clij2AverageDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors
Creates a new instance
Clij2AverageDistanceOfTouchingNeighbors(Clij2AverageDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors
Creates a copy
Clij2BinaryAnd - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryAnd
Clij2BinaryAnd(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd
Creates a new instance
Clij2BinaryAnd(Clij2BinaryAnd) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd
Creates a copy
Clij2BinaryEdgeDetection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryEdgeDetection
Clij2BinaryEdgeDetection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection
Creates a new instance
Clij2BinaryEdgeDetection(Clij2BinaryEdgeDetection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection
Creates a copy
Clij2BinaryFillHoles - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryFillHoles
Clij2BinaryFillHoles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles
Creates a new instance
Clij2BinaryFillHoles(Clij2BinaryFillHoles) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles
Creates a copy
Clij2BinaryNot - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryNot
Clij2BinaryNot(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot
Creates a new instance
Clij2BinaryNot(Clij2BinaryNot) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot
Creates a copy
Clij2BinaryOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryOr
Clij2BinaryOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr
Creates a new instance
Clij2BinaryOr(Clij2BinaryOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr
Creates a copy
Clij2BinarySubtract - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinarySubtract
Clij2BinarySubtract(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract
Creates a new instance
Clij2BinarySubtract(Clij2BinarySubtract) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract
Creates a copy
Clij2BinaryXOr - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BinaryXOr
Clij2BinaryXOr(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr
Creates a new instance
Clij2BinaryXOr(Clij2BinaryXOr) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr
Creates a copy
Clij2BottomHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BottomHatBox
Clij2BottomHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
Creates a new instance
Clij2BottomHatBox(Clij2BottomHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
Creates a copy
Clij2BottomHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from BottomHatSphere
Clij2BottomHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
Creates a new instance
Clij2BottomHatSphere(Clij2BottomHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
Creates a copy
Clij2CentroidsOfLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CentroidsOfLabels
Clij2CentroidsOfLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels
Creates a new instance
Clij2CentroidsOfLabels(Clij2CentroidsOfLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels
Creates a copy
Clij2CloseIndexGapsInLabelMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CloseIndexGapsInLabelMap
Clij2CloseIndexGapsInLabelMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap
Creates a new instance
Clij2CloseIndexGapsInLabelMap(Clij2CloseIndexGapsInLabelMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap
Creates a copy
Clij2ClosingBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ClosingBox
Clij2ClosingBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox
Creates a new instance
Clij2ClosingBox(Clij2ClosingBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox
Creates a copy
Clij2ClosingDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ClosingDiamond
Clij2ClosingDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond
Creates a new instance
Clij2ClosingDiamond(Clij2ClosingDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond
Creates a copy
Clij2CombineHorizontally - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CombineHorizontally
Clij2CombineHorizontally(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally
Creates a new instance
Clij2CombineHorizontally(Clij2CombineHorizontally) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally
Creates a copy
Clij2CombineVertically - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CombineVertically
Clij2CombineVertically(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically
Creates a new instance
Clij2CombineVertically(Clij2CombineVertically) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically
Creates a copy
Clij2ConcatenateStacks - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ConcatenateStacks
Clij2ConcatenateStacks(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks
Creates a new instance
Clij2ConcatenateStacks(Clij2ConcatenateStacks) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks
Creates a copy
Clij2Convolve - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Convolve
Clij2Convolve(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve
Creates a new instance
Clij2Convolve(Clij2Convolve) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve
Creates a copy
Clij2Copy - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Copy
Clij2Copy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy
Creates a new instance
Clij2Copy(Clij2Copy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy
Creates a copy
Clij2CopySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CopySlice
Clij2CopySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice
Creates a new instance
Clij2CopySlice(Clij2CopySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice
Creates a copy
Clij2CountNonZeroPixels2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CountNonZeroPixels2DSphere
Clij2CountNonZeroPixels2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
Creates a new instance
Clij2CountNonZeroPixels2dSphere(Clij2CountNonZeroPixels2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
Creates a copy
Clij2CountNonZeroPixelsSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CountNonZeroPixelsSliceBySliceSphere
Clij2CountNonZeroPixelsSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
Creates a new instance
Clij2CountNonZeroPixelsSliceBySliceSphere(Clij2CountNonZeroPixelsSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
Creates a copy
Clij2CountNonZeroVoxels3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CountNonZeroVoxels3DSphere
Clij2CountNonZeroVoxels3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
Creates a new instance
Clij2CountNonZeroVoxels3dSphere(Clij2CountNonZeroVoxels3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
Creates a copy
Clij2CountTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from CountTouchingNeighbors
Clij2CountTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors
Creates a new instance
Clij2CountTouchingNeighbors(Clij2CountTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors
Creates a copy
Clij2Crop2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Crop2D
Clij2Crop2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
Creates a new instance
Clij2Crop2d(Clij2Crop2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
Creates a copy
Clij2Crop3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Crop3D
Clij2Crop3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
Creates a new instance
Clij2Crop3d(Clij2Crop3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
Creates a copy
Clij2DepthColorProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DepthColorProjection
Clij2DepthColorProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
Creates a new instance
Clij2DepthColorProjection(Clij2DepthColorProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
Creates a copy
Clij2DetectLabelEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DetectLabelEdges
Clij2DetectLabelEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges
Creates a new instance
Clij2DetectLabelEdges(Clij2DetectLabelEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges
Creates a copy
Clij2DetectMaximaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DetectMaximaSliceBySliceBox
Clij2DetectMaximaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
Creates a new instance
Clij2DetectMaximaSliceBySliceBox(Clij2DetectMaximaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
Creates a copy
Clij2DetectMinimaSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DetectMinimaSliceBySliceBox
Clij2DetectMinimaSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
Creates a new instance
Clij2DetectMinimaSliceBySliceBox(Clij2DetectMinimaSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
Creates a copy
Clij2DifferenceOfGaussian2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DifferenceOfGaussian2D
Clij2DifferenceOfGaussian2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
Creates a new instance
Clij2DifferenceOfGaussian2d(Clij2DifferenceOfGaussian2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
Creates a copy
Clij2DifferenceOfGaussian3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DifferenceOfGaussian3D
Clij2DifferenceOfGaussian3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
Creates a new instance
Clij2DifferenceOfGaussian3d(Clij2DifferenceOfGaussian3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
Creates a copy
Clij2DilateBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DilateBox
Clij2DilateBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox
Creates a new instance
Clij2DilateBox(Clij2DilateBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox
Creates a copy
Clij2DilateBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DilateBoxSliceBySlice
Clij2DilateBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice
Creates a new instance
Clij2DilateBoxSliceBySlice(Clij2DilateBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice
Creates a copy
Clij2DilateSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DilateSphere
Clij2DilateSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere
Creates a new instance
Clij2DilateSphere(Clij2DilateSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere
Creates a copy
Clij2DilateSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DilateSphereSliceBySlice
Clij2DilateSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice
Creates a new instance
Clij2DilateSphereSliceBySlice(Clij2DilateSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice
Creates a copy
Clij2DistanceMap - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DistanceMap
Clij2DistanceMap(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap
Creates a new instance
Clij2DistanceMap(Clij2DistanceMap) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap
Creates a copy
Clij2DivideImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DivideImages
Clij2DivideImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages
Creates a new instance
Clij2DivideImages(Clij2DivideImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages
Creates a copy
Clij2DownsampleSliceBySliceHalfMedian - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from DownsampleSliceBySliceHalfMedian
Clij2DownsampleSliceBySliceHalfMedian(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian
Creates a new instance
Clij2DownsampleSliceBySliceHalfMedian(Clij2DownsampleSliceBySliceHalfMedian) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian
Creates a copy
Clij2EntropyBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from EntropyBox
Clij2EntropyBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
Creates a new instance
Clij2EntropyBox(Clij2EntropyBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
Creates a copy
Clij2Equal - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Equal
Clij2Equal(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal
Creates a new instance
Clij2Equal(Clij2Equal) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal
Creates a copy
Clij2EqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from EqualConstant
Clij2EqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant
Creates a new instance
Clij2EqualConstant(Clij2EqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant
Creates a copy
Clij2EqualizeMeanIntensitiesOfSlices - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from EqualizeMeanIntensitiesOfSlices
Clij2EqualizeMeanIntensitiesOfSlices(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices
Creates a new instance
Clij2EqualizeMeanIntensitiesOfSlices(Clij2EqualizeMeanIntensitiesOfSlices) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices
Creates a copy
Clij2ErodeBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ErodeBox
Clij2ErodeBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox
Creates a new instance
Clij2ErodeBox(Clij2ErodeBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox
Creates a copy
Clij2ErodeBoxSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ErodeBoxSliceBySlice
Clij2ErodeBoxSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice
Creates a new instance
Clij2ErodeBoxSliceBySlice(Clij2ErodeBoxSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice
Creates a copy
Clij2ErodeSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ErodeSphere
Clij2ErodeSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere
Creates a new instance
Clij2ErodeSphere(Clij2ErodeSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere
Creates a copy
Clij2ErodeSphereSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ErodeSphereSliceBySlice
Clij2ErodeSphereSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice
Creates a new instance
Clij2ErodeSphereSliceBySlice(Clij2ErodeSphereSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice
Creates a copy
Clij2ExcludeLabels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabels
Clij2ExcludeLabels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels
Creates a new instance
Clij2ExcludeLabels(Clij2ExcludeLabels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels
Creates a copy
Clij2ExcludeLabelsOnEdges - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabelsOnEdges
Clij2ExcludeLabelsOnEdges(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges
Creates a new instance
Clij2ExcludeLabelsOnEdges(Clij2ExcludeLabelsOnEdges) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges
Creates a copy
Clij2ExcludeLabelsOnSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabelsOnSurface
Clij2ExcludeLabelsOnSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
Creates a new instance
Clij2ExcludeLabelsOnSurface(Clij2ExcludeLabelsOnSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
Creates a copy
Clij2ExcludeLabelsSubSurface - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabelsSubSurface
Clij2ExcludeLabelsSubSurface(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
Creates a new instance
Clij2ExcludeLabelsSubSurface(Clij2ExcludeLabelsSubSurface) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
Creates a copy
Clij2ExcludeLabelsWithValuesOutOfRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabelsWithValuesOutOfRange
Clij2ExcludeLabelsWithValuesOutOfRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
Creates a new instance
Clij2ExcludeLabelsWithValuesOutOfRange(Clij2ExcludeLabelsWithValuesOutOfRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
Creates a copy
Clij2ExcludeLabelsWithValuesWithinRange - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExcludeLabelsWithValuesWithinRange
Clij2ExcludeLabelsWithValuesWithinRange(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
Creates a new instance
Clij2ExcludeLabelsWithValuesWithinRange(Clij2ExcludeLabelsWithValuesWithinRange) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
Creates a copy
Clij2ExecuteKernelIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelIterating(Clij2ExecuteKernelIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelSimpleIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelSimpleIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2ExecuteKernelSimpleIterating(Clij2ExecuteKernelSimpleIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2Exponential - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Exponential
Clij2Exponential(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential
Creates a new instance
Clij2Exponential(Clij2Exponential) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential
Creates a copy
Clij2ExtendLabelingViaVoronoi - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ExtendLabelingViaVoronoi
Clij2ExtendLabelingViaVoronoi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi
Creates a new instance
Clij2ExtendLabelingViaVoronoi(Clij2ExtendLabelingViaVoronoi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi
Creates a copy
Clij2FloodFillDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from FloodFillDiamond
Clij2FloodFillDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
Creates a new instance
Clij2FloodFillDiamond(Clij2FloodFillDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
Creates a copy
Clij2GaussianBlur2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GaussianBlur2D
Clij2GaussianBlur2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
Creates a new instance
Clij2GaussianBlur2d(Clij2GaussianBlur2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
Creates a copy
Clij2GaussianBlur3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GaussianBlur3D
Clij2GaussianBlur3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
Creates a new instance
Clij2GaussianBlur3d(Clij2GaussianBlur3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
Creates a copy
Clij2GenerateBinaryOverlapMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateBinaryOverlapMatrix
Clij2GenerateBinaryOverlapMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix
Creates a new instance
Clij2GenerateBinaryOverlapMatrix(Clij2GenerateBinaryOverlapMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix
Creates a copy
Clij2GenerateDistanceMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateDistanceMatrix
Clij2GenerateDistanceMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix
Creates a new instance
Clij2GenerateDistanceMatrix(Clij2GenerateDistanceMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix
Creates a copy
Clij2GenerateJaccardIndexMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateJaccardIndexMatrix
Clij2GenerateJaccardIndexMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix
Creates a new instance
Clij2GenerateJaccardIndexMatrix(Clij2GenerateJaccardIndexMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix
Creates a copy
Clij2GenerateParametricImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateParametricImage
Clij2GenerateParametricImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage
Creates a new instance
Clij2GenerateParametricImage(Clij2GenerateParametricImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage
Creates a copy
Clij2GenerateParametricImageFromResultsTableColumn - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateParametricImageFromResultsTableColumn
Clij2GenerateParametricImageFromResultsTableColumn(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn
Creates a new instance
Clij2GenerateParametricImageFromResultsTableColumn(Clij2GenerateParametricImageFromResultsTableColumn) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn
Creates a copy
Clij2GenerateTouchCountMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateTouchCountMatrix
Clij2GenerateTouchCountMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix
Creates a new instance
Clij2GenerateTouchCountMatrix(Clij2GenerateTouchCountMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix
Creates a copy
Clij2GenerateTouchMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GenerateTouchMatrix
Clij2GenerateTouchMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix
Creates a new instance
Clij2GenerateTouchMatrix(Clij2GenerateTouchMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix
Creates a copy
Clij2GetJaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GetJaccardIndex
Clij2GetJaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex
Creates a new instance
Clij2GetJaccardIndex(Clij2GetJaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex
Creates a copy
Clij2GetMeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GetMeanSquaredError
Clij2GetMeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError
Creates a new instance
Clij2GetMeanSquaredError(Clij2GetMeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError
Creates a copy
Clij2GetSorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GetSorensenDiceCoefficient
Clij2GetSorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient
Creates a new instance
Clij2GetSorensenDiceCoefficient(Clij2GetSorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient
Creates a copy
Clij2GradientX - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GradientX
Clij2GradientX(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX
Creates a new instance
Clij2GradientX(Clij2GradientX) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX
Creates a copy
Clij2GradientY - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GradientY
Clij2GradientY(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY
Creates a new instance
Clij2GradientY(Clij2GradientY) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY
Creates a copy
Clij2GradientZ - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GradientZ
Clij2GradientZ(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ
Creates a new instance
Clij2GradientZ(Clij2GradientZ) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ
Creates a copy
Clij2Greater - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Greater
Clij2Greater(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater
Creates a new instance
Clij2Greater(Clij2Greater) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater
Creates a copy
Clij2GreaterConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GreaterConstant
Clij2GreaterConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant
Creates a new instance
Clij2GreaterConstant(Clij2GreaterConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant
Creates a copy
Clij2GreaterOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GreaterOrEqual
Clij2GreaterOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual
Creates a new instance
Clij2GreaterOrEqual(Clij2GreaterOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual
Creates a copy
Clij2GreaterOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from GreaterOrEqualConstant
Clij2GreaterOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant
Creates a new instance
Clij2GreaterOrEqualConstant(Clij2GreaterOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant
Creates a copy
Clij2Histogram - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Histogram
Clij2Histogram(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram
Creates a new instance
Clij2Histogram(Clij2Histogram) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram
Creates a copy
Clij2ImageToStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ImageToStack
Clij2ImageToStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack
Creates a new instance
Clij2ImageToStack(Clij2ImageToStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack
Creates a copy
Clij2Invert - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Invert
Clij2Invert(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert
Creates a new instance
Clij2Invert(Clij2Invert) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert
Creates a copy
Clij2JaccardIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from JaccardIndex
Clij2JaccardIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex
Creates a new instance
Clij2JaccardIndex(Clij2JaccardIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex
Creates a copy
Clij2LabelCentroidsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LabelCentroidsToPointList
Clij2LabelCentroidsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList
Creates a new instance
Clij2LabelCentroidsToPointList(Clij2LabelCentroidsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList
Creates a copy
Clij2LabelledSpotsToPointList - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LabelledSpotsToPointList
Clij2LabelledSpotsToPointList(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList
Creates a new instance
Clij2LabelledSpotsToPointList(Clij2LabelledSpotsToPointList) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList
Creates a copy
Clij2LabelSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LabelSpots
Clij2LabelSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots
Creates a new instance
Clij2LabelSpots(Clij2LabelSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots
Creates a copy
Clij2LabelToMask - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LabelToMask
Clij2LabelToMask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask
Creates a new instance
Clij2LabelToMask(Clij2LabelToMask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask
Creates a copy
Clij2LabelVoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LabelVoronoiOctagon
Clij2LabelVoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon
Creates a new instance
Clij2LabelVoronoiOctagon(Clij2LabelVoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon
Creates a copy
Clij2LaplaceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LaplaceBox
Clij2LaplaceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox
Creates a new instance
Clij2LaplaceBox(Clij2LaplaceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox
Creates a copy
Clij2LaplaceDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LaplaceDiamond
Clij2LaplaceDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond
Creates a new instance
Clij2LaplaceDiamond(Clij2LaplaceDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond
Creates a copy
Clij2LocalThreshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from LocalThreshold
Clij2LocalThreshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold
Creates a new instance
Clij2LocalThreshold(Clij2LocalThreshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold
Creates a copy
Clij2Logarithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Logarithm
Clij2Logarithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm
Creates a new instance
Clij2Logarithm(Clij2Logarithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm
Creates a copy
Clij2Mask - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Mask
Clij2Mask(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask
Creates a new instance
Clij2Mask(Clij2Mask) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask
Creates a copy
Clij2MaskLabel - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaskLabel
Clij2MaskLabel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel
Creates a new instance
Clij2MaskLabel(Clij2MaskLabel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel
Creates a copy
Clij2MaskStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaskStackWithPlane
Clij2MaskStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane
Creates a new instance
Clij2MaskStackWithPlane(Clij2MaskStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane
Creates a copy
Clij2Maximum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Maximum2DBox
Clij2Maximum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
Creates a new instance
Clij2Maximum2dBox(Clij2Maximum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
Creates a copy
Clij2Maximum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Maximum2DSphere
Clij2Maximum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
Creates a new instance
Clij2Maximum2dSphere(Clij2Maximum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
Creates a copy
Clij2Maximum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Maximum3DBox
Clij2Maximum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
Creates a new instance
Clij2Maximum3dBox(Clij2Maximum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
Creates a copy
Clij2Maximum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Maximum3DSphere
Clij2Maximum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
Creates a new instance
Clij2Maximum3dSphere(Clij2Maximum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
Creates a copy
Clij2MaximumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumImageAndScalar
Clij2MaximumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar
Creates a new instance
Clij2MaximumImageAndScalar(Clij2MaximumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar
Creates a copy
Clij2MaximumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumImages
Clij2MaximumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages
Creates a new instance
Clij2MaximumImages(Clij2MaximumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages
Creates a copy
Clij2MaximumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumOctagon
Clij2MaximumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon
Creates a new instance
Clij2MaximumOctagon(Clij2MaximumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon
Creates a copy
Clij2MaximumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumOfMaskedPixels
Clij2MaximumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels
Creates a new instance
Clij2MaximumOfMaskedPixels(Clij2MaximumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels
Creates a copy
Clij2MaximumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumOfTouchingNeighbors
Clij2MaximumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors
Creates a new instance
Clij2MaximumOfTouchingNeighbors(Clij2MaximumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors
Creates a copy
Clij2MaximumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumSliceBySliceSphere
Clij2MaximumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
Creates a new instance
Clij2MaximumSliceBySliceSphere(Clij2MaximumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
Creates a copy
Clij2MaximumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumXProjection
Clij2MaximumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection
Creates a new instance
Clij2MaximumXProjection(Clij2MaximumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection
Creates a copy
Clij2MaximumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumYProjection
Clij2MaximumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection
Creates a new instance
Clij2MaximumYProjection(Clij2MaximumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection
Creates a copy
Clij2MaximumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumZProjection
Clij2MaximumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection
Creates a new instance
Clij2MaximumZProjection(Clij2MaximumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection
Creates a copy
Clij2MaximumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MaximumZProjectionBounded
Clij2MaximumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
Creates a new instance
Clij2MaximumZProjectionBounded(Clij2MaximumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
Creates a copy
Clij2Mean2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Mean2DBox
Clij2Mean2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
Creates a new instance
Clij2Mean2dBox(Clij2Mean2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
Creates a copy
Clij2Mean2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Mean2DSphere
Clij2Mean2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
Creates a new instance
Clij2Mean2dSphere(Clij2Mean2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
Creates a copy
Clij2Mean3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Mean3DBox
Clij2Mean3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
Creates a new instance
Clij2Mean3dBox(Clij2Mean3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
Creates a copy
Clij2Mean3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Mean3DSphere
Clij2Mean3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
Creates a new instance
Clij2Mean3dSphere(Clij2Mean3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
Creates a copy
Clij2MeanClosestSpotDistance - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanClosestSpotDistance
Clij2MeanClosestSpotDistance(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance
Creates a new instance
Clij2MeanClosestSpotDistance(Clij2MeanClosestSpotDistance) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance
Creates a copy
Clij2MeanOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanOfMaskedPixels
Clij2MeanOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels
Creates a new instance
Clij2MeanOfMaskedPixels(Clij2MeanOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels
Creates a copy
Clij2MeanOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanOfTouchingNeighbors
Clij2MeanOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors
Creates a new instance
Clij2MeanOfTouchingNeighbors(Clij2MeanOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors
Creates a copy
Clij2MeanSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanSliceBySliceSphere
Clij2MeanSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
Creates a new instance
Clij2MeanSliceBySliceSphere(Clij2MeanSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
Creates a copy
Clij2MeanSquaredError - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanSquaredError
Clij2MeanSquaredError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError
Creates a new instance
Clij2MeanSquaredError(Clij2MeanSquaredError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError
Creates a copy
Clij2MeanXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanXProjection
Clij2MeanXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection
Creates a new instance
Clij2MeanXProjection(Clij2MeanXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection
Creates a copy
Clij2MeanYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanYProjection
Clij2MeanYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection
Creates a new instance
Clij2MeanYProjection(Clij2MeanYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection
Creates a copy
Clij2MeanZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanZProjection
Clij2MeanZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection
Creates a new instance
Clij2MeanZProjection(Clij2MeanZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection
Creates a copy
Clij2MeanZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MeanZProjectionBounded
Clij2MeanZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
Creates a new instance
Clij2MeanZProjectionBounded(Clij2MeanZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
Creates a copy
Clij2Median2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Median2DBox
Clij2Median2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
Creates a new instance
Clij2Median2dBox(Clij2Median2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
Creates a copy
Clij2Median2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Median2DSphere
Clij2Median2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
Creates a new instance
Clij2Median2dSphere(Clij2Median2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
Creates a copy
Clij2Median3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Median3DBox
Clij2Median3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
Creates a new instance
Clij2Median3dBox(Clij2Median3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
Creates a copy
Clij2Median3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Median3DSphere
Clij2Median3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
Creates a new instance
Clij2Median3dSphere(Clij2Median3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
Creates a copy
Clij2MedianOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MedianOfTouchingNeighbors
Clij2MedianOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors
Creates a new instance
Clij2MedianOfTouchingNeighbors(Clij2MedianOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors
Creates a copy
Clij2MedianSliceBySliceBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MedianSliceBySliceBox
Clij2MedianSliceBySliceBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
Creates a new instance
Clij2MedianSliceBySliceBox(Clij2MedianSliceBySliceBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
Creates a copy
Clij2MedianSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MedianSliceBySliceSphere
Clij2MedianSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
Creates a new instance
Clij2MedianSliceBySliceSphere(Clij2MedianSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
Creates a copy
Clij2MedianZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MedianZProjection
Clij2MedianZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection
Creates a new instance
Clij2MedianZProjection(Clij2MedianZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection
Creates a copy
Clij2Minimum2dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Minimum2DBox
Clij2Minimum2dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
Creates a new instance
Clij2Minimum2dBox(Clij2Minimum2dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
Creates a copy
Clij2Minimum2dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Minimum2DSphere
Clij2Minimum2dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
Creates a new instance
Clij2Minimum2dSphere(Clij2Minimum2dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
Creates a copy
Clij2Minimum3dBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Minimum3DBox
Clij2Minimum3dBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
Creates a new instance
Clij2Minimum3dBox(Clij2Minimum3dBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
Creates a copy
Clij2Minimum3dSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Minimum3DSphere
Clij2Minimum3dSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
Creates a new instance
Clij2Minimum3dSphere(Clij2Minimum3dSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
Creates a copy
Clij2MinimumDistanceOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumDistanceOfTouchingNeighbors
Clij2MinimumDistanceOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors
Creates a new instance
Clij2MinimumDistanceOfTouchingNeighbors(Clij2MinimumDistanceOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors
Creates a copy
Clij2MinimumImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumImageAndScalar
Clij2MinimumImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar
Creates a new instance
Clij2MinimumImageAndScalar(Clij2MinimumImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar
Creates a copy
Clij2MinimumImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumImages
Clij2MinimumImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages
Creates a new instance
Clij2MinimumImages(Clij2MinimumImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages
Creates a copy
Clij2MinimumOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumOctagon
Clij2MinimumOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon
Creates a new instance
Clij2MinimumOctagon(Clij2MinimumOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon
Creates a copy
Clij2MinimumOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumOfMaskedPixels
Clij2MinimumOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels
Creates a new instance
Clij2MinimumOfMaskedPixels(Clij2MinimumOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels
Creates a copy
Clij2MinimumOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumOfTouchingNeighbors
Clij2MinimumOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors
Creates a new instance
Clij2MinimumOfTouchingNeighbors(Clij2MinimumOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors
Creates a copy
Clij2MinimumSliceBySliceSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumSliceBySliceSphere
Clij2MinimumSliceBySliceSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
Creates a new instance
Clij2MinimumSliceBySliceSphere(Clij2MinimumSliceBySliceSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
Creates a copy
Clij2MinimumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumXProjection
Clij2MinimumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection
Creates a new instance
Clij2MinimumXProjection(Clij2MinimumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection
Creates a copy
Clij2MinimumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumYProjection
Clij2MinimumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection
Creates a new instance
Clij2MinimumYProjection(Clij2MinimumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection
Creates a copy
Clij2MinimumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumZProjection
Clij2MinimumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection
Creates a new instance
Clij2MinimumZProjection(Clij2MinimumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection
Creates a copy
Clij2MinimumZProjectionBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumZProjectionBounded
Clij2MinimumZProjectionBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
Creates a new instance
Clij2MinimumZProjectionBounded(Clij2MinimumZProjectionBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
Creates a copy
Clij2MinimumZProjectionThresholdedBounded - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MinimumZProjectionThresholdedBounded
Clij2MinimumZProjectionThresholdedBounded(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
Creates a new instance
Clij2MinimumZProjectionThresholdedBounded(Clij2MinimumZProjectionThresholdedBounded) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
Creates a copy
Clij2MultiplyImageAndCoordinate - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyImageAndCoordinate
Clij2MultiplyImageAndCoordinate(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate
Creates a new instance
Clij2MultiplyImageAndCoordinate(Clij2MultiplyImageAndCoordinate) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate
Creates a copy
Clij2MultiplyImageAndScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyImageAndScalar
Clij2MultiplyImageAndScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar
Creates a new instance
Clij2MultiplyImageAndScalar(Clij2MultiplyImageAndScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar
Creates a copy
Clij2MultiplyImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyImages
Clij2MultiplyImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages
Creates a new instance
Clij2MultiplyImages(Clij2MultiplyImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages
Creates a copy
Clij2MultiplyImageStackWithScalars - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyImageStackWithScalars
Clij2MultiplyImageStackWithScalars(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars
Creates a new instance
Clij2MultiplyImageStackWithScalars(Clij2MultiplyImageStackWithScalars) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars
Creates a copy
Clij2MultiplyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyMatrix
Clij2MultiplyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix
Creates a new instance
Clij2MultiplyMatrix(Clij2MultiplyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix
Creates a copy
Clij2MultiplyStackWithPlane - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from MultiplyStackWithPlane
Clij2MultiplyStackWithPlane(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane
Creates a new instance
Clij2MultiplyStackWithPlane(Clij2MultiplyStackWithPlane) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane
Creates a copy
Clij2NClosestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NClosestDistances
Clij2NClosestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances
Creates a new instance
Clij2NClosestDistances(Clij2NClosestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances
Creates a copy
Clij2NClosestPoints - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NClosestPoints
Clij2NClosestPoints(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints
Creates a new instance
Clij2NClosestPoints(Clij2NClosestPoints) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints
Creates a copy
Clij2NeighborsOfNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NeighborsOfNeighbors
Clij2NeighborsOfNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors
Creates a new instance
Clij2NeighborsOfNeighbors(Clij2NeighborsOfNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors
Creates a copy
Clij2NonzeroMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NonzeroMaximumBox
Clij2NonzeroMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox
Creates a new instance
Clij2NonzeroMaximumBox(Clij2NonzeroMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox
Creates a copy
Clij2NonzeroMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NonzeroMaximumDiamond
Clij2NonzeroMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond
Creates a new instance
Clij2NonzeroMaximumDiamond(Clij2NonzeroMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond
Creates a copy
Clij2NonzeroMinimumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NonzeroMinimumBox
Clij2NonzeroMinimumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox
Creates a new instance
Clij2NonzeroMinimumBox(Clij2NonzeroMinimumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox
Creates a copy
Clij2NonzeroMinimumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NonzeroMinimumDiamond
Clij2NonzeroMinimumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond
Creates a new instance
Clij2NonzeroMinimumDiamond(Clij2NonzeroMinimumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond
Creates a copy
Clij2NotEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NotEqual
Clij2NotEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual
Creates a new instance
Clij2NotEqual(Clij2NotEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual
Creates a copy
Clij2NotEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from NotEqualConstant
Clij2NotEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant
Creates a new instance
Clij2NotEqualConstant(Clij2NotEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant
Creates a copy
Clij2OnlyzeroOverwriteMaximumBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumBox
Clij2OnlyzeroOverwriteMaximumBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox
Creates a new instance
Clij2OnlyzeroOverwriteMaximumBox(Clij2OnlyzeroOverwriteMaximumBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox
Creates a copy
Clij2OnlyzeroOverwriteMaximumDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from OnlyzeroOverwriteMaximumDiamond
Clij2OnlyzeroOverwriteMaximumDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond
Creates a new instance
Clij2OnlyzeroOverwriteMaximumDiamond(Clij2OnlyzeroOverwriteMaximumDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond
Creates a copy
Clij2OpeningBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from OpeningBox
Clij2OpeningBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox
Creates a new instance
Clij2OpeningBox(Clij2OpeningBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox
Creates a copy
Clij2OpeningDiamond - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from OpeningDiamond
Clij2OpeningDiamond(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond
Creates a new instance
Clij2OpeningDiamond(Clij2OpeningDiamond) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond
Creates a copy
Clij2Paste2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Paste2D
Clij2Paste2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
Creates a new instance
Clij2Paste2d(Clij2Paste2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
Creates a copy
Clij2Paste3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Paste3D
Clij2Paste3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
Creates a new instance
Clij2Paste3d(Clij2Paste3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
Creates a copy
Clij2PointIndexListToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from PointIndexListToMesh
Clij2PointIndexListToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh
Creates a new instance
Clij2PointIndexListToMesh(Clij2PointIndexListToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh
Creates a copy
Clij2PointlistToLabelledSpots - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from PointlistToLabelledSpots
Clij2PointlistToLabelledSpots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots
Creates a new instance
Clij2PointlistToLabelledSpots(Clij2PointlistToLabelledSpots) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots
Creates a copy
Clij2Power - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Power
Clij2Power(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power
Creates a new instance
Clij2Power(Clij2Power) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power
Creates a copy
Clij2PowerImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from PowerImages
Clij2PowerImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages
Creates a new instance
Clij2PowerImages(Clij2PowerImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages
Creates a copy
Clij2PullToResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from PullToResultsTable
Clij2PullToResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable
Creates a new instance
Clij2PullToResultsTable(Clij2PullToResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable
Creates a copy
Clij2PushResultsTable - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from PushResultsTable
Clij2PushResultsTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable
Creates a new instance
Clij2PushResultsTable(Clij2PushResultsTable) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable
Creates a copy
Clij2ReduceStack - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ReduceStack
Clij2ReduceStack(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
Creates a new instance
Clij2ReduceStack(Clij2ReduceStack) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
Creates a copy
Clij2ReplaceIntensities - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ReplaceIntensities
Clij2ReplaceIntensities(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities
Creates a new instance
Clij2ReplaceIntensities(Clij2ReplaceIntensities) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities
Creates a copy
Clij2ReplaceIntensity - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ReplaceIntensity
Clij2ReplaceIntensity(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
Creates a new instance
Clij2ReplaceIntensity(Clij2ReplaceIntensity) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
Creates a copy
Clij2ReplacePixelsIfZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ReplacePixelsIfZero
Clij2ReplacePixelsIfZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero
Creates a new instance
Clij2ReplacePixelsIfZero(Clij2ReplacePixelsIfZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero
Creates a copy
Clij2ResliceBottom - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ResliceBottom
Clij2ResliceBottom(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom
Creates a new instance
Clij2ResliceBottom(Clij2ResliceBottom) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom
Creates a copy
Clij2ResliceLeft - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ResliceLeft
Clij2ResliceLeft(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft
Creates a new instance
Clij2ResliceLeft(Clij2ResliceLeft) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft
Creates a copy
Clij2ResliceRadial - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ResliceRadial
Clij2ResliceRadial(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
Creates a new instance
Clij2ResliceRadial(Clij2ResliceRadial) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
Creates a copy
Clij2ResliceRight - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ResliceRight
Clij2ResliceRight(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight
Creates a new instance
Clij2ResliceRight(Clij2ResliceRight) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight
Creates a copy
Clij2ResliceTop - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ResliceTop
Clij2ResliceTop(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop
Creates a new instance
Clij2ResliceTop(Clij2ResliceTop) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop
Creates a copy
Clij2RotateClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from RotateClockwise
Clij2RotateClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise
Creates a new instance
Clij2RotateClockwise(Clij2RotateClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise
Creates a copy
Clij2RotateCounterClockwise - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from RotateCounterClockwise
Clij2RotateCounterClockwise(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise
Creates a new instance
Clij2RotateCounterClockwise(Clij2RotateCounterClockwise) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise
Creates a copy
Clij2Scale2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Scale2D
Clij2Scale2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
Creates a new instance
Clij2Scale2d(Clij2Scale2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
Creates a copy
Clij2Scale3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Scale3D
Clij2Scale3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
Creates a new instance
Clij2Scale3d(Clij2Scale3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
Creates a copy
Clij2SetNonZeroPixelsToPixelIndex - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SetNonZeroPixelsToPixelIndex
Clij2SetNonZeroPixelsToPixelIndex(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex
Creates a new instance
Clij2SetNonZeroPixelsToPixelIndex(Clij2SetNonZeroPixelsToPixelIndex) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex
Creates a copy
Clij2ShortestDistances - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ShortestDistances
Clij2ShortestDistances(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances
Creates a new instance
Clij2ShortestDistances(Clij2ShortestDistances) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances
Creates a copy
Clij2Smaller - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Smaller
Clij2Smaller(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller
Creates a new instance
Clij2Smaller(Clij2Smaller) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller
Creates a copy
Clij2SmallerConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SmallerConstant
Clij2SmallerConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant
Creates a new instance
Clij2SmallerConstant(Clij2SmallerConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant
Creates a copy
Clij2SmallerOrEqual - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SmallerOrEqual
Clij2SmallerOrEqual(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual
Creates a new instance
Clij2SmallerOrEqual(Clij2SmallerOrEqual) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual
Creates a copy
Clij2SmallerOrEqualConstant - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SmallerOrEqualConstant
Clij2SmallerOrEqualConstant(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant
Creates a new instance
Clij2SmallerOrEqualConstant(Clij2SmallerOrEqualConstant) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant
Creates a copy
Clij2Sobel - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Sobel
Clij2Sobel(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel
Creates a new instance
Clij2Sobel(Clij2Sobel) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel
Creates a copy
Clij2SorensenDiceCoefficient - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SorensenDiceCoefficient
Clij2SorensenDiceCoefficient(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient
Creates a new instance
Clij2SorensenDiceCoefficient(Clij2SorensenDiceCoefficient) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient
Creates a copy
Clij2SpotsToPointList1 - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SpotsToPointList
Clij2SpotsToPointList1(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1
Creates a new instance
Clij2SpotsToPointList1(Clij2SpotsToPointList1) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1
Creates a copy
Clij2SquaredDifference - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SquaredDifference
Clij2SquaredDifference(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference
Creates a new instance
Clij2SquaredDifference(Clij2SquaredDifference) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference
Creates a copy
Clij2StandardDeviationOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StandardDeviationOfMaskedPixels
Clij2StandardDeviationOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels
Creates a new instance
Clij2StandardDeviationOfMaskedPixels(Clij2StandardDeviationOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels
Creates a copy
Clij2StandardDeviationOfTouchingNeighbors - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StandardDeviationOfTouchingNeighbors
Clij2StandardDeviationOfTouchingNeighbors(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors
Creates a new instance
Clij2StandardDeviationOfTouchingNeighbors(Clij2StandardDeviationOfTouchingNeighbors) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors
Creates a copy
Clij2StandardDeviationZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StandardDeviationZProjection
Clij2StandardDeviationZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection
Creates a new instance
Clij2StandardDeviationZProjection(Clij2StandardDeviationZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection
Creates a copy
Clij2StatisticsOfBackgroundAndLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StatisticsOfBackgroundAndLabelledPixels
Clij2StatisticsOfBackgroundAndLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels
Creates a new instance
Clij2StatisticsOfBackgroundAndLabelledPixels(Clij2StatisticsOfBackgroundAndLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels
Creates a copy
Clij2StatisticsOfImage - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StatisticsOfImage
Clij2StatisticsOfImage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage
Creates a new instance
Clij2StatisticsOfImage(Clij2StatisticsOfImage) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage
Creates a copy
Clij2StatisticsOfLabelledPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from StatisticsOfLabelledPixels
Clij2StatisticsOfLabelledPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels
Creates a new instance
Clij2StatisticsOfLabelledPixels(Clij2StatisticsOfLabelledPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels
Creates a copy
Clij2SubtractImageFromScalar - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SubtractImageFromScalar
Clij2SubtractImageFromScalar(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar
Creates a new instance
Clij2SubtractImageFromScalar(Clij2SubtractImageFromScalar) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar
Creates a copy
Clij2SubtractImages - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SubtractImages
Clij2SubtractImages(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages
Creates a new instance
Clij2SubtractImages(Clij2SubtractImages) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages
Creates a copy
Clij2SumImageSliceBySlice - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SumImageSliceBySlice
Clij2SumImageSliceBySlice(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice
Creates a new instance
Clij2SumImageSliceBySlice(Clij2SumImageSliceBySlice) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice
Creates a copy
Clij2SumXProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SumXProjection
Clij2SumXProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection
Creates a new instance
Clij2SumXProjection(Clij2SumXProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection
Creates a copy
Clij2SumYProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SumYProjection
Clij2SumYProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection
Creates a new instance
Clij2SumYProjection(Clij2SumYProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection
Creates a copy
Clij2SumZProjection - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from SumZProjection
Clij2SumZProjection(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection
Creates a new instance
Clij2SumZProjection(Clij2SumZProjection) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection
Creates a copy
Clij2Threshold - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Threshold
Clij2Threshold(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold
Creates a new instance
Clij2Threshold(Clij2Threshold) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold
Creates a copy
Clij2ThresholdDefault - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdDefault
Clij2ThresholdDefault(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault
Creates a new instance
Clij2ThresholdDefault(Clij2ThresholdDefault) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault
Creates a copy
Clij2ThresholdHuang - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdHuang
Clij2ThresholdHuang(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang
Creates a new instance
Clij2ThresholdHuang(Clij2ThresholdHuang) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang
Creates a copy
Clij2ThresholdIjIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdIJ_IsoData
Clij2ThresholdIjIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData
Creates a new instance
Clij2ThresholdIjIsoData(Clij2ThresholdIjIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData
Creates a copy
Clij2ThresholdIntermodes - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdIntermodes
Clij2ThresholdIntermodes(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes
Creates a new instance
Clij2ThresholdIntermodes(Clij2ThresholdIntermodes) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes
Creates a copy
Clij2ThresholdIsoData - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdIsoData
Clij2ThresholdIsoData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData
Creates a new instance
Clij2ThresholdIsoData(Clij2ThresholdIsoData) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData
Creates a copy
Clij2ThresholdLi - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdLi
Clij2ThresholdLi(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi
Creates a new instance
Clij2ThresholdLi(Clij2ThresholdLi) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi
Creates a copy
Clij2ThresholdMaxEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdMaxEntropy
Clij2ThresholdMaxEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy
Creates a new instance
Clij2ThresholdMaxEntropy(Clij2ThresholdMaxEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy
Creates a copy
Clij2ThresholdMean - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdMean
Clij2ThresholdMean(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean
Creates a new instance
Clij2ThresholdMean(Clij2ThresholdMean) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean
Creates a copy
Clij2ThresholdMinError - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdMinError
Clij2ThresholdMinError(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError
Creates a new instance
Clij2ThresholdMinError(Clij2ThresholdMinError) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError
Creates a copy
Clij2ThresholdMinimum - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdMinimum
Clij2ThresholdMinimum(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum
Creates a new instance
Clij2ThresholdMinimum(Clij2ThresholdMinimum) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum
Creates a copy
Clij2ThresholdMoments - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdMoments
Clij2ThresholdMoments(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments
Creates a new instance
Clij2ThresholdMoments(Clij2ThresholdMoments) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments
Creates a copy
Clij2ThresholdOtsu - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdOtsu
Clij2ThresholdOtsu(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu
Creates a new instance
Clij2ThresholdOtsu(Clij2ThresholdOtsu) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu
Creates a copy
Clij2ThresholdPercentile - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdPercentile
Clij2ThresholdPercentile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile
Creates a new instance
Clij2ThresholdPercentile(Clij2ThresholdPercentile) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile
Creates a copy
Clij2ThresholdRenyiEntropy - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdRenyiEntropy
Clij2ThresholdRenyiEntropy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy
Creates a new instance
Clij2ThresholdRenyiEntropy(Clij2ThresholdRenyiEntropy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy
Creates a copy
Clij2ThresholdShanbhag - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdShanbhag
Clij2ThresholdShanbhag(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag
Creates a new instance
Clij2ThresholdShanbhag(Clij2ThresholdShanbhag) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag
Creates a copy
Clij2ThresholdTriangle - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdTriangle
Clij2ThresholdTriangle(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle
Creates a new instance
Clij2ThresholdTriangle(Clij2ThresholdTriangle) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle
Creates a copy
Clij2ThresholdYen - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from ThresholdYen
Clij2ThresholdYen(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen
Creates a new instance
Clij2ThresholdYen(Clij2ThresholdYen) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen
Creates a copy
Clij2TopHatBox - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TopHatBox
Clij2TopHatBox(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
Creates a new instance
Clij2TopHatBox(Clij2TopHatBox) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
Creates a copy
Clij2TopHatSphere - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TopHatSphere
Clij2TopHatSphere(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
Creates a new instance
Clij2TopHatSphere(Clij2TopHatSphere) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
Creates a copy
Clij2TouchMatrixToAdjacencyMatrix - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TouchMatrixToAdjacencyMatrix
Clij2TouchMatrixToAdjacencyMatrix(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix
Creates a new instance
Clij2TouchMatrixToAdjacencyMatrix(Clij2TouchMatrixToAdjacencyMatrix) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix
Creates a copy
Clij2TouchMatrixToMesh - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TouchMatrixToMesh
Clij2TouchMatrixToMesh(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh
Creates a new instance
Clij2TouchMatrixToMesh(Clij2TouchMatrixToMesh) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh
Creates a copy
Clij2Translate2d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Translate2D
Clij2Translate2d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
Creates a new instance
Clij2Translate2d(Clij2Translate2d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
Creates a copy
Clij2Translate3d - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Translate3D
Clij2Translate3d(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
Creates a new instance
Clij2Translate3d(Clij2Translate3d) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
Creates a copy
Clij2TransposeXy - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TransposeXY
Clij2TransposeXy(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy
Creates a new instance
Clij2TransposeXy(Clij2TransposeXy) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy
Creates a copy
Clij2TransposeXz - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TransposeXZ
Clij2TransposeXz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz
Creates a new instance
Clij2TransposeXz(Clij2TransposeXz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz
Creates a copy
Clij2TransposeYz - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from TransposeYZ
Clij2TransposeYz(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz
Creates a new instance
Clij2TransposeYz(Clij2TransposeYz) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz
Creates a copy
Clij2UndefinedToZero - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from UndefinedToZero
Clij2UndefinedToZero(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero
Creates a new instance
Clij2UndefinedToZero(Clij2UndefinedToZero) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero
Creates a copy
Clij2VarianceOfMaskedPixels - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from VarianceOfMaskedPixels
Clij2VarianceOfMaskedPixels(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels
Creates a new instance
Clij2VarianceOfMaskedPixels(Clij2VarianceOfMaskedPixels) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels
Creates a copy
Clij2VoronoiLabeling - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from VoronoiLabeling
Clij2VoronoiLabeling(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling
Creates a new instance
Clij2VoronoiLabeling(Clij2VoronoiLabeling) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling
Creates a copy
Clij2VoronoiOctagon - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from VoronoiOctagon
Clij2VoronoiOctagon(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon
Creates a new instance
Clij2VoronoiOctagon(Clij2VoronoiOctagon) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon
Creates a copy
Clij2Watershed - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from Watershed
Clij2Watershed(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed
Creates a new instance
Clij2Watershed(Clij2Watershed) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed
Creates a copy
Clij2WriteValuesToPositions - Class in org.hkijena.jipipe.extensions.clij2.algorithms
CLIJ2 algorithm ported from WriteValuesToPositions
Clij2WriteValuesToPositions(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions
Creates a new instance
Clij2WriteValuesToPositions(Clij2WriteValuesToPositions) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions
Creates a copy
CLIJControlPanel - Class in org.hkijena.jipipe.extensions.clij2.ui
Graphical control panel for CLIJ
CLIJControlPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanel
 
CLIJControlPanelMenuExtension - Class in org.hkijena.jipipe.extensions.clij2.ui
Adds a menu item that allows to control CLIJ
CLIJControlPanelMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanelMenuExtension
Creates a new instance
CLIJExtension - Class in org.hkijena.jipipe.extensions.clij2
Integrates CLIJ
CLIJExtension() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
CLIJImageData - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Contains a CLIJ image
CLIJImageData(ClearCLBuffer) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes a new instance from an existing buffer
CLIJImageData(ImagePlusData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes an instance by copying data from ImagePlusData
CLIJImageData(CLIJImageData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Makes a copy
CLIJImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Adapter for CLIJImageData
CLIJImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
CLIJImageToImagePlusDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Converter from CLIJImageData to ImagePlusData
CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
CLIJSettings - Class in org.hkijena.jipipe.extensions.clij2
Settings for CLIJ
CLIJSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
cloneTableModel(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils
Copies a table
close() - Method in class org.hkijena.jipipe.utils.BusyCursor
 
CloseAllImageJWindowsTool - Class in org.hkijena.jipipe.extensions.tools
 
CloseAllImageJWindowsTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CloseAllImageJWindowsTool
Creates a new instance
closeAllTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Closes all tabs
closeMessage() - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
closeTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Closes the tab.
collapse(IOInterfaceAlgorithm) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Removes the interface and directly connects the inputs and outputs
CollapseIOInterfaceNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
CollapseIOInterfaceNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
COLOR_CONSTANT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
COLOR_FUNCTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
COLOR_MAP - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
COLOR_OPERATOR - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
COLOR_SELECTED - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
COLOR_STRING - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
COLOR_UNSELECTED - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
COLOR_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
ColorChooserButton - Class in org.hkijena.jipipe.ui.components
 
ColorChooserButton() - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorChooserButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorDeserializer - Class in org.hkijena.jipipe.extensions.parameters.colors
Deserializer for Color
ColorDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer
 
ColorIcon - Class in org.hkijena.jipipe.ui.components
Icon that is only one specific color, including border
ColorIcon() - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon
Creates a 16x16 black icon
ColorIcon(int, int) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon
Creates a black icon
ColorIcon(int, int, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon
Creates an icon with black borders
ColorIcon(int, int, Color, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorIcon
 
ColorMap - Enum in org.hkijena.jipipe.extensions.parameters.colors
All available color maps
ColorMap - Enum in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.colors
EnumItemInfo implementation for ColorMap
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo
Creates a new instance
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.parameters.colors
Icon that renders a color map entry
ColorMapIcon() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
Creates a 16x16 black icon
ColorMapIcon(int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
Creates a viridis icon
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
ColorMapSupplier - Class in org.hkijena.jipipe.extensions.plots.utils
Provides a color palette
ColorMapSupplier(Paint[]) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
ColorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.colors
Parameter editor for String
ColorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI
 
ColorRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ColorRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorRoiByStatisticsAlgorithm(ColorRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorSerializer - Class in org.hkijena.jipipe.extensions.parameters.colors
Serializer for Color
ColorSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer
 
colorToHexString(Color) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Converts a color to a Hex string
colorToHexString(Color) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Converts a color to a Hex string
ColorUtils - Class in org.hkijena.jipipe.utils
 
ColorUtils() - Constructor for class org.hkijena.jipipe.utils.ColorUtils
 
column - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
ColumnContentType - Enum in org.hkijena.jipipe.extensions.tables
Available column content types
ColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
An operation on a TableColumn
ColumnOperationAdapterFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
ColumnOperationAdapterFunction(ColumnOperation, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction
 
ColumnOperationEntry(String, ColumnOperation, String, String, String) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
Creates a new entry
ColumnsToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
 
ColumnsToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
ColumnsToAnnotationsAlgorithm(ColumnsToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
CombineChannelsToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
CombineChannelsToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm
 
CombineChannelsToRGBAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm
 
combineSlices(Map<ImageSliceIndex, ImageProcessor>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Combines the slices in the map into one image.
compare(Object, Object) - Method in class org.hkijena.jipipe.utils.NaturalOrderComparator
 
comparePlugins(PluginInfo<?>, PluginInfo<?>) - Static method in class org.hkijena.jipipe.JIPipe
Compares two plugins and sorts them by priority
comparePriority(JIPipeParameterAccess, JIPipeParameterAccess) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Compares the priority
compareTo(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
compareTo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
compareTo(JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
compareTo(JIPipeParameterTypeInfo) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
compareTo(ImageJUtils.GradientStop) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop
 
compareTo(RankedData<T>) - Method in class org.hkijena.jipipe.utils.RankedData
 
COMPARTMENT_DEFAULT - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
CompartmentAddedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent
 
CompartmentNodeTypeCategory - Class in org.hkijena.jipipe.api.compartments.algorithms
 
CompartmentNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
CompartmentRemovedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent
 
CompartmentRenamedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRenamedEvent
 
composeInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>, Map<JIPipeDataInfo, JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates the composition of two inheritance conversions.
composeRawInheritanceConversions(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates the composition of two inheritance conversions.
CompoundGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
CompoundGraphHistorySnapshot(List<JIPipeAlgorithmGraphHistorySnapshot>) - Constructor for class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot
 
ConcatenateByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenateByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
 
ConcatenateByParameter(ConcatenateByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
Copies the algorithm
ConcatenatePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenatePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
 
ConcatenatePaths(ConcatenatePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
Copies the algorithm
ConfirmingButton - Class in org.hkijena.jipipe.ui.components
Button that shows a nice confirmation of some action taken
ConfirmingButton() - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton
Creates a button
ConfirmingButton(Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton
 
ConfirmingButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton
 
ConfirmingButton(Action) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton
 
ConfirmingButton(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.ConfirmingButton
 
confirmResetParameters(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
ConflictDialog - Class in org.hkijena.jipipe.ui.ijupdater
Copy of ConflictDialog because the original one expects an UpdaterFrame
ConflictDialog(Window, String) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflictList - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflicts - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
connect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connectCompartments(JIPipeProjectCompartment, JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject
Connects two compartments
connectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Connects the two slots
CONSTANT_E - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
CONSTANT_FALSE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
CONSTANT_PI - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
CONSTANT_TAU - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
CONSTANT_TRUE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns true if the column exists
containsEquivalentOf(JIPipeGraphNode, JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if this graph contains an algorithm with the same ID as the foreign algorithm in the foreign graph
containsKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Returns true if there is a parameter with given key
containsNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if this graph contains the algorithm
containsNode(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the slot is in this graph
containsOnlyRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Returns if this ROI list only contains ROI of given type
ContainsOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator
 
ContainsOperator2 - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator2() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2
 
ContainsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ContainsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction
 
context() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
context() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
context() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
ContextAction(Object, Method, URL, JIPipeDocumentation) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
convert(JIPipeData) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter
Converts the supported input type to the output type
convert(JIPipeData, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Converts the input data to the output data type
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
ConvertAnnotationTableToAnnotatedTables - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
ConvertAnnotationTableToAnnotatedTables(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables
Creates a new instance
ConvertAnnotationTableToAnnotatedTables(ConvertAnnotationTableToAnnotatedTables) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables
Creates a copy
ConvertColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
ConvertColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
Creates a new instance
ConvertColumnsAlgorithm(ConvertColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
Creates a copy
ConvertDataToOutputPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConvertDataToOutputPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
 
ConvertDataToOutputPath(ConvertDataToOutputPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
Copies the algorithm
ConverterAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
Algorithm that converts any type to any other type
ConverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
convertGlobToRegex(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Converts a standard POSIX Shell globbing pattern into a regular expression pattern.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
Converts an ImagePlus to the color space of this data.
convertIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
Converts an ImagePlus to the color space of this data.
convertImageJToJIPipe(Object) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Converts an ImageJ data type to its corresponding JIPipe type
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
Converts ImagePlus to an ImagePlusData instance.
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
Converts ImagePlus to an ImagePlusData instance.
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
Converts ResultsTable to ResultsTableData.
convertImageJToJIPipe(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
Converts a RoiManager to ROIListData.
ConvertingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
A column operation that returns an output that has the same size as the input
ConvertingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors
A parameter that models processing an input column via an conversion function and generating an output column
ConvertingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
ConvertingTableColumnProcessorParameter(ConvertingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
ConvertingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
 
ConvertingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList
Creates a new instance
ConvertingTableColumnProcessorParameterList(ConvertingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList
Creates a copy
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Converts a JIPipe data type to its corresponding ImageJ data type
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
convertJIPipeToImageJ(JIPipeData, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
convertMergingToSingleDataBatches(List<JIPipeMergingDataBatch>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
Builds a single data batch where each slot only can have one row
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Converts multiple JIPipe data to their corresponding ImageJ data type.
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
convertMultipleJIPipeToImageJ(List<JIPipeData>, boolean, boolean, String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
ConvertToAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Removes a specified annotation
ConvertToAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
ConvertToAnnotationTable(ConvertToAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
Copies the algorithm
convertToNumericColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts the column into a numeric column.
convertToSameTypeIfNeeded(ImagePlus, ImagePlus, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts this image to the same type as the other one if needed
convertToStringColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts the column into a string column.
ConvolveByImage2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
Wrapper around Convolver
ConvolveByImage2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
Instantiates a new node type.
ConvolveByImage2DAlgorithm(ConvolveByImage2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
Creates a copy
ConvolveByParameter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
Wrapper around Convolver
ConvolveByParameter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
Instantiates a new node type.
ConvolveByParameter2DAlgorithm(ConvolveByParameter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
Creates a copy
CopyContainingFolderDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data
Import operation that copies the containing folder path into the clipboard.
CopyContainingFolderDataImportOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
copyFrom(JIPipeDataByMetadataExporter) - Method in class org.hkijena.jipipe.extensions.settings.DataExporterSettings
Copies parameters into the settings storage
copyMetadata(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Copies additional parameters such as custom names from the other slot
CopyPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
CopyPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
CopyPath(CopyPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
Copies the algorithm
CopyPathDataOperation - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis
 
CopyPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
copySlotConfiguration(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Copies the slot configuration from the other algorithm to this algorithm Override this method for special configuration cases
copyTo(JIPipeDynamicParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Copies the parameter configuration into the target
CoreExtension - Class in org.hkijena.jipipe.extensions.core
The core extension
CoreExtension() - Constructor for class org.hkijena.jipipe.extensions.core.CoreExtension
 
CosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
CosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation
 
countRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Counts all ROIs of given type
createAddSlotButton(JIPipeSlotType) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Function that creates the "Add slot" button
createAnnotation(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
createAnnotation(String[]) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
createAnnotation(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
CreateArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
CreateArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateArrayFunction
 
createBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
Creates a backup
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer
 
createData(Class<T>, Object...) - Static method in class org.hkijena.jipipe.JIPipe
Instantiates a data class with the provided parameters This method is helpful if output data is constructed based on slot types
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
 
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a data set from the current series
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData
Creates a data set from the current series
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData
 
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
Creates a data set from the current series
createDecreaseButton(int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI
 
createDecreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createDesktopImage() - Static method in class org.hkijena.jipipe.utils.ScreenImage
Convenience method to create a BufferedImage of the desktop
CreateDirectory - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
CreateDirectory(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
 
CreateDirectory(CreateDirectory) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
Copies the algorithm
createDummyImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates a 2D 8-bit image that covers the region of all ROI
createDummyImageFor(Collection<ROIListData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates a 2D 8-bit black image that covers the region of all provided ROI
createEditorFor(JIPipeWorkbench, JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Creates editor for the parameter
createExporter(JIPipeProjectWorkbench, NodeGroup, String, String) - Static method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter
Creates a new exporter tab
createGradientLUT(Color, Color) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Creates an HTML table with an icon and text.
createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Creates an HTML table with an icon and text.
createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Creates an HTML table with an icon and text.
createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Creates an HTML table with an icon and text.
createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImage
Create a BufferedImage for Swing components.
createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage
Create a BufferedImage for Swing components.
createImage(Component) - Static method in class org.hkijena.jipipe.utils.ScreenImage
Create a BufferedImage for AWT components.
createImage(Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImage
Create a BufferedImage from a rectangular region on the screen.
createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG
Create a BufferedImage for Swing components.
createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ScreenImageSVG
Create a BufferedImage for Swing components.
createIncreaseButton(int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI
 
createIncreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createInstance(Context) - Static method in class org.hkijena.jipipe.JIPipe
Helper to create JIPipe from a context
CreateLaunchersTool - Class in org.hkijena.jipipe.extensions.tools
 
CreateLaunchersTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CreateLaunchersTool
Creates a new instance
createLayoutManager() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
createLUTFromGradient(List<ImageJUtils.GradientStop>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
CreateMapFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
CreateMapFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateMapFunction
 
createMenuTree(JMenu, Set<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a hierarchy of menus based on the menu paths vector
createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Creates a new entry
createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat
 
createNextButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
createNode(String, Class<T>) - Static method in class org.hkijena.jipipe.JIPipe
Creates a new node instance from its id
createNode(Class<T>) - Static method in class org.hkijena.jipipe.JIPipe
Creates a new node instance from its class.
createOptionsButton() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
CreatePairArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
CreatePairArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreatePairArrayFunction
 
createParameters() - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
createPreviousButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
createProgress() - Static method in class org.hkijena.ijupdatercli.Main
 
createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Same as createIconTextHTMLTable but the icon is on the right side
createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Same as createIconTextHTMLTable but the icon is on the right side
createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Same as createIconTextHTMLTableElement but the icon is on the right side
createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Same as createIconTextHTMLTableElement but the icon is on the right side
createScreenshotPNG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Creates a screenshot of the whole graph compartment
createScreenshotSVG() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Creates a screenshot of the whole graph compartment
createStarRatingLabel(String, double, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a read-only "star-rating" label
createToggleButton() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
createToggleButton() - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
createTransferable(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ArrowLessScrollBarUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
createUndoSnapshot() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
Creates a new 'Undo' point
crop(boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Moves the ROI, so the bounding rectangle is at 0,0
crop() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Sets node positions to make the top left to 0, 0
CropToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
CropToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
CropToRoiAlgorithm(CropToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
CSS_RULES - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader
 
CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI
 
CSS_RULES_DARK - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader
 
CustomBoxAndWhiskerRenderer - Class in org.hkijena.jipipe.extensions.plots.datatypes
A box-and-whisker renderer.
CustomBoxAndWhiskerRenderer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Default constructor.
CustomTabbedPaneUI - Class in org.hkijena.jipipe.ui.theme
MetalTabbedPaneUI without the slants
CustomTabbedPaneUI() - Constructor for class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
CustomTabbedPaneUI.TabbedPaneLayout - Class in org.hkijena.jipipe.ui.theme
This class should be treated as a "protected" inner class.
CutCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
CutCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot
 
CutNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
CutNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot
 

D

DARK_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
DARK_THEME - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
DarkModernMetalTheme - Class in org.hkijena.jipipe.ui.theme
 
DarkModernMetalTheme() - Constructor for class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Creates an instance of OceanTheme
DataBatchAssistantUI - Class in org.hkijena.jipipe.ui.batchassistant
A tool that assists the user in configuring batch generation for JIPipeIteratingAlgorithm and JIPipeMergingAlgorithm
DataBatchAssistantUI(JIPipeProjectWorkbench, JIPipeGraphNode, Runnable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
 
DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
DataBatchGenerationSettings(JIPipeIteratingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
DataBatchGenerationSettings(JIPipeMergingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
DataBatchUI - Class in org.hkijena.jipipe.ui.batchassistant
 
DataBatchUI(JIPipeProjectWorkbench, JIPipeGraphNode, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchUI
 
DataConverterEdge() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge
 
DataExporterSettings - Class in org.hkijena.jipipe.extensions.settings
Settings for default data exporters
DataExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DataExporterSettings
 
DataSlotTableModel(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
Creates a new instance
DataSlotTableModel(JTable, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
Creates a new instance
DataSlotTableUI - Class in org.hkijena.jipipe.ui.batchassistant
UI that displays a JIPipeDataSlot
DataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI
 
DataSlotTableUI.DataSlotTableModel - Class in org.hkijena.jipipe.ui.batchassistant
Wraps around a JIPipeDataSlot to display a "toString" column
DataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.batchassistant
Renders the column header of DataSlotTableUI.DataSlotTableModel
DataSourceNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
DataSourceNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
DataToPreviewAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
 
DataToPreviewAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
DataToPreviewAlgorithm(DataToPreviewAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
DataTypeDeselectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent
 
DatatypeRegisteredEvent(String) - Constructor for class org.hkijena.jipipe.JIPipe.DatatypeRegisteredEvent
 
DataTypeSelectedEvent(JIPipeDataTypePicker, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent
 
deactivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
debug(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
debug(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
DECREASE_DIMENSION_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules convert higher-dimensional data to a lower-dimensional counterpart. 2D data remains 2D data.
DefaultAlgorithmUIActionRequestedEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent
 
DefaultCacheDisplaySettings - Class in org.hkijena.jipipe.extensions.settings
A dynamic settings sheet that lets users select the default cache display
DefaultCacheDisplaySettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings
 
DefaultCacheDisplaySettings(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings
 
DefaultDataDisplayOperation - Class in org.hkijena.jipipe.extensions.core.data
 
DefaultDataDisplayOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
DefaultEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Default implementation of EnumItemInfo
DefaultEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo
 
DefaultExpressionEvaluator - Class in org.hkijena.jipipe.extensions.parameters.expressions
Describes basic properties of a ExpressionParameter
DefaultExpressionEvaluator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
DefaultExpressionEvaluatorSyntaxTokenMaker - Class in org.hkijena.jipipe.extensions.parameters.expressions
Generates tokens for an ExpressionEvaluator instance.
DefaultExpressionEvaluatorSyntaxTokenMaker() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker
 
DefaultExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions
An ExpressionParameter that utilizes the DefaultExpressionEvaluator to generate results
DefaultExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter
 
DefaultExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter
 
DefaultExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter
 
DefaultExpressionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
DefaultExpressionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI
Creates new instance
DefaultJIPipeInputSlot - Class in org.hkijena.jipipe.api.nodes
Default implementation of JIPipeInputSlot
DefaultJIPipeInputSlot(Class<? extends JIPipeData>, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
DefaultJIPipeOutputSlot - Class in org.hkijena.jipipe.api.nodes
Default implementation of JIPipeOutputSlot
DefaultJIPipeOutputSlot(Class<? extends JIPipeData>, String, String, boolean) - Constructor for class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
DefaultResultImporterSettings - Class in org.hkijena.jipipe.extensions.settings
A dynamic settings sheet that lets users select the default importer
DefaultResultImporterSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings
 
DefaultResultImporterSettings(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings
 
DefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
DefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
Instantiates a new node type.
DefineRectangularRoiAlgorithm(DefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
Instantiates a new node type.
DefineTablesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that annotates all data with the same annotation
DefineTablesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm
 
DefineTablesAlgorithm(DefineTablesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm
Copies the algorithm
DegreeToRadiansColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a abs(x) function
DegreeToRadiansColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation
 
DeleteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
DeleteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
DeleteCompartmentUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DeleteCompartmentUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
DeleteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DeleteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
description() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.JIPipeProject.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer
 
deserializeKey(String, DeserializationContext) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer
 
deserializeParametersFromJson(JIPipeParameterCollection, JsonNode, JIPipeValidityReport) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Deserializes parameters from JSON
Deserializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Deserializer
 
Deserializer() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension.Deserializer
 
DespeckleFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
Wrapper around RankFilters
DespeckleFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm
Instantiates a new node type.
DespeckleFilter2DAlgorithm(DespeckleFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm
Instantiates a new node type.
destroy() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Similar to flush(), but only destroys the data.
DIMENSION_OPERATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData
The dimensionality of this data
DIMENSIONALITY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
The dimensionality of this data
disableAutoCalibration() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
DisableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DisableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
disableOnNonMatch() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
Determines if an item should be disabled or removed if it does not match
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
disableOnNonMatch() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
DisablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DisablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
DisableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DisableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
DisableVirtualOutputNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
DisableVirtualOutputNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
disconnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Disconnects an input and an output slot
disconnectAll(JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Completely disconnects a slot
disconnectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Disconnects two slots
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in interface org.hkijena.jipipe.api.data.JIPipeData
This function should display the data in the GUI.
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataDisplayOperation
Shows the data in the UI
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.strings.StringData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
display(String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
display(JIPipeData, String, JIPipeWorkbench, JIPipeDataSource) - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
displayErrors(Exception) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
Adds an exception to the display.
displayErrors(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
Adds a report to the display Does not add the necessary vertical glue.
DisplayRangeCalibrationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
DisplayRangeCalibrationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
DisplayRangeCalibrationAlgorithm(DisplayRangeCalibrationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
dispose() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
dispose() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
DistanceTransformWatershed2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
Wrapper around EDM
DistanceTransformWatershed2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm
Instantiates a new node type.
DistanceTransformWatershed2DAlgorithm(DistanceTransformWatershed2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm
Instantiates a new node type.
DivideByMaximumAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
DivideByMaximumAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
Instantiates a new node type.
DivideByMaximumAlgorithm(DivideByMaximumAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
Instantiates a new node type.
DOCUMENTATION_BELOW - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Flag that indicates that documentation should be shown below if enabled.
DOCUMENTATION_BELOW - Static variable in class org.hkijena.jipipe.ui.components.FormPanel
Flag that indicates that documentation should be shown below if enabled.
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
 
DOCUMENTATION_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
 
DocumentChangeListener - Class in org.hkijena.jipipe.installer.linux.ui.utils
Listener for any changes in a Document
DocumentChangeListener() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener
 
DocumentChangeListener - Class in org.hkijena.jipipe.ui.components
Listener for any changes in a Document
DocumentChangeListener() - Constructor for class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
DocumentedComponent - Class in org.hkijena.jipipe.ui.components
Wrapper around a component that adds a split pane that shows documentation
DocumentedComponent(boolean, MarkdownDocument, Component) - Constructor for class org.hkijena.jipipe.ui.components.DocumentedComponent
 
DocumentTabListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders DocumentTabPane tabs
DocumentTabListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer
Creates a new renderer
DocumentTabPane - Class in org.hkijena.jipipe.ui.components
JTabbedPane with larger tabs, ability to close tabs, singleton tabs that are hidden instead of being closed
DocumentTabPane() - Constructor for class org.hkijena.jipipe.ui.components.DocumentTabPane
Creates a new instance
documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
documentTabPane - Variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
DocumentTabPane.CloseMode - Enum in org.hkijena.jipipe.ui.components
Behavior of the tab close button
DocumentTabPane.DocumentTab - Class in org.hkijena.jipipe.ui.components
Encapsulates a tab
doInBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
doInBackground() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
doInBackground() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
done() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
done() - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
done() - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
done() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
DotSlideshow - Class in org.hkijena.jipipe.utils
 
DotSlideshow() - Constructor for class org.hkijena.jipipe.utils.DotSlideshow
 
DoubleAndDoublePairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames an integer into another integer
DoubleAndDoublePairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter
Creates a new instance
DoubleAndDoublePairParameter(DoubleAndDoublePairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter
Creates a copy
DoubleAndDoublePairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
A collection of multiple DoubleAndDoublePairParameter
DoubleArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables
Converts a column to a table
DoubleArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
DoubleArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes
TableColumn that contains doubles.
DoubleArrayTableColumn(double[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
Creates a new instance
DoubleList - Class in org.hkijena.jipipe.extensions.parameters.primitives
A list of Double
DoubleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList
Creates a new empty list
DoubleList(DoubleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleList
Creates a copy
DoubleParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Double
DoubleParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
DoublePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Double
DoublePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
DoubleRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Double
DoubleRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.DoubleRangeParameterGenerator
Creates a new instance
download(URL, Path, Consumer<Integer>) - Static method in class org.hkijena.jipipe.installer.linux.api.WebUtils
Downloads the URL to the output file
download(URL, Path, Consumer<Integer>) - Static method in class org.hkijena.jipipe.utils.WebUtils
Downloads the URL to the output file
DownloadFilesDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
 
DownloadFilesDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource
 
DownloadFilesDataSource(DownloadFilesDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource
 
DownloadOMEROImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms
 
DownloadOMEROImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
DownloadOMEROImageAlgorithm(DownloadOMEROImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
DownloadOMEROTableAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms
 
DownloadOMEROTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
DownloadOMEROTableAlgorithm(DownloadOMEROTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
dragDropEnd(DragSourceDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragEnter(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragEnter(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragExit(DragSourceEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragExit(DropTargetEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
dragGestureRecognized(DragGestureEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragOver(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dragOver(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
draw(ImageProcessor, ImageSliceIndex, boolean, boolean, boolean, boolean, boolean, boolean, int, Color, Color, Collection<Roi>) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
drawCheck(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
drawCheck(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon
 
drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
drawCurrentSegment(Graphics2D, JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
drawHorizontalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Draws the visual representation of a single data item when the plot has a horizontal orientation.
drawItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Draw a single data item.
drawMask(boolean, boolean, int, ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Draws the ROI over an existing mask image
drawVerticalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, CategoryDataset, int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Draws the visual representation of a single data item when the plot has a vertical orientation.
drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
drop(DropTargetDropEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dropActionChanged(DragSourceDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
 
dropActionChanged(DropTargetDragEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
dummyAccess(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets up a dummy access.
duplicate() - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData
 
duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeData
Duplicates the data
duplicate() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
duplicate() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Creates a deep copy
duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
duplicate() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Copies the algorithm.
duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
 
duplicate(JIPipeGraphNode) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Copies an existing algorithm instance
duplicate(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
duplicate(Object) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
Duplicates the parameter
duplicate() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
duplicate(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
duplicate() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
duplicate(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
duplicate() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.strings.StringData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
duplicate() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
duplicateColumn(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Duplicates a column
duplicateNode(T) - Static method in class org.hkijena.jipipe.JIPipe
Duplicates a JIPipeGraphNode
DynamicCategoryEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.enums
 
DynamicCategoryEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter
Creates a new instance with null value
DynamicCategoryEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter
Creates a copy
DynamicCategoryEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter
Creates a new instance
DynamicCategoryEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.enums
DynamicCategoryEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.enums
DynamicEnumParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter that acts as dynamic enum.
DynamicEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
Creates a new instance with null value
DynamicEnumParameter(T) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
Creates a new instance
DynamicEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
A parameter editor UI that works for all enumerations
DynamicEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI
 
DynamicEnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
Settings for dynamic enum-like parameters for non Enum data types
DynamicSetParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter that acts as dynamic enum where a set of items can be selected Use DynamicEnumParameterSettings to define a supplier for the items.
DynamicSetParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
Creates a new instance with null value
DynamicSetParameter(DynamicSetParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
DynamicSetParameter(Set<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
DynamicSetParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
A parameter editor UI that works for all enumerations
DynamicSetParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI
 
DynamicSetParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
Settings for dynamic enum-like parameters for non Enum data types
DynamicStringEnumParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter that acts as dynamic enum.
DynamicStringEnumParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter
Creates a new instance with null value
DynamicStringEnumParameter(DynamicStringEnumParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter
Creates a copy
DynamicStringEnumParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter
Creates a new instance
DynamicStringEnumParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.primitives
DynamicStringEnumParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.primitives

E

Edge() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge
 
edgeAdded(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
EdgeConnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
EdgeConnectGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
EdgeDisconnectAllTargetsGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
EdgeDisconnectAllTargetsGraphHistorySnapshot(JIPipeGraph, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
EdgeDisconnectGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
EdgeDisconnectGraphHistorySnapshot(JIPipeGraph, Set<JIPipeDataSlot>, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
edgeRemoved(GraphEdgeChangeEvent<V, E>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
EditAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components
UI that edits an existing algorithm slot
EditAlgorithmSlotPanel(JIPipeDataSlot, JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
Creates a new instance
EigenvalueSelection2D - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
Available options to which Eigenvalue to select This is for 2D eigenvalues where two images are generated
ElementAccessOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
ElementAccessOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator
 
EnableNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
EnableNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
EnablePassThroughNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
EnablePassThroughNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
EnableSaveOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
EnableSaveOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
EnableVirtualOutputsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
EnableVirtualOutputsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
endModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Ends a modification block started by beginModificationBlock().
enqueue(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Schedules a new runnable
enqueue(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Schedules a new runnable
enqueueProject(JIPipeProject, Path, int) - Static method in class org.hkijena.jipipe.JIPipe
Runs a project in a different thread.
enqueueProject(JIPipeProject, JIPipeRunSettings) - Static method in class org.hkijena.jipipe.JIPipe
Runs a project in the current thread.
Entry(String, String, String, String, String) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
EntryRankingFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRankingFunction
 
EntryRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRenderer
 
EntryToStringFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryToStringFunction
 
EntryUI(UserFriendlyErrorUI.Entry) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI
 
EnumItemInfo - Interface in org.hkijena.jipipe.extensions.parameters.primitives
Used by EnumParameterEditorUI to extract icons and other information for its enum value
EnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
A parameter editor UI that works for all enumerations
EnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI
 
EnumParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
EnumParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Helper class to register Enum parameters
EnumParameterTypeInfo(String, Class<? extends Enum<?>>, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
EqualityPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
EqualityPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
equalize(List<ImagePlus>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns true if the name and value are equal
equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
equals(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
equals(Object) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
equals(Object) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
equals(Object) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
equals(Object) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
equals(Object) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Tests this renderer for equality with an arbitrary object.
EqualsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
EqualsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction
 
error(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
error(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
escapeString(String) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
Escapes a string, so it can be used within quotes
escapeString(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils
Escapes a string to be used within macros Will not add quotes around the string
escapeVariable(String) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
Escapes a variable name into a valid expression
evaluate(String, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
evaluate(Function, Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
evaluate(Constant, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
evaluate(Operator, Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
Runs the function on given parameters
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator
Evaluates the operator
evaluate(StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
Runs the expression and returns the result.
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateArrayFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreateMapFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.CreatePairArrayFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapKeysFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapValuesFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ParseJsonFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToJsonFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction
 
evaluate(List<Object>, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction
 
evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator
 
evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
evaluate(Collection<Object>, Collection<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
evaluate(Map<Object, Object>, Map<Object, Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator
 
evaluate(Map<Object, Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
evaluate(Collection<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
evaluate(double, double) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
evaluate(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
evaluate(Iterator<Object>, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator
 
evaluate() - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI
 
EVALUATOR - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter
 
exact(int) - Static method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
expandAllTree(JTree) - Static method in class org.hkijena.jipipe.utils.UIUtils
Expands the whole tree
expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
expandImage(ImageProcessor, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
expandImageCanvas(ImagePlus, Color, int, int, Anchor) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Expands the canvas of an image
expandImageProcessorCanvas(ImageProcessor, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
expandImageStackCanvas(ImageStack, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
expandLeftTop(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Expands the canvas by moving all algorithms
expandRightBottom(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Expands the canvas
expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
expandStack(ImageStack, int, int, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
ExpColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a exponential (base e) function
ExpColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation
 
ExplodeRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ExplodeRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm
Instantiates a new node type.
ExplodeRoiAlgorithm(ExplodeRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm
Instantiates a new node type.
exportAllSlicesToPNG() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
ExportCompartmentAsJsonNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
ExportCompartmentAsJsonNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
ExportCompartmentToNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
ExportCompartmentToNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
exportCurrentSliceToPNG() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
ExportData - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
 
ExportData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData
 
ExportData(ExportData) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData
 
ExportDataByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
 
ExportDataByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
ExportDataByParameter(ExportDataByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
ExportNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
ExportNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
exportROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
exportVideo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
ExpressionBuilderParameterUI - Class in org.hkijena.jipipe.extensions.parameters.expressions
A parameter UI for the expression builder.
ExpressionBuilderParameterUI() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI
 
ExpressionBuilderParameterUI.Mode - Enum in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionBuilderSyntaxChecker - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionBuilderSyntaxChecker(RSyntaxTextArea) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderSyntaxChecker
 
ExpressionBuilderUI - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionBuilderUI(String, Set<ExpressionParameterVariable>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
ExpressionBuilderUI.EntryRankingFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionBuilderUI.EntryRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionBuilderUI.EntryToStringFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionConstant(String, Object) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstant
 
ExpressionConstantEntry - Class in org.hkijena.jipipe.extensions.parameters.expressions
Organizes Operator instances and puts them together with a name and description
ExpressionConstantEntry(Constant) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
 
ExpressionConstantEntry(String, String, Constant) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
 
ExpressionEvaluator - Class in org.hkijena.jipipe.extensions.parameters.expressions
The base class for an evaluator
ExpressionEvaluator(Parameters) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionEvaluator
Constructor.
ExpressionFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions
Function that can be utilized in DefaultExpressionEvaluator.
ExpressionFunction(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
 
ExpressionFunction(String, int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
 
ExpressionFunctionEntry(String, String, String, ExpressionFunction) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry
 
ExpressionFunctionRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList.ExpressionFunctionRenderer
 
ExpressionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionOperator(String, int, Operator.Associativity, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator
 
ExpressionOperatorEntry - Class in org.hkijena.jipipe.extensions.parameters.expressions
Organizes Operator instances and puts them together with a name and description
ExpressionOperatorEntry(Operator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
ExpressionOperatorEntry(String, String, Operator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
ExpressionOperatorRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList.ExpressionOperatorRenderer
 
ExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions
A parameter that contains an expression.
ExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
 
ExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
 
ExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
 
ExpressionParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.expressions
Controls the behavior of an ExpressionParameter.
ExpressionParameterVariable - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
ExpressionParameterVariable(String, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
ExpressionParameterVariableSource - Interface in org.hkijena.jipipe.extensions.parameters.expressions
Provides the list of available variables.
ExpressionTableColumnGeneratorProcessor - Class in org.hkijena.jipipe.extensions.tables.parameters.processors
Processor-like parameter that maps a column generator to a string
ExpressionTableColumnGeneratorProcessor() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ExpressionTableColumnGeneratorProcessor
Creates a new instance
ExpressionTableColumnGeneratorProcessor(ExpressionTableColumnGeneratorProcessor) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ExpressionTableColumnGeneratorProcessor
Creates a copy
ExpressionTableColumnGeneratorProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
 
ExpressionTableColumnGeneratorProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ExpressionTableColumnGeneratorProcessorParameterList
Creates a new instance
ExpressionTableColumnGeneratorProcessorParameterList(ExpressionTableColumnGeneratorProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ExpressionTableColumnGeneratorProcessorParameterList
Creates a copy
ExpressionTesterMenuExtension - Class in org.hkijena.jipipe.extensions.parameters
Adds an entry "New table" to the JIPipe menu
ExpressionTesterMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.ExpressionTesterMenuExtension
Creates a new instance
ExpressionTesterUI - Class in org.hkijena.jipipe.utils
A developer tool to test DefaultExpressionEvaluator
ExpressionTesterUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.utils.ExpressionTesterUI
 
ExpressionVariableRenderer() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList.ExpressionVariableRenderer
 
EXTENSION_FILTER_BMP - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_CSV - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_HTML - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_JIP - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_JIPC - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_JIPE - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_JPEG - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_MD - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_PDF - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_PNG - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
EXTENSION_FILTER_SVG - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
ExtensionContentAddedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent
 
ExtensionContentRemovedEvent(JIPipeJsonExtension, Object) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent
 
ExtensionDiscoveredEvent(JIPipe, JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent
 
ExtensionRegisteredEvent(JIPipeRegistry, JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent
 
ExtensionSettings - Class in org.hkijena.jipipe.extensions.settings
Settings related to how algorithms are executed
ExtensionSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ExtensionSettings
Creates a new instance
extract(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Tries to extract data from the cache
extract(JIPipeGraphNode, JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Tries to extract data from the cache.
extract(JIPipeGraphNode, String, String) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Tries to extract data from the cache.
extract(Collection<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Copies the selected algorithms into a new graph Connections between the nodes are kept
ExtractAndReplaceAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
ExtractAndReplaceAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
New instance
ExtractAndReplaceAnnotation(ExtractAndReplaceAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
Copies the algorithm
extractAnnotationsFromPython(PyDictionary) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Sets annotations from a Python dictionary
ExtractFileName - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ExtractFileName(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName
 
ExtractFileName(ExtractFileName) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName
Copies the algorithm
ExtractFromROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
ExtractFromROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
ExtractFromROIAlgorithm(ExtractFromROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
ExtractImageInRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
ExtractImageInRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
ExtractImageInRoiAlgorithm(ExtractImageInRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
extractMergedAnnotations(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
Extracts merged annotations
ExtractParent - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ExtractParent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
 
ExtractParent(ExtractParent) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
Copies the algorithm
ExtractRegexMatchesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ExtractRegexMatchesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction
 

F

FactorizeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Converts each entry into a factor
FactorizeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation
 
FancyPasswordField - Class in org.hkijena.jipipe.ui.components
A JXTextField with some fancy additions
FancyPasswordField(JLabel) - Constructor for class org.hkijena.jipipe.ui.components.FancyPasswordField
Creates a new instance
FancyTextField - Class in org.hkijena.jipipe.ui.components
A JXTextField with some fancy additions
FancyTextField(JLabel, String) - Constructor for class org.hkijena.jipipe.ui.components.FancyTextField
Creates a new instance
FastHoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Segments using a Hough circle transform This code is based on https://github.com/closms/detectcircles
FastHoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
FastHoughSegmentation2DAlgorithm(FastHoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
fatal(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
fatal(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
FFT2DForwardTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
Applies a FFT forward transformation
FFT2DForwardTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform
Creates a new instance
FFT2DForwardTransform(FFT2DForwardTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform
Creates a copy
FFT2DInverseTransform - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
Applies a FFT forward transformation
FFT2DInverseTransform(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform
Creates a new instance
FFT2DInverseTransform(FFT2DInverseTransform) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform
Creates a copy
FFT2DSwapQuadrants - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
Applies a FFT forward transformation
FFT2DSwapQuadrants(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants
Creates a new instance
FFT2DSwapQuadrants(FFT2DSwapQuadrants) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants
Creates a copy
FIJI_DOWNLOAD_URL - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
FIJI_UPDATE_SITES - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
FileChooserSettings - Class in org.hkijena.jipipe.extensions.settings
Settings concerning file dialogs
FileChooserSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
FileChooserSettings - Class in org.hkijena.jipipe.installer.linux.ui.utils
Settings concerning file dialogs
FileChooserSettings() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
 
FileData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes
Data containing a file
FileData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData
 
FileData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData
 
FileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input file
FileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
Initializes the algorithm
FileDataSource(FileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
Copies the algorithm
FileListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input file
FileListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
Initializes the algorithm
FileListDataSource(FileListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
Copies the algorithm
FileParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Editor for a File parameter
FileParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI
 
FilePathParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Editor for a Path parameter
FilePathParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI
 
FilePathParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
Attached to the getter or setter of Path parameter to setup the GUI
FilesystemDataSlotPreview - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis
Renders filesystem data as table cell
FilesystemDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreview
Creates a new renderer
FilesystemExtension - Class in org.hkijena.jipipe.extensions.filesystem
Extension that provides filesystem data types
FilesystemExtension() - Constructor for class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
FileSystemNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
FileSystemNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
FileTableModel - Class in org.hkijena.jipipe.ui.ijupdater
Copy of FileTableModel for usage in JIPipe
FileTableModel(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
FileTableModelFilter - Class in org.hkijena.jipipe.ui.ijupdater
 
FileTableModelFilter(SearchTextField, ViewOptions.Option) - Constructor for class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter
 
fileToRow - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
FILL_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
FILL_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
fillPaintIndex - Variable in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
FilterAndMergeRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
FilterAndMergeRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
Instantiates a new node type.
FilterAndMergeRoiByStatisticsScriptAlgorithm(FilterAndMergeRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
Instantiates a new node type.
FilterPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
FilterPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
Instantiates the algorithm
FilterPaths(FilterPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
Copies the algorithm
FilterROIByOverlapAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
FilterROIByOverlapAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
FilterROIByOverlapAlgorithm(FilterROIByOverlapAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
FilterRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
FilterRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
Instantiates a new node type.
FilterRoiByStatisticsAlgorithm(FilterRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
Instantiates a new node type.
FilterRoiByStatisticsScriptAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
FilterRoiByStatisticsScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
Instantiates a new node type.
FilterRoiByStatisticsScriptAlgorithm(FilterRoiByStatisticsScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
Instantiates a new node type.
FilterTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
FilterTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
Creates a new instance
FilterTableAlgorithm(FilterTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
Creates a copy
finalize() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
finalize() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
finalize() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
finalize() - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
findCompartmentUIs(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Finds open JIPipeCompartmentUI tabs
findCompatibleTargetAlgorithms(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI
Finds all algorithms that fit to the slot according to the information in JIPipeNodeInfo
findCompatibleTargetAlgorithms(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI
Finds all algorithms that fit to the slot according to the information in JIPipeNodeInfo
findExtensionById(String) - Method in class org.hkijena.jipipe.JIPipe
 
findExtensionById(String) - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
findFileByExtensionIn(Path, String...) - Static method in class org.hkijena.jipipe.utils.PathUtils
Finds a file in the specified folder with given extension
findFilesByExtensionIn(Path, String...) - Static method in class org.hkijena.jipipe.utils.PathUtils
Finds a file in the specified folder with given extension
findNodeGraphUIs(JIPipeWorkbench, NodeGroup) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI
Finds open JIPipeCompartmentUI tabs
FindParticles2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
Converts a mask to ROI and ROI measurements
FindParticles2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
FindParticles2D(FindParticles2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
Copies the algorithm
findRangeBounds(CategoryDataset) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the range of values from the specified dataset that the renderer will require to display all the data.
findRowWithAnnotations(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Finds the row that matches the given traits
findTabNameFor(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Finds the tab title for the content
findUnsatisfiedDependencies(Set<JIPipeDependency>) - Static method in interface org.hkijena.jipipe.JIPipeDependency
Finds all dependencies that cannot be met
findWorkerOf(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Finds the worker associated to the JIPipeRunnable
findWorkerOf(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Finds the worker associated to the JIPipeRunnable
fireChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Fires a TableModelEvent to all listeners
fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
fireFileChanged(FileObject) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
fireRowChanged(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
fitImageToScreen() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
fitRowHeights(JTable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Fits the row heights of a JTable
flatten() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Makes all ROI visible on all stacks
FloatList - Class in org.hkijena.jipipe.extensions.parameters.primitives
A list of Float
FloatList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList
Creates a new empty list
FloatList(FloatList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatList
Creates a copy
FloatParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Float
FloatParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
FloatPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Float
FloatPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
FloatRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Float
FloatRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.FloatRangeParameterGenerator
Creates a new instance
FloorColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
FloorColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation
 
flush(Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Saves the stored data to the provided storage path and sets data to null Warning: Ensure that depending input slots do not use this slot, anymore!
FolderData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes
Data that stores a folder
FolderData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData
 
FolderData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData
 
FolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input folder
FolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
Initializes the algorithm
FolderDataSource(FolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
Copies the algorithm
FolderListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input folder
FolderListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
Creates a new instance
FolderListDataSource(FolderListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
Copies the algorithm
forCategory(String) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Returns a report for the specified category
FORCE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Whether to force reflection
FORCE_TRAVERSE - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel
With this flag, the parameter collection is always traversed, even if the provided parameter collection was already traversed
forceCloseTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Closes the tab.
forEachIndexedSlice(ImagePlus, BiConsumer<ImageProcessor, Integer>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs the function for each slice
forEachIndexedZCTSlice(ImagePlus, BiConsumer<ImageProcessor, ImageSliceIndex>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs the function for each Z, C, and T slice.
forEachIndexedZTSlice(ImagePlus, BiConsumer<Map<Integer, ImageProcessor>, ImageSliceIndex>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs the function for each Z and T slice.
forEachSlice(ImagePlus, Consumer<ImageProcessor>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs the function for each slice
formatDateTime(LocalDateTime) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
A nice human-readable format
formatDateTime(LocalDateTime) - Static method in class org.hkijena.jipipe.utils.StringUtils
A nice human-readable format
formatDuration(long) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Formats a duration in milliseconds to something readable
formatDuration(long) - Static method in class org.hkijena.jipipe.utils.StringUtils
Formats a duration in milliseconds to something readable
formatNumber(double) - Static method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI
 
FormPanel - Class in org.hkijena.jipipe.installer.linux.ui.utils
Organizes UI in a form layout with integrated help functionality, and grouping with conditional visibility
FormPanel(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Creates a new instance
FormPanel - Class in org.hkijena.jipipe.ui.components
Organizes UI in a form layout with integrated help functionality, and grouping with conditional visibility
FormPanel(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel
Creates a new instance
FormPanel.FutureComponent - Class in org.hkijena.jipipe.ui.components
 
FormPanel.GroupHeaderPanel - Class in org.hkijena.jipipe.installer.linux.ui.utils
Panel that contains a group header
FormPanel.GroupHeaderPanel - Class in org.hkijena.jipipe.ui.components
Panel that contains a group header
FormPanel.HoverHelpEvent - Class in org.hkijena.jipipe.installer.linux.ui.utils
Event triggered when the user triggers a hover-help
FormPanel.HoverHelpEvent - Class in org.hkijena.jipipe.ui.components
Event triggered when the user triggers a hover-help
forUpload - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
FrangiVesselnessFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
Applies CLAHE image enhancing
FrangiVesselnessFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
FrangiVesselnessFeatures(FrangiVesselnessFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
Copies the algorithm
FrangiVesselnessFeatures.SlicingMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
Available ways how to handle higher-dimensional images
fromCSV(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Loads a table from CSV
fromEvaluator(ExpressionEvaluator, boolean) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
Extracts operators from an evaluator
fromEvaluator(ExpressionEvaluator, boolean) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
Extracts operators from an evaluator
fromFile(Path) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument
Loads a document from file
fromFile(Path) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument
Loads a document from file
fromFolder(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Loads data from a folder
fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
Loads data from JSON
fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
fromJson(JsonNode) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Loads this configuration from JSON
fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject
Loads the project from JSON
fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Loads this graph from JSON
fromJson(JsonNode, JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Loads this algorithm from JSON
fromJson(JsonNode) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Loads the holder from JSON
fromJson(JsonNode) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Loads metadata from JSON
fromJson(JsonNode) - Method in interface org.hkijena.jipipe.utils.JsonDeserializable
Loads JSON data into the current object instance
fromPluginResource(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument
Loads a document from the JIPipe plugin resources
fromPluginResource(String) - Static method in class org.hkijena.jipipe.ui.components.MarkdownDocument
Loads a document from the JIPipe plugin resources
fromPython(PyDictionary) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts a Python dictionary of column name to row data list to a results table
fromTableModel(TableModel) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts a table model into a string results table
fullRedraw() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Removes all UIs and adds them back in
FunctionParameter<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions
A parameter that allows to model a function with an input, an output, and parameters.
FunctionParameter(Class<I>, Class<P>, Class<O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
Creates a new instance
FunctionParameter(FunctionParameter<I, P, O>) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
FunctionParameter.Deserializer<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions
Deserializes the parameter
FunctionParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.functions
Serializes the parameter
FunctionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.functions
FunctionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI
Creates new instance
FunctionParameterInputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions
Access to a FunctionParameter input
FunctionParameterInputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
FunctionParameterOutputAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions
Access to a FunctionParameter output
FunctionParameterOutputAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
FunctionParameterParameterAccess<I,P,O> - Class in org.hkijena.jipipe.extensions.parameters.functions
Access to a FunctionParameter parameter
FunctionParameterParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
FunctionSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions
Panel that allows the user to select an ExpressionFunction
FunctionSelectorList() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList
 
FunctionSelectorList.ExpressionFunctionRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
FutureComponent(Component, GridBagConstraints, Component, GridBagConstraints, boolean) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.FutureComponent
 

G

GaussianBlur2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around GaussianBlur
GaussianBlur2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
Instantiates a new node type.
GaussianBlur2DAlgorithm(GaussianBlur2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
Instantiates a new node type.
GaussianBlur3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around GaussianBlur
GaussianBlur3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
Instantiates a new node type.
GaussianBlur3DAlgorithm(GaussianBlur3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
Instantiates a new node type.
GeneralDataSettings - Class in org.hkijena.jipipe.extensions.settings
 
GeneralDataSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
GeneralUISettings - Class in org.hkijena.jipipe.extensions.settings
All settings for JIPipeGraphEditorUI
GeneralUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
generateAnnotation(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression
Generates an annotation
generateAnnotationValue(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
Generates an annotation value
GenerateColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that adds or replaces a column by a generated value
GenerateColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
Creates a new instance
GenerateColumnAlgorithm(GenerateColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
Creates a copy
generateCompendiumFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI
 
generateCompendiumFor(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Generates the compendium page for the item
generateCompendiumFor(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI
 
generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm
Generates data batches.
generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
generateDataBatchesDryRun(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
GenerateDocumentationUtil - Class in org.hkijena.jipipe.extensions.clij2
 
GenerateDocumentationUtil() - Constructor for class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil
 
GeneratedParameters - Class in org.hkijena.jipipe.extensions.multiparameters.datasources
Encapsulates the generation of parameters
GeneratedParameters(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters
 
GeneratedParameters(GeneratedParameters) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters
 
GenerateFromMathExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
GenerateFromMathExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
Instantiates a new node type.
GenerateFromMathExpression2D(GenerateFromMathExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
Instantiates a new node type.
generateMetadataString(JIPipeDataSlot, int, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Generates a unique string based on metadata for the selected row
generateMetadataString(JIPipeExportedDataTable, int, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
generateRotations(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
generateSlice(int, int, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
GenerateStructureElementAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
Wrapper around ImageProcessor
GenerateStructureElementAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
Instantiates a new node type.
GenerateStructureElementAlgorithm(GenerateStructureElementAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
Instantiates a new node type.
GenerateTableFromExpressionAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that adds or replaces a column by a generated value
GenerateTableFromExpressionAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
Creates a new instance
GenerateTableFromExpressionAlgorithm(GenerateTableFromExpressionAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
Creates a copy
generateTempDirectory(String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
Generates a temporary directory
generateTempDirectory(String) - Static method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
Generates a temporary directory
generateTempFile(String, String) - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
Generates a temporary directory
GenerateUniqueAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
GenerateUniqueAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
New instance
GenerateUniqueAnnotation(GenerateUniqueAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
Copies the algorithm
generateWholeCompendium() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Generates a document that contains the whole compendium
GenericOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
GenericOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
GenericOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericOperator
 
GenericPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
GenericPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
GenericPredicateOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.GenericPredicateOperator
 
get() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter
 
get(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
get() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
get(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Returns the parameter with key
get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
get(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Gets the parameter value
get(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
get() - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator
 
get(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
get(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
get() - Method in class org.hkijena.jipipe.utils.InstantFuture
 
get(long, TimeUnit) - Method in class org.hkijena.jipipe.utils.InstantFuture
 
getA1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getAbsoluteFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
getAbsoluteFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
getAbsoluteFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
getAbsoluteFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
getAbsolutePath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
getAbsolutePaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
getAcceptedDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getAcceptedDataTypeId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getAccess() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent
 
getAction() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent
 
getActions() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getActiveWindow() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
getAdapter() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter
 
getAdapterForImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns a matching adapter for an ImageJ data type
getAdapterForImageJData(Object) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Applies conversion from JIPipe to ImageJ data
getAdapterForJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns a matching adapter for a JIPipe data type
getAdapterForJIPipeData(JIPipeData) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Gets a matching adapter for the provided data
getAddableAlgorithms() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getAddDataToString() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
getAdditionalMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getAffiliations() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
getAfterSlotConfiguration() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
getAlgorithm() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
 
getAlgorithm() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeSlotsChangedEvent
 
getAlgorithm() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
 
getAlgorithm() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI
 
getAlgorithm() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI
 
getAlgorithm() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI
 
getAlgorithmBackup(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
 
getAlgorithmCompartment(JIPipeProjectWorkbench, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Returns the compartment name of the algorithm that generated the data
getAlgorithmCompartment() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns the compartment name of the algorithm that generated the data
getAlgorithmDocumentation(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
 
getAlgorithmDocumentation(JIPipeGraphNode) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
 
getAlgorithmGraph() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
getAlgorithmGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getAlgorithmId() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getAlgorithmId() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
getAlgorithmInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration
 
getAlgorithmName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getAlgorithmName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getAlgorithmName(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Returns the name of the algorithm that generated the data
getAlgorithmName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns the name of the algorithm that generated the data
getAlgorithmParametersJson() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getAlgorithmsWithCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the algorithms within the specified compartment ID.
getAlgorithmsWithExternalInput() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
getAlgorithmTooltip(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a tooltip for an algorithm.
getAlgorithmTooltip(JIPipeNodeInfo, boolean) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a tooltip for an algorithm
getAllChildParameters(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Returns all child parameters of the entry If the entry is an JIPipeParameterAccess, it is returned.
getAllDescriptions() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
 
getAllowedInputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getAllowedInputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
getAllowedOutputSlotTypes() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getAllowedOutputSlotTypes() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
getAllowedTypes() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
 
getAllowedValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
getAllPredecessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils
Gets all parent nodes of the vertex
getAllPredecessors(V) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
getAllSuccessors(Graph<V, E>, V) - Static method in class org.hkijena.jipipe.utils.GraphUtils
Gets all successors of the vertex
getAlpha() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
getAnchor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getAngle() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
getAnnotation(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getAnnotationBoundingHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationBoundingWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getAnnotationC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationCLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
getAnnotationColumnChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
getAnnotationColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getAnnotationColumnSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
getAnnotationExpression() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm
 
getAnnotationExpression() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
 
getAnnotationMap() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Mutable access to the annotations
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
getAnnotationMergeStrategy() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm
 
getAnnotationNameFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Returns an existing annotation Only the exact type is used for searching
getAnnotationOfType(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Returns an existing annotation Only the exact type is used for searching
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getAnnotationOfType(Class<T>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Finds an annotation for this parameter
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getAnnotationOfType(Class<U>) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getAnnotationOfType(Class<T>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getAnnotationOr(int, String, JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns the annotation of specified type or the alternative value.
getAnnotationPrefix() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
 
getAnnotations(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the list of annotations for a specific data row
getAnnotations(Set<Integer>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the list of annotations for specific data rows
getAnnotations() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
 
getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Gets the list of annotations.
getAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Gets the list of annotations
getAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
getAnnotations(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
Gets all annotations at the specified row
getAnnotationT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getAnnotationT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationTLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
getAnnotationType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
getAnnotationX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getAnnotationX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationXLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
getAnnotationY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getAnnotationY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationYLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
getAnnotationZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getAnnotationZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getAnnotationZLocation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
getAppendDataTypeMetadataKey() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getArray() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns the value as array or an array with the value if it is not an array.
getArtifactPaint() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the paint used to color the median and average markers.
getAssembleTemplatesBackground() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getAssembleTemplatesOutput() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getAttachment(Class<T>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns an attachment or null if it does not exist
getAuthors() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getAuthors() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
getAuthors() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getAutoLayout() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
getAutoSaveDelay() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
getAutoThresholding() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getAvailableAlgorithmIcons() - Static method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI
 
getAvailableData() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Contains single-column series that will be later spliced together depending on the user's settings
getAvailableParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Gets the available parameters in the graph
getAvailableParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
An optional reference of all available parameters.
getAvailableSources(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns all available sources for an input slot.
getAvailableTargets(JIPipeDataSlot, boolean, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns all available target for an output slot Does not check for cycles.
getB1() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
getBackgroundColor() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getBackgroundImage() - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel
 
getBackgroundType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
getBackupGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
getBackupList() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getBandwidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getBaselineOffset() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
getBaseName() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
getBaseName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource
 
getBaseName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getBenchedAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getBinAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getBinAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getBins() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
getBins() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getBioFormatsCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
getBitDepthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getBlack() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the black color.
getBlack() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the black color.
getBlack() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the black color.
getBlockRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
 
getBlurSigmaX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
 
getBlurSigmaY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
getBlurSigmaZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
getBorderColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getBorderColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
The border color for algorithm nodes
getBorderColor() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
getBorderColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getBorderColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns a border color for JIPipeNodeInfo
getBorderDefinition() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
 
getBorderInsets(Component, Insets) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder
 
getBorderInsets(Component, Insets) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder
 
getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
getBorderWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getBottom() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getBottomY() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Get the Y location of the bottom part
getBounds() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Returns the bounds of area described by the Roi
getById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns the data class with specified ID
getC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
getCache() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getCache() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent
 
getCachedCache(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
Returns the cache of the current algorithm state.
getCachedDataTypes() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Returns statistics on how many rows of given data type have been cached
getCachedId(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
Returns the current cache state of an algorithm node.
getCachedRowNumber() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Returns the number of cached data rows
getCalibrationMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
getCanvas() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getCanvas() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
getCanvas() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
getCanvas() - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior
Returns the canvas the contains the algorithm nodes
getCanvasEqualizer() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent
 
getCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getCategories() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
 
getCategory() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Gets the algorithm category
getCategory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getCategory() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns the algorithm category
getCategory(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
 
getCategory() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
 
getCategory() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getCategoryAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
getCategoryAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
getCategoryIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
 
getCategoryOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
Returns the category of an algorithm
getCategoryParameter() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getCellRendererFor(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns a cell renderer for dataslot result table
getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
getCenterX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
getCenterY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
getCenterZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
getCentroid(Roi) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Gets the centroid of a ROI
getChangedGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
getChannelColorAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
getChannelName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
getChannelPosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
The overall channel position of the ROIs.
getChannelReordering() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
getChannelSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getChannelToSlotAssignment() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData
 
getChart() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData
 
getChartPanel() - Method in class org.hkijena.jipipe.ui.components.PlotReader
 
getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm
 
getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
getChildParameterCollections() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList
 
getChildParameterCollections() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection
Returns all sub-parameter collections
getChildParameterCollections() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
getChildren() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getCitation() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getCitation() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
getCitation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getCleanedMenuPath(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Cleans a menu path string
getCleanedMenuPath(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Cleans a menu path string
getCloseMode() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
getCode() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
getCode() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
getCode() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
getCollection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm
 
getColor() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop
 
getColor() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
getColorForGap(int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
getColorMap() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
getColorMap() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getColorMap() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
getColorMode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
getColorMode() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getColors() - Method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap
 
getColumn() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
 
getColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Returns the column definition of given index
getColumn() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
getColumnAsDouble(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
Gets a copy of a column by name
getColumnAssignments() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
getColumnAssignments() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
getColumnAsString(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
Gets a copy of a column by name
getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getColumnClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getColumnClass(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getColumnClass(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
getColumnClass(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getColumnClass(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getColumnCopy(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a column as vector.
getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getColumnCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getColumnCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getColumnCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getColumnCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
getColumnCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getColumnCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getColumnFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
getColumnFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
 
getColumnHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getColumnIdentifiers(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils
Gets the table's column names
getColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getColumnIndex(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns the index of an existing column
getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getColumnName(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getColumnName() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn
 
getColumnName() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
 
getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getColumnName(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getColumnName(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getColumnName(int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
getColumnName(int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getColumnName(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getColumnNames() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getColumnOperation() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction
 
getColumnOperationById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
Returns an operation by ID
getColumnRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
getColumnReference(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a column as vector.
getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
getColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
getColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
 
getColumnWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
getColumnX1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getColumnX2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
getColumnY1() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getColumnY2() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getComboBox() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent
 
getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent
 
getCompartment() - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentRenamedEvent
 
getCompartment() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the compartment the algorithm is located within
getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI
 
getCompartment() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI
 
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI
Returns the compartment ID
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI
Returns the graph compartment
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI
Returns the compartment ID
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI
Returns the graph compartment
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getCompartment() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getCompartmentGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
getCompartmentInstance() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
getCompartmentName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getCompartmentName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getCompartmentOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the graph compartment ID of the algorithm This graph must contain the algorithm
getCompartments() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getCompatibleTypes() - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
Returns all types compatible with the MacroWrapperAlgorithm
getComponentNameAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
getCompression() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression
 
getCompression() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getConfiguration() - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.SlotsChangedEvent
 
getConfiguration() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
getConfirmIcon() - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton
 
getConflictWarnings() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
getConstant() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType
 
getConstant() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
 
getContent() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
getContent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
getContent() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
getContent() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent
 
getContent() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent
 
getContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getContent() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
 
getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter
 
getContentClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
getContentPanel() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
getContentPanel() - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
getContents() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
getContentX() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getContentY() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getContext() - Method in class org.hkijena.jipipe.JIPipeGUICommand
 
getContext() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getContext() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
getContext() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver
 
getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getContext() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getContext() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
getContext() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench
 
getContext() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
getContext() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
getContextActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
getContrastEnhancer() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getControlSize() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
getControlSize() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon
 
getControlTextColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the control text color.
getControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the control text color.
getControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the control text color.
getConverter() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge
The converter if the data types cannot be trivially converted
getCountAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getCounterAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getCredentials() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
Converts the credentials into a SciJava OMERO location
getCropRegions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
getCropRegions() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getCurrentConnectionDragSource() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getCurrentConnectionDragTarget() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getCurrentContent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
 
getCurrentExpressionValue() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI
 
getCurrentHighlightedForDisconnect() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getCurrentlySelectedValue() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
 
getCurrentMode() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI
 
getCurrentPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
getCurrentRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
 
getCurrentRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
getCurrentSlicePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
getCustomColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
getCustomDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
getCustomDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the custom description that is set by the user
getCustomMax() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
getCustomMenuRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getCustomMenuRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getCustomMenus() - Static method in class org.hkijena.jipipe.JIPipe
 
getCustomMin() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
getCustomName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getCustomName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getDarkBorderColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getDarkBorderColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
The border color for algorithm nodes (dark theme)
getDarkFillColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getDarkFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getDarkFillColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
The fill color for algorithm nodes (dark theme)
getData(int, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the data stored in a specific row.
getData(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
getData() - Method in class org.hkijena.jipipe.extensions.strings.StringData
 
getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getData() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getData() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview
 
getData() - Method in class org.hkijena.jipipe.utils.RankedData
 
getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getDataAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns as many data entries as rows
getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getDataAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getDataAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns as many data entries as rows
getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getDataAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
getDataBatchGenerationSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
getDataClass(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the true type of the data at given row
getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getDataClass() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
getDataClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
 
getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent
 
getDataInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent
 
getDataInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
getDatasetId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
getDatasetIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource
 
getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
getDataSetMatching() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
getDatasetNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getDatasetNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getDatasetNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getDataSlot() - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI
 
getDataSourcesFor(Class<? extends T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns data source algorithms that can generate the specified data type
getDataTooltip(JIPipeDataInfo) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a tooltip for data
getDataToString() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getDataTypeOf(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Returns the true data type (if available) or the accepted data type of the given row
getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeDeselectedEvent
 
getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.DataTypeSelectedEvent
 
getDataTypePicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent
 
getDatatypeRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getDatatypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getDataTypes() - Static method in class org.hkijena.jipipe.JIPipe
 
getDataTypesByMenuPaths() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets the registered data types, grouped by their menu paths
getDateTime() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry
 
getDeactivatedAlgorithms() - Method in class org.hkijena.jipipe.api.JIPipeProject
Returns a list of all nodes that cannot be executed or are deactivated by the user.
getDeactivatedAlgorithms() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user
getDeactivatedAlgorithms(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Gets all algorithms and all dependent algorithms that are missing inputs or are deactivated by the user
getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns all data infos added by the dependency
getDeclaredBy(JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Gets all algorithms declared by the dependency
getDefaultParameterCollectionDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup
 
getDefaultParameterCollectionDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection
A default description.
getDefaultParameterCollectionName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup
 
getDefaultParameterCollectionName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeNamedParameterCollection
A default name.
getDefaultPassword() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getDefaultRunThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getDefaultServer() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getDefaultSortOrder() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
getDefaultTemplateProject() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Creates a new project instance based on the current template selection
getDefaultTestBenchThreads() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getDefaultUserName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getDefaultViewMode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
getDeltaAngle() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getDependencies() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
getDependencies() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Gets all dependencies of all algorithms
getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns a list of all dependencies this algorithm currently has.
getDependencies() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
 
getDependencies() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns all dependencies
getDependencies() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getDependencyAlgorithmIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
getDependencyCitations() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
getDependencyCitations() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Returns all dependent work
getDependencyDatatypeClasses() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
getDependencyDatatypeIds() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
getDependencyId() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
getDependencyId() - Method in interface org.hkijena.jipipe.JIPipeDependency
 
getDependencyId() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getDependencyId() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getDependencyLocation() - Method in interface org.hkijena.jipipe.JIPipeDependency
Gets the location of the JAR/JSON that defined the dependency
getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getDependencyLocation() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getDependencyVersion() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
getDependencyVersion() - Method in interface org.hkijena.jipipe.JIPipeDependency
 
getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getDependencyVersion() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge
 
getDepth() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
getDescription() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
getDescription() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
getDescription() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
getDescription() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getDescription(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Gets the name or custom name.
getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getDescription() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
getDescription() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getDescription() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns the algorithm description
getDescription() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
A description
getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns a description
getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getDescription() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getDescription() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
 
getDescription() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry
 
getDescription() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
getDescription() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
 
getDescription() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
 
getDescription() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getDescription() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
getDescription() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
getDescription() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
getDescription() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getDescription() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
getDescription() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
getDescription() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
getDescriptionArea() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel
 
getDescriptionArea() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
 
getDescriptionOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Returns the description of a data type
getDescriptionOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
Returns the description of an algorithm
getDesktopColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the desktop color.
getDesktopColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the desktop color.
getDesktopColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the desktop color.
getDespeckleIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
 
getDestination_x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
 
getDestination_y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
getDestination_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
getDetails() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
getDetails() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
getDevice() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
getDialog() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
getDialog() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
 
getDialog() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
 
getDilationErodeSteps() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
getDilationIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getDimension() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate
 
getDimensionalityOf(Class<? extends ImagePlusData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
Gets the dimensionality of ImagePlusData
getDimensionCOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getDimensionOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
getDimensionTOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getDimensionZOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getDisplayedName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getDisplayedParameters() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
getDisplayName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns a name that includes the algorithm name and the slot name.
getDisplayName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getDisplayName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getDisplayName(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Returns a name that identifies this row
getDisplayName() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns a name that identifies this row
getDisplayOperationsFor(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets all import operations for a data type ID
getDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.HoverHelpEvent
 
getDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
getDocument() - Method in class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent
 
getDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
 
getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
getDocumentation() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getDocumentationPanel() - Method in class org.hkijena.jipipe.ui.components.DocumentedComponent
 
getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver
 
getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
getDocumentTabPane() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
getDocumentTabPane() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench
 
getDoubleValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
getDragAndDropBehavior() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
Returns a duplicate of the contained image
getDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
Returns a duplicate of the contained image
getEdgesBetween(JIPipeGraphNode, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Gets all edges between two algorithm nodes
getEffectiveInputSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
Returns the number of input slots that are not parameter slots.
getEffectiveInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Method that can be overwritten by child classes.
getEffectiveInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
getEigenvalueSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
getEigenvalueSelection2D() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
getElement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
getEmail() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getEntry(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getEntryClass() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getEnumValues(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
Gets all enum values via reflection
getEqualsString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getEquivalentAlgorithm(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the algorithm that has the same ID as the foreign algorithm in the foreign graph.
getEquivalentRows(Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns the row indices grouped by the values of the provided columns
getEquivalentSlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the slot with the same name within the algorithm with the same ID.
getErosionIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getErroneousNodes() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
getErroneousPlugins() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
getError() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getEvaluator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameter
 
getEvaluator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
Returns the evaluator instance that should evaluate this expression type
getEventBus() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
 
getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getEventBus() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getEventBus() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
 
getEventBus() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup
 
getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList
 
getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
getEventBus() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Event bus that triggers ParameterReferencesChangedEvent
getEventBus() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
 
getEventBus() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the even bus
getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
 
getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
getEventBus() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
getEventBus() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Gets the event bus that posts events about the parameters
getEventBus() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets the event bus that post registration events
getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns the event bus that posts registration events
getEventBus() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
 
getEventBus() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getEventBus() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
 
getEventBus() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
getEventBus() - Method in class org.hkijena.jipipe.JIPipe
 
getEventBus() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
getEventBus() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getEventBus() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getEventBus() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getEventBus() - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
getEventBus() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
getEventBus() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getEventBus() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort
 
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Returns the event bus
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI
Returns the event bus.
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI
Returns the event bus
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Returns the event bus
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI
Returns the event bus.
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI
Returns the event bus
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getEventBus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
getEventBus() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
getEventBus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
getEventBus() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
getExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
getException() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent
 
getException() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent
 
getExecutorService() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
Returns the ExecutorService or null.
getExpectedNumberOfObjects() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getExponent() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power
 
getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm
 
getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getExportedParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
getExportedParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
getExportedSlotNames() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getExporter() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
getExporter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
getExporter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm
 
getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
getExporterSettings() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
getExporterSettings() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
getExportHeight() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getExportWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getExpression() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
 
getExpression() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
getExpression() - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI
 
getExpressionList() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm
 
getExpressionRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getExpressionRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentAddedEvent
 
getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionContentRemovedEvent
 
getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent
 
getExtension() - Method in class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent
 
getExtensionBuilderLogo400() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
getExtensionFilters() - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
getExtensionWorkbenchUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel
 
getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
 
getFactor() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
 
getFactor() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
getFactor1() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
 
getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
 
getFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
 
getFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
getFactorZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
getFailedExtensions() - Method in class org.hkijena.jipipe.JIPipe
 
getFieldClass() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition
 
getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns the parameter data type
getFieldClass() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
getFieldClass() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getFieldClassInfoId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getFieldClassInfoId() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
getFileFromModel(int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getFileName() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
getFileNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
getFileNames() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
getFilePath() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
getFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI
 
getFillBox() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the flag that controls whether or not the box is filled.
getFillColor() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getFillColor() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getFillColor() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
The fill color for algorithm nodes
getFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getFillColor() - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
getFillColor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getFillColorAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getFillColorFor(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns a fill color for JIPipeNodeInfo
getFillMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
getFilter() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI
 
getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Returns all items that should be available
getFilteredItems() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI
 
getFilterExpression() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
getFilters() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
getFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
 
getFilters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm
 
getFirstColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
getFirstIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the first input slot according to the slot order.
getFirstInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
GetFirstItemFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GetFirstItemFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction
 
getFirstName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
getFirstOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the first output slot according to the slot order.
getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
getFirstSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
getFlipMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
 
getFolderPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
getFolderPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
getFollowedDimension() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getFontSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getFontSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getForegroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getForegroundColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getFormatName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getFraction() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop
 
getFramePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
The overall frame position of the ROIs.
getFramesSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getFunction() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
getFunction() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry
 
getFunction() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getFunctionParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getFunctions() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
getGaussianAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
 
getGaussianSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
getGaussSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm
 
getGeneratedAnnotation() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
 
getGeneratedImageType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
getGeneratedImageType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
getGeneratedRows() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
getGeneratedType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
 
getGenerationSettingsInterface() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeDataBatchAlgorithm
Returns the batch generation settings as interface
getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
getGenerationSettingsInterface() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
getGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
getGeneratorDocumentationFor(Class<? extends JIPipeParameterGeneratorUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Returns documentation for the generator
getGeneratorsFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Returns all generators for the parameter class
getGeneratorType() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
 
getGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
getGraph() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Returns the reference to the graph.
getGraph() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
getGraph() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
getGraph() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
getGraph() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getGraph() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.GraphChangedEvent
 
getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent
 
getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent
 
getGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the graph this algorithm is located in.
getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getGraph() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getGraphCanvasUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent
 
getGraphEditorCursor() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getGraphEditorUI() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension
 
getGraphHistory() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory.GraphHistoryChangedEvent
 
getGraphHistory() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getGraphUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getGridColor() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getGridHeight() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
 
getGridWidth() - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
 
getGroupedBySource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets the parameters grouped by the source
getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
Gets the graphs's input node
getGroupInput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Gets the graphs's input node
getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
Gets the graphs's output node
getGroupOutput() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Gets the graphs's output node
getHeaderPanelBackground() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
getHeavyIntermediateAlgorithmOutputSlots() - Method in class org.hkijena.jipipe.api.JIPipeProject
Returns a list of all nodes that generate heavy data (JIPipeHeavyData) and are intermediate (see getIntermediateAlgorithms()).
getHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
getHeight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getHeightAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getHeightTolerance() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
getHistogramType() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getHyperstackReassignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
getIcon() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getIcon() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getIcon() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getIcon() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Icon shown in the UI
getIcon() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
 
getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo
 
getIcon(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo
 
getIcon(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo
Extracts an icon for the enum value
getIcon() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
getIcon(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
getIcon() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
getIcon() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getIcon() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
getIcon() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
getIcon() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
getIcon128FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIcon128FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIcon32FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIcon32FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIcon64FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIcon64FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIcon8FromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIcon8FromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIconFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns the icon for a datatype
getIconFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns the icon for a trait
getIconFromColor(Color) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates 16x16 a color icon
getIconFromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIconFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIconHeight() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
getIconHeight() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon
 
getIconName() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef
 
getIconURL() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
getIconURLFor(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
 
getIconURLFor(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
 
getIconURLFor(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns the icon resource path URL for a trait
getIconURLFromResources(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns an icon from JIPipe resources
getIconURLFromResources(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns an icon from JIPipe resources
getIconWidth() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
getIconWidth() - Method in class org.hkijena.jipipe.utils.CheckBoxIcon
 
getId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
getId() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Generates an Id for this info
getId() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Unique identifier of this category
getId() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
getId() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
 
getId() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry
 
getId() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation
 
getId() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
The ID of the selected entry
getId() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
The ID of the selected entry
getId() - Method in class org.hkijena.jipipe.JIPipe.DatatypeRegisteredEvent
 
getIdInGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the ID within the current graph.
getIdOf(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the ID of the algorithm within this graph.
getIdOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets the ID of the data type
getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
Returns annotation types that should be ignored by the internal logic.
getIgnoredAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
getImage() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
getImageArea() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
getImageFilters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
getImageFiltersOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
getImageId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
getImageIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource
 
getImageJAdapters() - Static method in class org.hkijena.jipipe.JIPipe
 
getImageJDataAdapterRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getImageJDataAdapterRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getImageJDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Gets the corresponding ImageJ data type
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
getImageJDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
getImageJPlugins() - Method in class org.hkijena.jipipe.JIPipe
 
getImageJRoot() - Static method in class org.hkijena.ijupdatercli.Main
 
getImageJRoot() - Static method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getImageJUpdateSiteDependencies() - Method in interface org.hkijena.jipipe.JIPipeDependency
List of ImageJ update sites that are dependencies
getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getImageJUpdateSiteDependencies() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getImageJUpdateSites() - Method in interface org.hkijena.jipipe.JIPipeDependency
List of ImageJ update sites that provide the dependency
getImageJUpdateSites() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getImageNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getImageNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getImageTypeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getImageViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
getImporter() - Method in class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI
 
getImporterClassFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Gets the importer for the specified ImageJ data type
getImportOperationsFor(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets all import operations for a data type ID
getIn() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
 
getInactiveControlTextColor() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the inactive control text color.
getInactiveControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the inactive control text color.
getInactiveControlTextColor() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the inactive control text color.
getIndex() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
 
getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask
 
getIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel
 
getIndex() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod
 
getIndexAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
getIndexIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getInfo() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getInfo() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the JIPipeNodeInfo that describes this algorithm
getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
getInfo() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
 
getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent
 
getInfo() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent
 
getInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI
 
getInfoByFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Return a parameter type by its field class
getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Gets a matching info by Id
getInfoById(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Returns a parameter type info by ID
getInheritanceConversions() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getInheritedSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Gets slot to inherit the data type from If null or empty, this slot does not inherit If it equals '*', the first available input slot is chosen
getInitialBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getInput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getInputAnnotationByFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getInputAnnotationColumnIntersection(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getInputAnnotationColumnUnion(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getInputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getInputData(String, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Gets stored data from an input slot
getInputData(JIPipeDataSlot, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Gets stored data from an input slot
getInputData(String, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Gets stored data from an input slot
getInputData(JIPipeDataSlot, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Gets stored data from an input slot
getInputRows(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Returns the row indices that belong to this data interface
getInputRows(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Returns the row indices that belong to this data interface
getInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the input slot with the specified name.
getInputSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent
 
getInputSlotImporters() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
 
getInputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Gets all input slot instances
getInputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getInputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
 
getInputSlotOrder() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Gets the input slot order
getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Raw access to all data stored in the batch
getInputSlotRows() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Raw access to all data stored in the batch
getInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
 
getInputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns all input slots ordered by the slot order
getInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getInputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns general input data.
getInputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getInputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
getInputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
getInputType() - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
getInstallationPath() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
getInstallerRun() - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow
 
getInstance(Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
Returns a JIPipeDataInfo instance for the data class.
getInstance(String) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
Returns a JIPipeDataInfo instance for the data type ID.
getInstance() - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DataExporterSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getInstance() - Static method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
getInstance() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
 
getInstance() - Static method in class org.hkijena.jipipe.JIPipe
 
getInstance() - Static method in class org.hkijena.jipipe.ui.components.SplashScreen
 
getInstance() - Static method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
getInstanceClass() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getInstanceClass() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getInstanceClass() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
The algorithm class that is generated
getInstanceClass() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getInstanceFromRaw() - Static method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
Gets an instance from the raw properties file.
getInstanceGenerator() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
getIntegerByDialog(Component, String, String, int, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Gets an integer by dialog
getIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
Generates the list of integers based on the value
getIntermediateAlgorithms() - Method in class org.hkijena.jipipe.api.JIPipeProject
Returns all nodes that have at least one connected algorithm that uses its generated data.
getInternalGradientRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
getInternalPath() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getInternalStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the internal storage path relative to the output folder.
getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
getInterpolationMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
getInvalidResponses() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Gets the response keys that are invalid
getIoMode() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
getIoMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI
 
getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Returns the renderer for the items
getItemListRenderer() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI
 
getItemMargin() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the item margin.
getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon
 
getIterations() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon
 
getIterations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
getJiPipe() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
getJIPipeDatatype() - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Gets the corresponding JIPipe data type
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
getJIPipeDatatype() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
GetJIPipeSlotFolderAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
GetJIPipeSlotFolderAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
GetJIPipeSlotFolderAlgorithm(GetJIPipeSlotFolderAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
getJpegQuality() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getJsonFilePath() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getJsonNode() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
getKernelFunction() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
getKernelScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
getKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns the unique ID of this parameter
getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent
 
getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
getKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getKey() - Method in class org.hkijena.jipipe.utils.MacroFlag
 
getKey() - Method in class org.hkijena.jipipe.utils.MacroSetting
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
getKeyboardShortcut() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
Returns an optional keyboard shortcut.
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
getKeyboardShortcut() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
getKeyClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
getKeyValuePairAnnotations(MetadataFacility, SecurityContext, DataObject) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
 
getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getKeyValuePairFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getKnownNonAlphanumericOperatorTokens() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
getLabel() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
 
getLabel() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
 
getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo
 
getLabel(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo
 
getLabel(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo
Extracts a custom label for the enum value
getLabel(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getLabel() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Label of this column
getLabel() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getLabel() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getLabelFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
 
getLabelFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
 
getLabelGenerator() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getLanguage() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript
 
getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro
 
getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript
 
getLanguage() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
The language info.
getLanguageName() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript
 
getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro
 
getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript
 
getLanguageName() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
Returns the human-readable name of the language
getLargerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getLargerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getLastDataDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
getLastDirectoryBy(String) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Gets the last directory by key
getLastIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getLastInputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the last input slot according to the slot order.
GetLastItemFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GetLastItemFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction
 
getLastName() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
getLastOutputSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the last output slot according to the slot order.
getLastParametersDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
getLastProjectsDirectory() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
getLastSaves() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
getLastSegment() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
getLatestBackup() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getLeft() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getLegendFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getLegendItem(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns a legend item for a series.
getLicense() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getLicense() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
getLicense() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getLineColorAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLineMeasurement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
getLineThickness() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
 
getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
 
getLineThickness() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
 
getLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getLineWidthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getListCellRendererComponent(JList<? extends Roi>, Roi, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.RoiListCellRenderer
 
getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRenderer
 
getListCellRendererComponent(JList<? extends JIPipeExpressionRegistry.ExpressionFunctionEntry>, JIPipeExpressionRegistry.ExpressionFunctionEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList.ExpressionFunctionRenderer
 
getListCellRendererComponent(JList<? extends ExpressionOperatorEntry>, ExpressionOperatorEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList.ExpressionOperatorRenderer
 
getListCellRendererComponent(JList<? extends ExpressionParameterVariable>, ExpressionParameterVariable, int, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList.ExpressionVariableRenderer
 
getListCellRendererComponent(JList<? extends DocumentTabPane.DocumentTab>, DocumentTabPane.DocumentTab, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.DocumentTabListCellRenderer
 
getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeGraphNode>, JIPipeGraphNode, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeDataInfoRef>, JIPipeDataInfoRef, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeDataInfo>, JIPipeDataInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer
 
getListCellRendererComponent(JList<? extends Map.Entry<JIPipeDataInfo, JIPipeDataInfo>>, Map.Entry<JIPipeDataInfo, JIPipeDataInfo>, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeNodeInfo>, JIPipeNodeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer
 
getListCellRendererComponent(JList<? extends JIPipeParameterTypeInfo>, JIPipeParameterTypeInfo, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer
 
getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PathListCellRenderer
 
getListCellRendererComponent(JList<? extends String>, String, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer
 
getListCellRendererComponent(JList<? extends Path>, Path, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer
 
getListCellRendererComponent(JList<? extends ResultsTableData>, ResultsTableData, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeProjectTemplate>, JIPipeProjectTemplate, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer
 
getListCellRendererComponent(JList<? extends T>, T, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.WindowListCellRenderer
 
getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeDependency>, JIPipeDependency, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer
 
getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer
 
getListCellRendererComponent(JList<? extends JIPipeDataSlot>, JIPipeDataSlot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer
 
getListCellRendererComponent(JList<? extends TableColumn>, TableColumn, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer
 
getListCellRendererComponent(JList<? extends JIPipeLogViewer.LogEntry>, JIPipeLogViewer.LogEntry, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntryRenderer
 
getListCellRendererComponent(JList<? extends JIPipeTestbenchSnapshot>, JIPipeTestbenchSnapshot, int, boolean, boolean) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer
 
getLocalRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
getLocationCAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLocations() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
 
getLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
 
getLocationTAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLocationWithin(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the location within the specified compartment or null if none is set
getLocationXAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLocationYAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLocationZAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
getLog() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
getLog() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry
 
getLogFile() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
getLogicalOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
getLogLimit() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getLogo() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
getLogo() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getLogo() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
getLogo400() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
getLogService() - Method in class org.hkijena.jipipe.JIPipe
 
getLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
getMacroParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
getMaintainer() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
getManifestAttributes() - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
 
getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
getMapFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
getMapImage() - Method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap
 
GetMapKeysFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GetMapKeysFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapKeysFunction
 
getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
getMapLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
GetMapValuesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GetMapValuesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetMapValuesFunction
 
getMarkdown() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument
 
getMarkdown() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument
 
getMatrix() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
 
getMatrix() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
 
getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
 
getMax() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
 
getMax() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode
 
getMax_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
 
getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
 
getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
 
getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
 
getMax_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
getMaximumBarWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the maximum bar width as a percentage of the available drawing space.
getMaximumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
getMaximumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
getMaxInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getMaxIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
getMaxNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getMaxOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getMaxParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getMaxParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getMaxProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
getMaxProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent
 
getMaxProgress() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus
 
getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
getMaxRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getMaxSlope() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
getMaxThreads() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
 
getMaxThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
getMaxThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
getMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
getMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
getMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getMenuDisabledForeground() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the menu disabled foreground color.
getMenuDisabledForeground() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the menu disabled foreground color.
getMenuDisabledForeground() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the menu disabled foreground color.
getMenuExtensionsTargeting(MenuTarget, JIPipeWorkbench) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
Gets all extensions for a specific menu
getMenuPath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
getMenuPath() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getMenuPath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getMenuPath() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Gets the menu path of this algorithm
getMenuPath() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getMenuPath() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension
 
getMenuPathList() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getMenuPathOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Returns the menu path of the data type
getMergedColumn(Set<String>, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a column that contains all values of the selected columns
getMergedColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
getMessage() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent
 
getMessage() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus
 
getMessages() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
 
getMetadata() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
 
getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProject
 
getMetadata() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
getMetadata() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
getMetadata() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getMetadata() - Method in interface org.hkijena.jipipe.JIPipeDependency
 
getMetadata() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getMetadata() - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
getMetadataKeyFilter() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getMetadataValueLengthLimit() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
getMethod() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
getMethod() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
getMimeType() - Method in class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript
 
getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro
 
getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript
 
getMimeType() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
Returns the MIME type of this script
getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.JsonData
 
getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.StringData
Returns the MIME type of the string
getMimeType() - Method in class org.hkijena.jipipe.extensions.strings.XMLData
 
getMimeType() - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor
 
getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
 
getMin() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
 
getMin() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode
 
getMin_display_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
 
getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
 
getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
 
getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
 
getMin_z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
getMinimumGreyValue() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
getMinimumScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
getMinIntensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
getMinNumCircles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getMinParticleCircularity() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getMinParticleSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
getMinRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getMinScore() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
getMinThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
getMinThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
getMissingImageJSites() - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
getMissingString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
getMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
getMode() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
getMode() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
getMode() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
getModel() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getMouseModelPixelCoordinate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
Gets the pixel coordinates inside the shown image under the mouse.
getMultiChannelMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
getMultiLineStringByDialog(Component, String, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Gets a multiline string by dialog
getMultiObjectMaximumBoundingBoxOverlap() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getMultiObjectScoreThreshold() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getName() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
getName() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
getName() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation
 
getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getName() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getName() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
getName() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Gets the name or custom name
getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getName() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
getName() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.CutCompartmentGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.CutNodeGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
getName() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
getName() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the algorithm name
getName() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns the algorithm name
getName() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
The name displayed in menus and other UI
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition
 
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns the parameter name that is displayed to the user
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getName() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
 
getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ExpressionFunctionEntry
 
getName() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
 
getName() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
getName() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
 
getName() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstantEntry
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
getName() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getName() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
 
getName() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
getName() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
getName() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
getName() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Return the name of this theme, "Ocean".
getName() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getName() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
getName() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
getName() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
getName() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry
 
getName() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Return the name of this theme, "Ocean".
getName() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
 
getName() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Return the name of this theme, "Ocean".
getNameAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
getNameOf(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Returns the name of a data type
getNameOf(Class<? extends JIPipeGraphNode>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
Returns the name of an algorithm
getNativeMeasurementEnumValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List
Returns the integer value that describes which measurements to extract
getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod
 
getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression
 
getNativeValue() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
 
getNativeValue() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
 
getNativeValue() - Method in enum org.hkijena.jipipe.utils.ListSelectionMode
 
getNeighborhood() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getNewInstanceGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
 
getNextFillPaint() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
getNextPaint() - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
getNode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getNode(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
 
getNode() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
 
getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
 
getNode() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getNode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getNodeCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
getNodeGroup() - Method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI
 
getNodeId() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
getNodeInfo() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
getNodeInfo() - Method in class org.hkijena.jipipe.JIPipe.NodeInfoRegisteredEvent
 
getNodeInfo() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter
 
getNodeInfo() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
getNodeInfos() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getNodeInfosFromClass(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns all node infos that create a node of the specified class
getNodeRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getNodeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getNodes() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
getNodes() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
getNodes() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
 
getNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns all algorithms
getNodes() - Static method in class org.hkijena.jipipe.JIPipe
 
getNodesAfter(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getNodesOfCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Gets all algorithms of specified category
getNodeUI() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getNodeUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getNodeUIsFor(Set<T>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getNonParameterInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints
 
getNPoints() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints
 
getNumberOfBins() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
getNumScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
getNumSlices() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack
 
getNumThreads() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
getNumThreads() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
getNumThreads() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getObjectMapper() - Static method in class org.hkijena.jipipe.utils.JsonUtils
 
getOffset() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
 
getOpenInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns all input slots that do not have data set.
getOpenTabs() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
getOpenWindows() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getOpenWindows() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getOperands() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
getOperatingSystem() - Static method in class org.hkijena.ijupdatercli.Main
 
getOperation() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
 
getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
getOperation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
getOperation() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry
 
getOperations() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot
 
getOperator() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getOptionalParameter() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getOrCreateColumnIndex(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns the index of an existing column or creates a new column if it does not exist
getOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.DefaultDataDisplayOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
 
getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
getOrder() - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
getOriginalAnnotations(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Gets the original annotations of given slot
getOriginalAnnotations(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Gets the original annotations of given slot
getOriginalAnnotations(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Gets the original annotations of given slot
getOriginalAnnotations(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Gets the original annotations of given slot
getOriginalBorderSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
getOriginalName(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Gets the name in the original graph Returns null if resolve() is unsuccessful
getOriginalSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
getOut() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
 
getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm
 
getOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
 
getOutput() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getOutputClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getOutputDimension() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
getOutputDimension() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
getOutputDirectory() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.JsonData
 
getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.StringData
The extension that is generated by the output function
getOutputExtension() - Method in class org.hkijena.jipipe.extensions.strings.XMLData
 
getOutputFile() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getOutputFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getOutputNode() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
getOutputPath() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
getOutputPath() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
getOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the output slot with the specified name.
getOutputSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.AlgorithmFinderSuccessEvent
 
getOutputSlotMap() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Gets all output slot instances
getOutputSlotOrder() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getOutputSlotOrder() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
 
getOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
getOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
 
getOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns all output slots ordered by the slot order
getOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
getOutputSlots() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns general output data.
getOutputSlots() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getOutputSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
getOutputTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI
 
getOutputType() - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
getOutputType() - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
getOutsideColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getOverlapFilter() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
getOverlapFilter() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getOverlapFilterMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
getOverlapFilterMeasurements() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
getOverrideFillColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
getOverrideLineColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
getOverrideLineWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getPair() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
getParallelizationBatchSize() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm
Returns how many threads the actual algorithm requires.
getParallelizationBatchSize() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
getParallelizationBatchSize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Gets a parameter by its key
getParameter(JIPipeParameterCollection, String, Class<T>) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Gets a parameter from a JIPipeParameterCollection
getParameter() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getParameter(Class<T>) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Gets or creates a parameter instance.
getParameterAccess() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Gets the parameter accessor
getParameterAnnotationsPrefix() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
getParameterClass() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
getParameterCollection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent
 
getParameterCollection() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
 
getParameterData() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
getParameterHelp() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
getParameterHelp() - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
getParameterHolder() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Gets the object that holds the parameter
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
Returns info about the parameter at index
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperator
Returns info about the parameter at index (left to right)
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ColumnOperationAdapterFunction
Returns info about the parameter at index
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetFirstItemFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetLastItemFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.AdditionFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ContainsOperator2
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ElementAccessOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.EqualityPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
getParameterInfo(int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator
 
getParameterKeyAssignments() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm
 
getParameterReferenceGroups() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
 
getParameters() - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter
 
getParameters() - Method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm
 
getParameters() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup
 
getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList
 
getParameters() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
 
getParameters() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeCustomParameterCollection
Returns all parameters Please note that those parameters must be sourced in this collection.
getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
getParameters(JIPipeParameterCollection) - Static method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Accesses the parameters of a collection
getParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
 
getParameters() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition
 
getParameters() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
getParametersByPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
getParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
Returns the parameter slot if enabled
getParameterSlotAlgorithmSettings() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
getParametersUI() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI
 
getParameterTable() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition
 
getParameterTree() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Extracts all parameters as tree
getParameterTypeRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getParameterTypeRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getParameterTypes() - Static method in class org.hkijena.jipipe.JIPipe
 
getParent() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
 
getParent() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getParent() - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getParent() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getParent() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getParentPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter
 
getPassword() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
getPassword() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter
 
getPath() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
getPath() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getPath() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
getPath() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
getPath() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
getPath() - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
getPathMode() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
getPathMode() - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
getPathName() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString
 
getPaths() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
getPercentile() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
 
getPersistence() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getPersistence() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Controls the persistence of the parameter
getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getPersistence() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent
 
getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent
 
getPicker() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent
 
getPipelineParameters() - Method in class org.hkijena.jipipe.api.JIPipeProject
Returns the global parameters for this pipeline
getPixelCoordinate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas.PixelHoverEvent
 
getPlaneIndex() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice
 
getPlaneNumberAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getPlotBuilderUI() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
getPlotType() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
getPlotType() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
getPlotTypeParameters() - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
getPluginDirectory() - Static method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
getPluginManager() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI
 
getPluginResource(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
Gets a plugin-internal resource as URL
getPluginResource(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils
Gets a plugin-internal resource as URL
getPluginResourceAsStream(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
Gets a plugin-internal resource as Stream
getPluginResourceAsStream(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils
Gets a plugin-internal resource as Stream
getPluginResourceAsString(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
Gets a plugin resource as string
getPluginResourceAsString(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils
Gets a plugin resource as string
getPluginService() - Method in class org.hkijena.jipipe.JIPipe
 
getPositionC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getPositionC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getPositionT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getPositionT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getPositionX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getPositionX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getPositionY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getPositionY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getPositionZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getPositionZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getPredecessorAlgorithms(JIPipeGraphNode, List<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns all predecessor algorithms of an algorithm.
getPredecessorStates() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
getPreferredSize() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getPreferredSize() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getPreferredSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getPrefix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
getPreprocessingScript() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
getPreviewHeight() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
getPreviewSize() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
getPreviewWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
getPrimary1() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the primary 1 color.
getPrimary1() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the primary 1 color.
getPrimary1() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the primary 1 color.
getPrimary2() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the primary 2 color.
getPrimary2() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the primary 2 color.
getPrimary2() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the primary 2 color.
getPrimary3() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the primary 3 color.
getPrimary3() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the primary 3 color.
getPrimary3() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the primary 3 color.
getPriority() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getPriority() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns the priority for (de)serializing this parameter.
getPriority() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getPriority() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
getProcessorParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
 
getProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
getProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent
 
getProgress() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus
 
getProgressInfo() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
getProgressInfo() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
getProgressInfo() - Method in interface org.hkijena.jipipe.api.JIPipeRunnable
The info object that allows communication with the run
getProgressInfo() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
getProgressInfo() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
getProject() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
getProject() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
getProject() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
getProject() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
getProject() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
 
getProject() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
 
getProject() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
getProject() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
getProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel
 
getProject() - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
getProjectAlgorithm() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getProjectCompartmentId() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
getProjectCompartmentTooltip(JIPipeProjectCompartment, JIPipeGraph) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a tooltip for a project compartment
getProjectFile() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
getProjectId() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
getProjectIds() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource
 
getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getProjectNameAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getProjectNameFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getProjectSavePath() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getProjectTemplate() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
getProjectType() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
getProjectType() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getProjectUI() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getProjectWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel
 
getPropertyFile() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
 
getPropertyPanel() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox
 
getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond
 
getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox
 
getRadius() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
 
getRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
getRadiusIncrement() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
getRadiusX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
getRadiusY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
getRadiusZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
getRankAt(int) - Method in class org.hkijena.jipipe.utils.RankedData
 
getRankingFunction() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getRatio() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getRawNode() - Static method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Gets the raw property files Json node
getRealTimeRunDelay() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getRecentJsonExtensionProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
getRecentProjects() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
getRectangle(Point, int, int) - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
Reconstructs the rectangle from a location anchored inside
getRectangleCoordinates(Rectangle) - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
Gets the coordinate inside given rectangle
getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm
 
getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
 
getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm
 
getRectangles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
 
getRedoLocation() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
 
getReferenceColumns() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getReferenceImage(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
Extracts or generates the reference image.
getReferencePosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getReferenceSlice() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices
 
getRegexString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
getRegisteredAdapters() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
 
getRegisteredCategories() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
 
getRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets all registered data types
getRegisteredExpressionFunctions() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
Registered expression functions.
getRegisteredExtensionIds() - Method in class org.hkijena.jipipe.JIPipe
 
getRegisteredExtensionIds() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getRegisteredExtensions() - Method in class org.hkijena.jipipe.JIPipe
 
getRegisteredExtensions() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getRegisteredImporterUIs() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
 
getRegisteredMenuExtensions() - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
 
getRegisteredNodeClasses() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
 
getRegisteredNodeInfos() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Gets the set of all known algorithms
getRegisteredParameters() - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
 
getRegisteredSheets() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
 
getRegisteredSources() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
getRegisteredTableColumnOperations() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
The registered column operations.
getRegistry() - Method in class org.hkijena.jipipe.JIPipe.ExtensionDiscoveredEvent
 
getRegistry() - Method in class org.hkijena.jipipe.JIPipe.ExtensionRegisteredEvent
 
getRegistry() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getRegistry() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension
Returns the registry
getRegistry() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getRelativeLocation() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
getRelativeX() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
 
getRelativeY() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
 
getRelevantParameterKeys() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
Finds the parameter keys that are relevant according to the current anchor setting The anchor key 'anchor' is not part of the result.
getRelevantParameters() - Method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
 
getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
 
getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
 
getRenamingEntries() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
getRenderedHTML() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument
 
getRenderedHTML() - Method in class org.hkijena.jipipe.ui.components.MarkdownDocument
 
getRendererComponent(JXMultiThumbSlider) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
getReport() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker
 
getResolution() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getResourceBasePath() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
 
getResourceBasePath() - Static method in class org.hkijena.jipipe.utils.ResourceUtils
 
getResourcePath() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
getResourcePath(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
Gets an internal resource.
getResourcePath(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils
Gets an internal resource.
getRight() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getRightX() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
getRoi() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
 
GetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
GetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm
Instantiates a new node type.
GetRoiImageAlgorithm(GetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm
Instantiates a new node type.
getRoiName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
getRoiName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
getRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
getRollingBallRadius() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
getRoot() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
getRotateTemplate() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getRotation() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getRotationDirection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
getRotations() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
getRotationStep() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getRow() - Method in class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource
 
getRow(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
Returns the location
getRow() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource
 
getRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getRow(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
getRow() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
 
getRow() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns the data row that is displayed
getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getRowAsDouble(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns the data entry as string
getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getRowAsDouble(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getRowAsString(int) - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns the data entry as string
getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getRowAsString(int) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getRowComparator(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder
Creates a comparator for ResultsTableData rows that is equivalent to the column order in this object
getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getRowCount() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getRowCount() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getRowCount() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getRowCount() - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
getRowCount() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getRowCount() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getRowGenerator() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getRowList() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getRowMergingStrategy() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
getRowNormalization() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
getRows() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
getRows(Collection<Integer>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
getRows() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns the number of rows that are existing (not generated)
getRows() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
getRows() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
getRowStorageFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getRowStorageFolder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getRowStorageFolder(JIPipeDataSlot, JIPipeExportedDataTable.Row) - Static method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Returns the folder where the data is stored
getRowStorageFolder() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns the folder where the data is stored
getRowStoragePath(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the storage path of a data row from a result.
getRowStoragePath() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource
 
getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent
 
getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent
 
getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent
 
getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent
 
getRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
getRun() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI
 
getRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent
 
getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent
 
getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent
 
getRun() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent
 
getRunSettings() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getSavePath() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant
 
getScalar() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar
 
getScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
getScale() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
getScaleFactorX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getScaleFactorY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getScales() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
getScheduledRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
getScriptParameters() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
getScrollPane() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getScrollPane() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getScrollPane() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
getScrollPane() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
getScrollPane() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getScrollPane() - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
getScrollPane() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
 
getScrollPane() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getScrollPane() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getSearchField() - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
 
getSearchStrings() - Method in class org.hkijena.jipipe.ui.components.SearchTextField
Returns the search strings according to the current text
getSecondary1() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the secondary 1 color.
getSecondary1() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the secondary 1 color.
getSecondary1() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the secondary 1 color.
getSecondary2() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the secondary 2 color.
getSecondary2() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the secondary 2 color.
getSecondary2() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the secondary 2 color.
getSecondary3() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Returns the secondary 3 color.
getSecondary3() - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Returns the secondary 3 color.
getSecondary3() - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Returns the secondary 3 color.
getSecondColor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
getSelectColorPrompt() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
getSelectedCalibration() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getSelectedColor() - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
getSelectedDataTypes() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
getSelectedIcon() - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
 
getSelectedInfo() - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
 
getSelectedInfos() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
getSelectedItem() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
getSelectedNode() - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog
 
getSelectedNodes() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getSelectedSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI
 
getSelectedSources() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Returns the currently selected sources.
getSelectedTab() - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
getSelectedTemplate() - Method in class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog
 
getSelection() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
getSelectionByDialog(Component, Collection<T>, Collection<T>, String, String, ListCellRenderer<T>, ListSelectionMode) - Static method in class org.hkijena.jipipe.utils.UIUtils
Lets the user select one or multiple items from a list
getSeparatorString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
getSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getSeriesBuilders() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
getSeriesToImport() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
getServer() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
getSettings(String, Class<T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Gets the settings instance with given ID
getSettings() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getSettings() - Static method in class org.hkijena.jipipe.JIPipe
 
getSettingsRegistry() - Method in class org.hkijena.jipipe.JIPipe
 
getSettingsRegistry() - Method in interface org.hkijena.jipipe.JIPipeRegistry
 
getShortKey() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getShortKey() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns a short form of the ID used, for example to generate a parameter string.
getShortKey() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getShortKey() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getShortName() - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
 
getSigma() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
 
getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
getSigma1x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
getSigma1y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigma1z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
getSigma2x() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
getSigma2y() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigma2z() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
getSigmaX() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
getSigmaY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
getSigmaZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
Returns the signature of the function
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ContainsStringPredicateFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.EqualsStringPredicateFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.ExtractRegexMatchesFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction
 
getSignature() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction
 
getSingletonTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
 
getSlice() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getSlice(TableColumn, List<Integer>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns a new table column that contains the selected rows in the provided order
getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
 
getSliceAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
getSlicesToImport() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
getSlicingMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
getSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource
 
getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
Gets the slot that defined the specified row
getSlot(int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
Gets the slot that defined the specified row
getSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource
 
getSlot() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getSlot() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getSlot() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getSlot() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
 
getSlot() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Returns the data slot
getSlotConfiguration() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Gets the slot configuration
getSlotCount() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
getSlotDataType() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
 
getSlotEdges() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns all edges as set of edges
getSlotInstanceTooltip(JIPipeDataSlot) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a tooltip for an JIPipeDataSlot
getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Returns the UI location of a data slot that is located in the graph
getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Returns the location of a slot in relative coordinates
getSlotLocation(JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
getSlotName() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getSlotName() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
getSlotNodes() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
getSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
getSlots() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
getSlots() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
getSlots() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
getSlotTable(Collection<JIPipeDataSlotInfo>) - Static method in class org.hkijena.jipipe.utils.TooltipUtils
Creates a slot definition table.
getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
getSlotType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
getSmallerMajor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getSmallerMinor() - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
getSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
getSortedAndFilteredData(Collection<T>, Function<T, String>, RankingFunction<T>, String[]) - Static method in class org.hkijena.jipipe.utils.RankedData
Creates a list of sorted ranked data
getSortedList(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Gets name sorted list of data classes
getSortedList(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Gets a sorted list of algorithms
getSortOrderList() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
getSortOrderList() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
getSortOrderList() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
getSource() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getSource() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
getSource() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
getSource() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent
 
getSource() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent
 
getSource() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent
 
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition
 
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getSource() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Gets the object that holds the parameter
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent
 
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEvent
 
getSource() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getSource() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getSource() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent
 
getSourceActions(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler
 
getSourceColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry
 
getSourceDocumentation(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets source documentation
getSourceDocumentationName(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets source name
getSourceKey(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets unique source key
getSourceNode(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Returns the node of a collection
getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns the source that registered that data type
getSourceOf(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns the source that registered that data type
getSourceOf(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns the source of a registered algorithm
getSources() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
getSourceSlots(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
If exists, returns the output slots that provide data for the input slot Returns and empty list if there are none
getSourceUIOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets source UI order
getSourceVisibility(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets source visibility
getSplashIcons() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
getSplashIcons() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
getSplashIcons() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
getSplashIcons() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
getSplashIcons() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
getSplashIcons() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension
Returns icons that will be displayed in the splash screen.
getSplitCharacter() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
getSplitPickedIndex() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
getStackAssignments() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
getStackIndex(int, int, int, int, int, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Stack index (one-based)
getStackIndex(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
getStackIndexInSingleChannel(ImagePlus, int, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
getStackOrder() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
getStackOrder() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getStackPosition() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
The overall stack position of the ROIs.
getStackSizeAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getStartAngleDegrees() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
getStartSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
 
getStartX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
 
getStartY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
getStartZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
getStateId() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
getStateId() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns a unique identifier that represents the state of the algorithm.
getStatistics() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
getStatistics(List<ResultsTableData.IntegratingColumnOperationEntry>, Set<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Generates a new table that contains statistics.
getStatisticsParameters() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
getStatus() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
getStatus() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent
 
getStatus() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent
 
getStopSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
getStorageDataTable() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Only valid for slots generated by a JIPipeRun.
getStorageDataTablePath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Only valid for slots generated by a JIPipeRun.
getStoragePath() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the storage path that is used during running the algorithm for saving the results This is not used during project creation
getStoragePath() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
The storage path is used in JIPipeRun to indicate where output data is written This is only used internally
getStringFromClipboard() - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Returns a string from clipboard or an empty string
getStringFromClipboard() - Static method in class org.hkijena.jipipe.utils.UIUtils
Returns a string from clipboard or an empty string
getStringRepresentation() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
getStringValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
getSubFolder() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
getSubPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
 
getSuffix() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
getSuggestedName() - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
 
getSupportedImageJDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns all supported ImageJ data types
getSupportedJIPipeDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns all supported JIPipe data types
getT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
getTabbedPane() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
 
getTabComponent() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getTabContaining(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Returns the tab that contains the specified content
getTabCount() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
 
getTabLabelShiftX(int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
Overridden to do nothing for the Java L&F.
getTabLabelShiftY(int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
Overridden to do nothing for the Java L&F.
getTable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getTable() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer
 
getTableColumnOperationsOfType(Class<? extends ColumnOperation>) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
Returns all operations that are assignable to the filter class
getTableModel() - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
 
getTableOperations() - Static method in class org.hkijena.jipipe.JIPipe
 
getTables() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm
 
getTabRunOverlay(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
getTabs() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
 
getTabsContaining(Class<? extends Component>) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Returns all tabs that contain components of provided type or components that inherit from it
getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getTagAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getTagAnnotations(MetadataFacility, SecurityContext, DataObject) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
 
getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
getTagFilters() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
getTarget() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
getTarget() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent
 
getTarget() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent
 
getTarget() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.ContextAction
 
getTargetColumnName() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry
 
getTargetGraph() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
getTargetSlots(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns the list of input slots that are provided by the source slot Returns an empty set if the target is an input or no slot exists
getTargetSlots() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation
 
getTaskLabel() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
getTaskLabel() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
getTaskLabel() - Method in interface org.hkijena.jipipe.api.JIPipeRunnable
A name for the runnable
getTaskLabel() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
getTaskLabel() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
getTempDirectory() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
getTempDirectory() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
getTemplate() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionFunction
Returns a template function that can be used to get users started
getTemplate() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionOperatorEntry
 
getTemplateDescription() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata
 
getTemplateMatchingMethod() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
getTemporaryDocument() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
getTemporaryDocument() - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
 
getTestBenchRun() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
getText() - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
 
getText() - Method in class org.hkijena.jipipe.ui.components.FancyTextField
 
getText() - Method in class org.hkijena.jipipe.ui.components.SearchTextField
 
getTextField() - Method in class org.hkijena.jipipe.ui.components.FancyTextField
 
getTextField() - Method in class org.hkijena.jipipe.ui.components.SearchTextField
 
getTheme() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
getThemeFromRawSettings() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
getThreadPool() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
getThreads() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
getThreshold() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold
 
getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
getThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
getThreshold_intensity() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
getThumbRendererComponent(JXMultiThumbSlider, int, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
getTightenedTo(PointRange, Point) - Static method in class org.hkijena.jipipe.utils.PointRange
Gets a point within the range that is closest to the target point
getTightenedTo(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange
Gets a point within the range that is closest to the target point range
getTimePerFrame() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getTimer() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getTimestamp() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
 
getTitle() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getTitle() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
getTitleAnnotation() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
getTitleFilterExpression() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI
 
getTitleFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
getTitleLabel() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel
 
getTitleLabel() - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
 
getTokenList(Segment, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker
 
getToMaskAlgorithm() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
getToolBar() - Method in class org.hkijena.jipipe.ui.components.PlotReader
 
getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapEnumItemInfo
 
getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DefaultEnumItemInfo
 
getTooltip(Object) - Method in interface org.hkijena.jipipe.extensions.parameters.primitives.EnumItemInfo
Extracts a custom tooltip for the enum value
getTooltip(Object) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
getTop() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getTrack() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getTraitColumns() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d
 
getTransform() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d
 
getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
 
getTransformation() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
 
getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
 
getTranslateX() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
 
getTranslateY() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
getTranslateZ() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
getTree() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
 
getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI
 
getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree
 
getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI
 
getTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree
 
getTree() - Method in class org.hkijena.jipipe.ui.components.JIPipeProjectOutputTreePanel
 
getTree() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI
 
getTree() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer
 
getTrueDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
 
getTypes() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo
 
getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent
 
getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent
 
getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI.AlgorithmEvent
 
getUi() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
getUiExcludedSubParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getUIFor(ImageJDatatypeImporter) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Generates a UI for the importer
getUIForResultSlot(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Generates a UI for a result data slot
getUIOrder() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
getUIOrder() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
getUIOrder() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Categories are sorted by this value (lower value = first)
getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getUIOrder() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Controls how the parameter is ordered within the user interface
getUiOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getUIOrder() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getUIOrder() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getUISourceOrder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets source UI order
getUnconnectedSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
getUnhiddenRegisteredDataTypes() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns a collection of all unhidden slot data types
getUnhiddenRegisteredDataTypes() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Gets all data types that are not hidden
getUniqueKey(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Gets the unique key of an parameter access
getUniqueStringByDialog(Component, String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils
Continuously asks for an unique string
getUpdateSiteDependencies() - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata
 
getUpdateSiteDependenciesParameter() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
getUpdateSitesToAddAndActivate() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
getUploadedAnnotationsFilter() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
getUrl() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
getUrls() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource
 
getUseOutlinePaintForWhiskers() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the flag that, if true, causes the whiskers to be drawn using the series outline paint.
getUserHow() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException
 
getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
getUserHow() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
getUserHow() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
getUserHow() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
getUserName() - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
getUserSelectedMethod() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
getUserWhat() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException
 
getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
getUserWhat() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
getUserWhat() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
getUserWhat() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
getUserWhere() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException
 
getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
getUserWhere() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
getUserWhere() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
getUserWhy() - Method in interface org.hkijena.jipipe.api.exceptions.UserFriendlyException
 
getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
getUserWhy() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
getUserWhy() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
getUserWhy() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.Entry
 
getValue() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
getValue(String, Class<T>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Gets a parameter value
getValue() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getValue() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm
 
getValue() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
getValue() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionConstant
 
getValue() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
 
getValue() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
 
getValue() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
Returns the current value
getValue() - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource
 
getValue() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
 
getValue() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
 
getValue() - Method in class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent
 
getValue() - Method in class org.hkijena.jipipe.utils.MacroSetting
 
getValueAsDouble(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a table value as double
getValueAsDouble(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a table value as double
getValueAsString(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a table value as string
getValueAsString(int, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns a table value as string
getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
getValueAt(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
getValueAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
getValueAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
getValueAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar
 
getValueB() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar
 
getValueClass() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
getValueReplacement() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
 
getValues() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
getValueToReplace() - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
 
GetVariableFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GetVariableFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GetVariableFunction
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.GreyscalePixel2DExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.PixelCoordinate2DExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpressionVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpressionVariableSource
 
getVariables(JIPipeParameterAccess) - Method in interface org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariableSource
Returns the list of known variables for the user interface.
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpressionVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.variables.UndefinedExpressionParameterVariableSource
 
getVariables(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.WindowQueryExpressionParameterVariableSource
 
getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
getViewerPanel() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
getViewMode() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel
 
getViewPort() - Method in class org.hkijena.jipipe.ui.components.ZoomViewPort.ZoomChangedEvent
 
getVirtualData(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Gets the virtual data container at given row
getVisibility() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
getVisibility() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Returns if the parameter should be visible to users or only stored to JSON
getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
getVisibility() - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
getVisibility() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
getVisibleCompartments() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the list of additional compartments this algorithm is visible in.
getVisibleParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
 
getWebsite() - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
getWebsite() - Method in class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
getWebsite() - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
getWeight() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge
 
getWhiskerWidth() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the width of the whiskers as fraction of the bar width.
getWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
getWidth() - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
getWidthAnnotation() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
getWindow() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowClosedEvent
 
getWindow() - Method in class org.hkijena.jipipe.ui.events.WindowOpenedEvent
 
getWindow() - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver
 
getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
getWindow() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
getWindow() - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench
Returns the window
getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
getWindowsEvents() - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
getWordsToHighlight() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluatorSyntaxTokenMaker
 
getWorkbench() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
getWorkbench() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
getWorkbench() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension
 
getWorkbench() - Method in class org.hkijena.jipipe.ui.extension.MenuExtension
 
getWorkbench() - Method in class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel
 
getWorkDirectory() - Method in class org.hkijena.jipipe.api.JIPipeProject
Gets the folder where the project is currently working in
getWorkDirectory() - Method in class org.hkijena.jipipe.api.JIPipeProject.WorkDirectoryChangedEvent
 
getWorkDirectory() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns the current work directory of this algorithm.
getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent
 
getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent
 
getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent
 
getWorker() - Method in class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent
 
getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent
 
getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent
 
getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent
 
getWorker() - Method in class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent
 
getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
getWrappedGraph() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
 
getWrappedIcon() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
getxAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
getxAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
getxAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
getXyAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
getXyAnchor() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
getyAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
getyAxisFontSize() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
getyAxisLabel() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
getZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
getzAxis() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
getZoom() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
getZoom() - Method in interface org.hkijena.jipipe.ui.components.ZoomViewPort
 
getZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
GlobStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
GlobStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.GlobStringPredicateFunction
 
GradientStop(Color, float) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils.GradientStop
 
GraphAutoLayout - Enum in org.hkijena.jipipe.ui.grapheditor.layout
 
GraphAutoLayoutMethod - Interface in org.hkijena.jipipe.ui.grapheditor.layout
 
GraphCanvasUpdatedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent
 
GraphChangedEvent(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.GraphChangedEvent
 
GraphChangedHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
GraphChangedHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
GraphCompartmentCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
GraphCompartmentCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
GraphCompartmentCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
GraphCompartmentCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
GraphCompartmentPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
GraphCompartmentPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
GraphEditorToolBarButtonExtension - Class in org.hkijena.jipipe.ui.extension
 
GraphEditorToolBarButtonExtension(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension
Creates a new instance
graphEditorToolBarButtonExtensionsFor(JIPipeGraphEditorUI) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
 
GraphEditorUISettings - Class in org.hkijena.jipipe.extensions.settings
All settings for JIPipeGraphEditorUI
GraphEditorUISettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
GraphHistoryChangedEvent(JIPipeGraphHistory) - Constructor for class org.hkijena.jipipe.api.history.JIPipeGraphHistory.GraphHistoryChangedEvent
 
GraphNodeParameterCollectionReference - Class in org.hkijena.jipipe.api.grouping.parameters
 
GraphNodeParameterCollectionReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterCollectionReference
 
GraphNodeParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI
Creates new instance
GraphNodeParameterReference - Class in org.hkijena.jipipe.api.grouping.parameters
References a parameter in a graph
GraphNodeParameterReference() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Creates a new empty instance
GraphNodeParameterReference(GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Creates a copy
GraphNodeParameterReference(JIPipeParameterAccess, JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Instantiates with an existing access within a tree
GraphNodeParameterReferenceAccess - Class in org.hkijena.jipipe.api.grouping.parameters
A parameter access that references to another one, but hides the source
GraphNodeParameterReferenceAccess(GraphNodeParameterReference, JIPipeParameterTree, JIPipeParameterCollection, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
Creates a new instance
GraphNodeParameterReferenceAccessGroup - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterReferenceAccessGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroup
Creates a new instance
GraphNodeParameterReferenceAccessGroupList - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterReferenceAccessGroupList(GraphNodeParameters, JIPipeParameterTree, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccessGroupList
Creates a new instance
GraphNodeParameterReferenceGroup - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterReferenceGroup() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Creates a new instance
GraphNodeParameterReferenceGroup(GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Creates a copy
GraphNodeParameterReferenceGroupUI - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterReferenceGroupUI(GraphNodeParametersUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI
 
GraphNodeParameterReferenceGroupUI.GroupMetadataEditor - Class in org.hkijena.jipipe.api.grouping.parameters
Edits name and description of a GraphNodeParameterReferenceGroup
GraphNodeParameterReferenceUI - Class in org.hkijena.jipipe.api.grouping.parameters
GraphNodeParameterReferenceUI(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReference) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceUI
Creates a new instance
GraphNodeParameters - Class in org.hkijena.jipipe.api.grouping.parameters
Contains a list of GraphNodeParameterReferenceGroup and GraphNodeParameterCollectionReference Stores references to parameters within an JIPipeGraph
GraphNodeParameters() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Creates a new instance
GraphNodeParameters(GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Makes a copy
GraphNodeParametersUI - Class in org.hkijena.jipipe.api.grouping.parameters
Editor component for GraphNodeParameters
GraphNodeParametersUI(JIPipeWorkbench, GraphNodeParameters) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
 
GraphUtils - Class in org.hkijena.jipipe.utils
Helper class for graph
GraphWrapperAlgorithm - Class in org.hkijena.jipipe.api.grouping
An algorithm that wraps another algorithm graph
GraphWrapperAlgorithm(JIPipeNodeInfo, JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
GraphWrapperAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
Copies the algorithm
GraphWrapperAlgorithmInput - Class in org.hkijena.jipipe.api.grouping
 
GraphWrapperAlgorithmInput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput
 
GraphWrapperAlgorithmInput(GraphWrapperAlgorithmInput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput
 
GraphWrapperAlgorithmOutput - Class in org.hkijena.jipipe.api.grouping
 
GraphWrapperAlgorithmOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput
 
GraphWrapperAlgorithmOutput(GraphWrapperAlgorithmOutput) - Constructor for class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput
 
GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
GreyscalePixel2DExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Variable source that allows to address x, y, and value
GreyscalePixel2DExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.GreyscalePixel2DExpressionParameterVariableSource
 
GreyscalePixelsGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
Algorithm that generates ResultsTableData as histogram
GreyscalePixelsGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
Creates a new instance
GreyscalePixelsGenerator(GreyscalePixelsGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
Creates a copy
gridToRealLocation(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
 
gridToRealSize(Dimension, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
 
groupByMenuPath(Collection<Class<? extends JIPipeData>>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Groups the data types by their menu path
groupByMenuPaths(Set<JIPipeNodeInfo>) - Static method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Gets the registered algorithms, grouped by their menu paths
groupByPosition(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Groups the ROI by their image positions
groupByReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Groups the ROI by their reference image
GroupHeaderPanel(String, Icon) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel
 
GroupHeaderPanel(String, Icon) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
 
GroupingExtension - Class in org.hkijena.jipipe.api.grouping
Extension for anything that is related to GraphWrapperAlgorithm
GroupingExtension() - Constructor for class org.hkijena.jipipe.api.grouping.GroupingExtension
 
GroupMetadataEditor(GraphNodeParameterReferenceGroupUI, GraphNodeParameterReferenceGroup) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupUI.GroupMetadataEditor
 
GroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
GroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 

H

handleDefaultAction() - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotRowUI
 
handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI
 
handleDefaultAction() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
Action that is triggered when the user double-clicks on the entry in the table
hasAttachmentOfType(Class<?>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if there is an attachment of given type
hasDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns true if the specified data type class is registered
hasDatatypeWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns true if there is a data type with given ID
hasDefaultConstructor(Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
Returns true if the class has a default constructor
hasEditorFor(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Returns true if there is an editor for the parameter
hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
hashCode() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
hashCode() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
hashCode() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
hashCode() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameterVariable
 
hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
hashCode() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
hasInputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns true if there is an input slot with name
hasInputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Return true if there is an input slot with given name
hasInputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if the algorithm contains an input slot with given name.
hasNodeInfoWithId(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Returns true if the algorithm ID already exists
hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns true if there is an output slot with name
hasOutputSlot(String) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Return true if there is an output slot with given name
hasOutputSlot(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if the algorithm contains an output slot with given name.
Hessian2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around EDM
Hessian2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
Instantiates a new node type.
Hessian2DAlgorithm(Hessian2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
Instantiates a new node type.
HessianSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Segments using a Hessian
HessianSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
HessianSegmentation2DAlgorithm(HessianSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
Copies the algorithm
hexStringToColor(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Converts a hex color string #RRGGBB or #RRGGBBAA to a color
hexStringToColor(String) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Converts a hex color string #RRGGBB or #RRGGBBAA to a color
hideSplash() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
HistogramGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
Algorithm that generates ResultsTableData as histogram
HistogramGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
Creates a new instance
HistogramGenerator(HistogramGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
Creates a copy
HistogramGenerator.MultiChannelMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
Available modes that determine which greyscale value is generated if a multi-channel image is provided
HistogramPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data to generate a histogram plot
HistogramPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
Creates a new instance
HistogramPlotData(HistogramPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
Creates a copy
HistogramPlotData.HistogramType_ - Enum in org.hkijena.jipipe.extensions.plots.datatypes
Available histogram types
Hough_Circle - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils
 
Hough_Circle() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
HoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Segments using a Hough circle transform
HoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
HoughSegmentation2DAlgorithm(HoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
Copies the algorithm
HoverHelpEvent(MarkdownDocument) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.HoverHelpEvent
Creates a new instance
HoverHelpEvent(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEvent
Creates a new instance
HyperbolicCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
HyperbolicCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation
 
HyperbolicSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
HyperbolicSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation
 
HyperbolicTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
HyperbolicTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation
 
HyperstackDimension - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
HyperstackDimensionPairParameter - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
 
HyperstackDimensionPairParameter() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter
 
HyperstackDimensionPairParameter(HyperstackDimension, HyperstackDimension) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter
 
HyperstackDimensionPairParameter(PairParameter<HyperstackDimension, HyperstackDimension>) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter
 
HyperstackDimensionPairParameter.List - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
 

I

ICON_FROM_RESOURCES_CACHE - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
 
ICON_FROM_RESOURCES_CACHE - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
ID - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.DataExporterSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.DefaultCacheDisplaySettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.DefaultResultImporterSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
ID - Static variable in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
IfElseFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
IfElseFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.IfElseFunction
 
IGNORE_CUSTOM - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Whether to ignore all custom parameters
IGNORE_REFLECTION - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Whether to ignore all reflection parameters
IJProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater
Adapter between JIPipe and ImageJ progress implementations
IJProgressAdapter() - Constructor for class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
IlluminationCorrection2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
Applies illumination correction
IlluminationCorrection2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
 
IlluminationCorrection2DAlgorithm(IlluminationCorrection2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
Copies the algorithm
IMAGE_TYPES - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_COLOR - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_COLOR_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_COLOR_RGB - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_GREYSCALE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_GREYSCALE_16U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_GREYSCALE_32F - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_GREYSCALE_8U - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
IMAGE_TYPES_GREYSCALE_MASK - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
ImageCalculator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ImageCalculator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
Instantiates a new node type.
ImageCalculator2DAlgorithm(ImageCalculator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
Instantiates a new node type.
ImageCalculator2DAlgorithm.Operand - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Determines the order of input images
ImageCalculator2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Available math operations
ImageDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ImageDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImageDataPreview
Creates a new renderer
ImageFromMatrix2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
Wrapper around Convolver
ImageFromMatrix2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
Instantiates a new node type.
ImageFromMatrix2DAlgorithm(ImageFromMatrix2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
Creates a copy
ImageJAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.imagejalgorithms
Extension that adds ImageJ2 algorithms
ImageJAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
ImageJCalibrationMode - Enum in org.hkijena.jipipe.utils
 
ImageJDatatypeAdapter - Interface in org.hkijena.jipipe.api.compat
Interface that contains functions that allow conversion between JIPipe and ImageJ data type
ImageJDatatypeImporter - Class in org.hkijena.jipipe.api.compat
Runs a ImageJDatatypeAdapter import operation.
ImageJDatatypeImporter(ImageJDatatypeAdapter) - Constructor for class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter
 
ImageJDatatypeImporterUI - Class in org.hkijena.jipipe.ui.compat
User interface around an ImageJDatatypeAdapter that
ImageJDatatypeImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.ui.compat.ImageJDatatypeImporterUI
 
ImageJDataTypesExtension - Class in org.hkijena.jipipe.extensions.imagejdatatypes
Provides ImageJ data types
ImageJDataTypesExtension() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
ImageJDataTypesSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes
 
ImageJDataTypesSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
ImageJMacro - Class in org.hkijena.jipipe.extensions.parameters.scripts
Encapsulates ImageJ macro code to be detected by the parameter system
ImageJMacro() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro
 
ImageJMacro(ImageJMacro) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ImageJMacro
 
ImageJUtils - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Utility functions for ImageJ
ImageJUtils.GradientStop - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
ImagePlus2DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color
8-bit color 2D image
ImagePlus2DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData
 
ImagePlus2DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color
Colored 2D image
ImagePlus2DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData
 
ImagePlus2DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color
RGB colored 2D image
ImagePlus2DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData
 
ImagePlus2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2
2D image
ImagePlus2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
 
ImagePlus2DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
16-bit greyscale 2D image
ImagePlus2DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData
 
ImagePlus2DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
32 bit float greyscale 2D image
ImagePlus2DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData
 
ImagePlus2DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
8-bit greyscale 2D image
ImagePlus2DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData
 
ImagePlus2DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
Greyscale 2D image
ImagePlus2DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData
 
ImagePlus2DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
8-bit mask 2D image
ImagePlus2DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData
 
ImagePlus3DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color
8-bit color 3D image
ImagePlus3DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData
 
ImagePlus3DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color
Color 3D image
ImagePlus3DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData
 
ImagePlus3DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color
RGB color 3D image
ImagePlus3DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData
 
ImagePlus3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3
3D image
ImagePlus3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
 
ImagePlus3DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
16-bit greyscale 3D image
ImagePlus3DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData
 
ImagePlus3DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
32-bit floating point greyscale 3D image
ImagePlus3DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData
 
ImagePlus3DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
8-bit greyscale 3D image
ImagePlus3DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData
 
ImagePlus3DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
Greyscale 3D image
ImagePlus3DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData
 
ImagePlus3DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
8-bit mask 3D image
ImagePlus3DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData
 
ImagePlus4DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color
8-bit color 4D image
ImagePlus4DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData
 
ImagePlus4DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color
Color 4D image
ImagePlus4DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData
 
ImagePlus4DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color
RGB color 4D image
ImagePlus4DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData
 
ImagePlus4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4
4D image
ImagePlus4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
 
ImagePlus4DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
16-bit greyscale 4D image
ImagePlus4DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData
 
ImagePlus4DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
32-bit floating point greyscale 4D image
ImagePlus4DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData
 
ImagePlus4DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
8-bit greyscale 4D image
ImagePlus4DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData
 
ImagePlus4DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
Greyscale 4D image
ImagePlus4DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData
 
ImagePlus4DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
Mask 4D image
ImagePlus4DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData
 
ImagePlus5DColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color
8-bit color 5D image
ImagePlus5DColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData
 
ImagePlus5DColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color
Color 5D image
ImagePlus5DColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData
 
ImagePlus5DColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color
RGB color 5D image
ImagePlus5DColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData
 
ImagePlus5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5
5D image
ImagePlus5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
 
ImagePlus5DGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
16-bit greyscale 5D image
ImagePlus5DGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData
 
ImagePlus5DGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
32-bit floating point greyscale image
ImagePlus5DGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData
 
ImagePlus5DGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
8-bit greyscale 5D image
ImagePlus5DGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData
 
ImagePlus5DGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
Greyscale 5D image
ImagePlus5DGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData
 
ImagePlus5DGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
Mask 5D image
ImagePlus5DGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData
 
ImagePlusColor8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
8-bit color image without dimension.
ImagePlusColor8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData
 
ImagePlusColorData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
Colored image without dimension.
ImagePlusColorData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
 
ImagePlusColorRGBData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
RGB colored image without dimension.
ImagePlusColorRGBData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
 
ImagePlusData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes
ImageJ image
ImagePlusData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
ImagePlusDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Imports an ImagePlus
ImagePlusDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImagePlusDataImporterUI
 
ImagePlusDataImportIntoImageJOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ImagePlusDataImportIntoImageJOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
ImagePlusDataImportIntoJIPipeOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ImagePlusDataImportIntoJIPipeOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
ImagePlusDataToCLIJImageDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Converter from ImagePlusData to CLIJImageData
ImagePlusDataToCLIJImageDataConverter() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
ImagePlusFFT2DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
2D image in frequency space
ImagePlusFFT2DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData
Creates a new instance
ImagePlusFFT3DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
3D image in frequency space
ImagePlusFFT3DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData
Creates a new instance
ImagePlusFFT4DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
4D image in frequency space
ImagePlusFFT4DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData
Creates a new instance
ImagePlusFFT5DData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
5D image in frequency space
ImagePlusFFT5DData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData
Creates a new instance
ImagePlusFFTData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
Image in frequency space
ImagePlusFFTData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData
Creates a new instance
ImagePlusFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources
Loads an image data from a file via IJ.openFile()
ImagePlusFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
ImagePlusFromFile(ImagePlusFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
Copies the algorithm
ImagePlusFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ImagePlusFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
ImagePlusFromGUI(ImagePlusFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
ImagePlusGreyscale16UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
16-bit greyscale image without dimension.
ImagePlusGreyscale16UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
 
ImagePlusGreyscale32FData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
32 bit float greyscale image without dimension.
ImagePlusGreyscale32FData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
 
ImagePlusGreyscale8UData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
8-bit greyscale image without dimension.
ImagePlusGreyscale8UData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
 
ImagePlusGreyscaleData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
Greyscale image without dimension.
ImagePlusGreyscaleData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
 
ImagePlusGreyscaleMaskData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
8-bit mask without dimension.
ImagePlusGreyscaleMaskData(ImagePlus) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData
 
ImagePlusResultImportRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ImagePlusResultImportRun(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
ImagePlusToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ImagePlusToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI
 
ImagePlusToGUI(ImagePlusToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI
 
ImagePlusToOMEImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
ImagePlusToOMEImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
ImagePropertiesToAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
Adds data annotations that contain the image properties
ImagePropertiesToAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
Creates a new instance
ImagePropertiesToAnnotationAlgorithm(ImagePropertiesToAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
Creates a copy
ImageQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.parameters
 
ImageQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource
 
ImageRoiProcessorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
An algorithm that processes ROIListData to or ROIListData and ImagePlusData to the output data
ImageRoiProcessorAlgorithm(JIPipeNodeInfo, Class<? extends JIPipeData>, String) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
Creates a new instance
ImageRoiProcessorAlgorithm(ImageRoiProcessorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
Creates a copy
ImageSliceIndex - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Helper class that identifies an image slice.
ImageSliceIndex(int, int, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Initializes a slice index
ImageSliceIndex() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Initializes a slice index where all values are -1
ImageSliceIndex(ImageSliceIndex) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Creates a copy
ImagesNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
ImagesNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
ImageStackFromFolder - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
Loads an image data from a file via IJ.openFile()
ImageStackFromFolder(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
ImageStackFromFolder(ImageStackFromFolder) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
Copies the algorithm
ImageStatisticsSetParameter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
A DynamicSetParameter that contains image statistics measurements.
ImageStatisticsSetParameter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
ImageStatisticsSetParameter(ImageStatisticsSetParameter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
ImageStatisticsSetParameter(Set<Measurement>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
ImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
Converts ImageJ data type into each other
ImageTypeConverter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter
Creates a new instance
ImageTypeConverter(ImageTypeConverter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter
Copies the algorithm
ImageViewerLUTEditor - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
Based on JXGradientChooser
ImageViewerLUTEditor(ImageViewerPanel, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
ImageViewerPanel - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanel() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
ImageViewerPanelCanvas - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanelCanvas() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
ImageViewerPanelCanvas.PixelHoverEvent - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanelDisplayRangeControl - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanelDisplayRangeControl(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
ImageViewerPanelDisplayRangeControl.DisplayRangeStop - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanelDisplayRangeControl.ThumbRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerPanelDisplayRangeControl.TrackRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerStackExporterRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerStackExporterRun(ImageViewerPanel, Path, String, String) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
ImageViewerVideoExporterRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerVideoExporterRun(ImageViewerPanel, Path, ImageSliceIndex, HyperstackDimension, int, AVICompression, int) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
ImageViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
ImageViewerWindow() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
ImageViewerWindow(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
ImgPlusDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Adapter between ImagePlus and ImagePlusData
ImgPlusDataImageJAdapter(Class<? extends ImagePlusData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
ImplicitImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
An implicit converter between ImagePlusData types
ImplicitImageTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
ImplicitPathTypeConverter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Converts between the PathData types (non-trivial conversions)
ImplicitPathTypeConverter(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
ImplicitResultsTableDataConverter - Class in org.hkijena.jipipe.extensions.annotation.algorithms
ImplicitResultsTableDataConverter() - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
ImportCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
ImportCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
ImportData - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
 
ImportData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
ImportData(ImportData) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
importData(Path, Class<T>) - Static method in class org.hkijena.jipipe.JIPipe
Imports data of given data type from its output folder.
importData(PlotDataSeries) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Adds data into the data storage
importData(TableModel, String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Imports data from a table model
importExistingPlot(PlotData) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Imports an existing plot data into this builder.
importFrom(Path) - Static method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.FileData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.FolderData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColor8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColor8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColor8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColor8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColor8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Loads Roi from a path that contains a zip/roi file
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
 
importFrom(Path, Class<T>) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.JsonData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.StringData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.strings.XMLData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
importFrom(Path) - Static method in class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData
 
importFromImageJ(String) - Method in interface org.hkijena.jipipe.api.compat.ImageJDatatypeAdapter
Imports JIPipe data from an ImageJ window
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageDataImageJAdapter
 
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
 
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ImgPlusDataImageJAdapter
 
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
importFromImageJ(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
ImportImageJPathDataOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ImportImageJPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
importImagePlusFrom(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
importImages(ImportLibrary, OMEROMetadataStoreClient, ImportConfig, ImportCandidates) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
Copy of importCandidates in ImportLibrary that returns the list of uploaded images.
ImportJIPipeProjectDataOperation - Class in org.hkijena.jipipe.extensions.utils.display
 
ImportJIPipeProjectDataOperation() - Constructor for class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
ImportJIPipeSlotFolderAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
ImportJIPipeSlotFolderAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
ImportJIPipeSlotFolderAlgorithm(ImportJIPipeSlotFolderAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
importLUT(LUT) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition
 
importParametersFromProject(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm
 
importROI(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
Imports and displays a ROI on the current image
importROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
importROIs(ROIListData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
importTableFromCSV(Path, JIPipeProjectWorkbench) - Static method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
Imports a table from CSV and creates a new JIPipeTableEditor tab
INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
INACTIVE_CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter
 
include(RowFilter.Entry<? extends TableModel, ? extends Integer>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModelFilter
 
incrementProgress() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
indented - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
Index() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
Creates a new instance.
Index(int, int) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
Creates a new instance and initializes it
InequalityPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
InequalityPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.InequalityPredicateOperator
 
info(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
info(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
InheritanceConversionEditorUI - Class in org.hkijena.jipipe.ui.components
Editor for an inheritance conversion stored in an JIPipeDataSlotInfo
InheritanceConversionEditorUI(Map<JIPipeDataInfo, JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.InheritanceConversionEditorUI
 
inheritedSlot() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
InheritedSlotListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders an available entry for inherited slot in JIPipeDataSlotInfo
InheritedSlotListCellRenderer(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.InheritedSlotListCellRenderer
 
initialise(Graphics2D, Rectangle2D, CategoryPlot, int, PlotRenderingInfo) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Initialises the renderer.
initialize() - Method in class org.hkijena.jipipe.installer.linux.ui.SetupPanel
 
initialize() - Method in class org.hkijena.jipipe.JIPipe
Initializes JIPipe.
initialize(ExtensionSettings, JIPipeRegistryIssues) - Method in class org.hkijena.jipipe.JIPipe
Initializes JIPipe
initialize() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand
 
initializeAddDataSourceMenu(JIPipeGraphEditorUI, JMenu, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
Initializes a menu that adds data sources
initializeAddNodesMenus() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI
Initializes the "Add nodes" area
initializeAddNodesMenus(JIPipeGraphEditorUI, JMenuBar, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
Initializes the "Add nodes" menus
initializeCLIJ(Context, boolean) - Static method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
Initializes CLIJ based on the settings
initializeCommonActions() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Initializes the tool bar
initializeMenuForCategory(JIPipeGraphEditorUI, JMenu, JIPipeNodeTypeCategory, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
Initializes a menu for one algorithm category
InputImagesToMontage - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
 
InputImagesToMontage(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
InputImagesToMontage(InputImagesToMontage) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
InputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections
Parameter that holds a value for each data slot
InputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection
Creates a new instance
insertNode(String, JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Inserts an algorithm into the graph
insertNode(JIPipeGraphNode, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Inserts an algorithm into the graph.
insertUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener
 
insertUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
install() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
Activates the theme.
installContextActionsInto(JToolBar, Set<JIPipeNodeUI>, List<NodeUIContextAction>, JIPipeGraphCanvasUI) - Static method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
installDefaults() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
InstallerRun - Class in org.hkijena.jipipe.installer.linux.api
 
InstallerRun() - Constructor for class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
installEvents() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Install registration events.
installExtension(JIPipeWorkbench, JIPipeJsonExtension, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Installs a loaded project
installExtensionFromFile(JIPipeWorkbench, Path, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Loads a project and installs it
installExtensions(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Allows the user to select files to install
installMenuExtension(JIPipeWorkbench, JMenu, MenuTarget, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils
Installs an extension menu
installNow() - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow
 
INSTANCE - Static variable in class org.hkijena.jipipe.utils.NaturalOrderComparator
 
InstantFuture<T> - Class in org.hkijena.jipipe.utils
A dummy Future
InstantFuture(T) - Constructor for class org.hkijena.jipipe.utils.InstantFuture
Initializes a new instance
IntegerAndIntegerPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames an integer into another integer
IntegerAndIntegerPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter
Creates a new instance
IntegerAndIntegerPairParameter(IntegerAndIntegerPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter
Creates a copy
IntegerAndIntegerPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
A collection of multiple IntegerAndIntegerPairParameter
IntegerList - Class in org.hkijena.jipipe.extensions.parameters.primitives
A list of Integer
IntegerList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList
Creates a new empty list
IntegerList(IntegerList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntegerList
Creates a copy
IntegerRange - Class in org.hkijena.jipipe.extensions.parameters.generators
Parameter that contains an integer range as string.
IntegerRange() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
Creates a new instance with a null value
IntegerRange(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
Creates a new instance and initializes it
IntegerRange(IntegerRange) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
Creates a copy
IntegerRange.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.generators
Deserializes the reference from a string
IntegerRange.Serializer - Class in org.hkijena.jipipe.extensions.parameters.generators
Serializes the reference as ID
IntegerRangeParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.generators
Editor for IntegerRange
IntegerRangeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI
 
IntegerRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Integer
IntegerRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterGenerator
Creates a new instance
IntegrateColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
IntegrateColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
Creates a new instance
IntegrateColumnsAlgorithm(IntegrateColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
Creates a copy
IntegratingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
A ColumnOperation that creates an integrated output (meaning that the output only contains one entry)
IntegratingColumnOperationEntry(String, String, IntegratingColumnOperation) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.IntegratingColumnOperationEntry
Creates a new entry
IntegratingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors
A parameter that models processing an input column via an integration function and generating an output column
IntegratingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter
 
IntegratingTableColumnProcessorParameter(IntegratingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter
 
IntegratingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
 
IntegratingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList
Creates a new instance
IntegratingTableColumnProcessorParameterList(IntegratingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.IntegratingTableColumnProcessorParameterList
Creates a copy
InternalGradientSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Internal gradient segmenter
InternalGradientSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
InternalGradientSegmentation2DAlgorithm(InternalGradientSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
Copies the algorithm
InternalNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
InternalNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
InterpolationMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
Available interpolation methods
interruptThreads(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
intersect(RectangularLine) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
Returns true if this line intersects with the other line
intersectWith(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility
Gets the lower visibility of this one one the other one
IntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi
A parameter that is intended to set or scale an integer
IntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
Creates a new instance with default values
IntModificationParameter(int, double, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
IntModificationParameter(IntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
Creates a copy
IntModificationParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi
IntModificationParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI
 
IntParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Integer
IntParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
IntPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Integer
IntPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
IntRangeAndIntegerPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames an integer into another integer
IntRangeAndIntegerPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter
Creates a new instance
IntRangeAndIntegerPairParameter(IntRangeAndIntegerPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter
Creates a copy
IntRangeAndIntegerPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
A collection of multiple IntRangeAndIntegerPairParameter
INVALID_FILESYSTEM_CHARACTERS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
 
INVALID_FILESYSTEM_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils
 
INVALID_JSONIFY_CHARACTERS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
 
INVALID_JSONIFY_CHARACTERS - Static variable in class org.hkijena.jipipe.utils.StringUtils
 
InvertColorsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Wrapper around ImageProcessor
InvertColorsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm
Instantiates a new node type.
InvertColorsAlgorithm(InvertColorsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm
Instantiates a new node type.
InvertFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
InvertFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.InvertFunction
 
invertSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
InvertSelectionNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
InvertSelectionNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
invokeMethod(Object, String, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
Calls a function and returns its output
IOInterfaceAlgorithm - Class in org.hkijena.jipipe.api.compartments.algorithms
Algorithm that passes the input to the output
IOInterfaceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Creates a new instance.
IOInterfaceAlgorithm(IOInterfaceAlgorithm) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Creates a copy of the other algorithm
isAddAsAnnotations() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
 
isAddContextActionsToContextMenu() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isAddFileExtension() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
isAddKeyValuePairsAsAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
isAddNameToTable() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
isAddToSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI.AlgorithmSelectedEvent
 
isAllowCache() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
isAllowInheritedOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
isAllowInheritedOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
isAllowSkipAlgorithmsWithoutInput() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
isAllowUserModification() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
isAnnotateSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
isAnnotateWithChannelIndex() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
isAnnotateWithSlotName() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
isAppend() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
isAppendDataTypeAsMetadata() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
isAppendDataTypeUsesRealDataType() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
isAppendDirectoryNameToTarget() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
isApplyDespeckle() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
isApplyFirstCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
isApplyGaussian() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
isApplyInternalGradient() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
isApplyMerging() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
isApplyPerChannel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
isApplyPerFrame() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
 
isApplyPerSlice() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
isApplySecondCLAHE() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
isApplyToAllPlanes() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
isArray() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns true if the value is an array
isAskOnDeleteCompartment() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isAskOnDeleteNode() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isAskOnDeleteParameter() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isAssembleTemplates() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
isAssignableTo(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
More powerful variant of Class.isAssignableFrom that supports primitives.
isAttachOnlyNonDefaultParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
isAttachParameterAnnotations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
isAutoCalibrateAfterPulling() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
isAutoClamp() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
isAutoSaveLastDisplay() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
isAutoSaveLastImporter() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
isAutoScale() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isAutoScale() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isBlackBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
isBlackBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
 
isCancel() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent
 
isCanceled() - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
isCancelled() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
isCancelled() - Method in class org.hkijena.jipipe.utils.InstantFuture
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
isCellEditable(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
isCollapsed() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
isCompareAbsolute() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
isCompatible(JIPipeNodeInfo) - Static method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
Returns true if an algorithm can be run in a single ImageJ algorithm run
isConcatenate() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isConcatenate() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isContinueLoading() - Method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog
 
isConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns true if the input data type can be converted into the output data type.
isCorrectCorners() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
isCreateComposite() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
isCreateLauncher() - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
isCrop() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isCrop() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isCropC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
isCropT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
isCropXY() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
isCropZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
isCurrentlyRunning() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
isDark() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
 
isDarkBackground() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
isDataUnique() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns true if all rows are unique according to their traits
isDeduplicate() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
isDiscardExistingAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
isDone() - Method in class org.hkijena.jipipe.utils.InstantFuture
 
isDoScaling() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
isDrawFilledOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
isDrawLabel() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
isDrawOutline() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
isDrawOutsideEdges() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
isDrawOver() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
isDuplicateImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
isEmpty() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
 
isEmpty() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
 
isEmpty() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
isEnableAutoSave() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
isEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
isEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
isEnabled() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
isEnableLayoutHelper() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isExcludeEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
isExcludeOnEdges() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
isExcludeSelected() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
isExpandCanvas() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
isExtractRois() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isExtractRois() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isFastMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
isFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Returns if the string does not contain invalid characters.
isFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Returns if the string does not contain invalid characters.
isFlipTemplateHorizontally() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
isFlipTemplateVertically() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
isFloatingPointOutput() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
isForceReflection() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
isFullPath() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
isGenerateCachePreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
isGenerateResultPreviews() - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
isGeneratingTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns true if the parameter is a generating table column.
isHasParameterSlot() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
isHeavy(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Returns true if this data is considered as having a large size
isHeavy() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
isHidden(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.api.data.JIPipeData
Returns true if this data should be be accessible by the user
isHidden() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
isHidden() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
isHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
isHidden() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Returns true if this algorithm should not appear in the list of available algorithms.
isHidden(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns true if the data type with given ID is hidden
isHidden() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
isIgnoreC() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
isIgnoreCustomParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
isIgnoreImportedDataAnnotations() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
isIgnoreImportedDataAnnotations() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
isIgnoreInputAnnotations() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
isIgnoreInputAnnotations() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
isIgnoreInvalidSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
isIgnoreMissingAnnotations() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
isIgnoreMissingChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
isIgnoreMissingColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
isIgnoreMissingMetadata() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
isIgnoreMissingSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
isIgnoreReflectionParameters() - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
isIgnoreT() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
isIgnoreValidation() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
isIgnoreZ() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
isIncludeHoles() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
isIncomplete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Returns true if there is at least one slot that has no rows attached to it
isInitialized() - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
isInitializing() - Method in class org.hkijena.jipipe.JIPipe
 
isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
isInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
isInputIsEDM() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
isInputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
isInputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
isInstantiated() - Static method in class org.hkijena.jipipe.JIPipe
 
isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
isInvert() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
isInvertThreshold() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
isKeepAnnotationColumns() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables
 
isKeepSameChannelCount() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
isLabels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
isLabels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
isLargeVirtualDataTypesByDefault() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
isLayoutHelperEnabled() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
isLoadFromCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
isLoadFromCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
isLocal() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
isLogarithmic() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
isMaximizeWindows() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isMeanVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the flag that controls whether or not the mean indicator is draw for each item.
isMedianVisible() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Returns the flag that controls whether or not the median indicator is draw for each item.
isModern() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
 
isMutableTableColumn(Class<? extends JIPipeData>) - Static method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns true if the parameter is a mutable table column.
isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
isNeedsToExist() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
isNeverAskOnClosingTabs() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isNoLUT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isNormalize() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
isNullOrEmpty(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Returns true if the string is null or empty
isNullOrEmpty(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Returns true if the string is null or empty
isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
isNumeric(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns true if a column is numeric
isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
isNumeric() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns true if this column contains double entries.
isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
isNumeric() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
IsolateNodesUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
IsolateNodesUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
isOnlyActiveImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
isOnlyFirst() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
isOpenAllSeries() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
isOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
isOutputFiles() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
isOutputFolders() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
isOutputNonExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
isOutputOverlaps() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
isOutputRoi() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
isOutputSlotsSealed() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
isOutputSlotsSealed() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
isOverlapping() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Returns true if this component overlaps with another component
isOverrideReferenceImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
isPadded() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
isParallelizationEnabled() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm
 
isParallelizationEnabled() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
isParameterAnnotationsUseInternalNames() - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
isPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
isPostprocessor() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Indicates if the node should be run after all other nodes.
isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
isPreferAssociatedImage() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
isPreprocessor() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Indicates if the node should be run before all other nodes.
isPreSmoothing() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
isPreventUpdateSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
isPrimitiveWrapperOf(Class<?>, Class<?>) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
Returns true if the class is a primitive wrapper
isProjectAllHyperstackTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
isProjectInfoGeneratesPreview() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isRealTimeRunEnabled() - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
isRecalibrate() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
 
isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
isRecursive() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
isRecursiveFollowsLinks() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
isRegistered(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
 
isRemoveColumn() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
isRemoveExtensions() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
isRemoveLut() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
isRemoveLut() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
isRemoveOutputAnnotations() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
isRenderedOrRendering() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview
 
isReplaceIfExists() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
isRestoreTabs() - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
isRestrictToROI() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
isRunnable() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
isRunnable() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns true if nodes of this category can be run in a single run
isRunningOrEnqueued(JIPipeRunnable) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Determines if a runnable is enqueued or running
isRunningOrEnqueued(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Determines if a runnable is enqueued or running
isSaveOutputs() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
isSaveOutputs() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
isSaveOutputs() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
isSaveRGBWithImageJ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
isSaveROI() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isSeparateChannels() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
isShowingInOverhang() - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
If true, this item is shown in the toolbar overhang menu instead of the toolbar itself.
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
isShowingInOverhang() - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
isShowIntroduction() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isShowIntroductionTour() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isShowParameterSearchBar() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isShowProjectInfo() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isSilent() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
If true, exceptions are discarded
isSilent() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
isSingle() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Returns true if each slot only has one row
isSkipExisting() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
isSkipIncompleteDataSets() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
isSkipInvalid() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
isSortedStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
isSortFilesNumerically() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
 
isSplit() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
 
isSplitAfterwards() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
isSplitAtJunctions() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
isSplitByInputSlots() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
isSplitC() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isSplitChannels() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isSplitChannels() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isSplitFocalPlanes() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isSplitFocalPlanes() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isSplitSlices() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
isSplitT() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isSplitTimePoints() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isSplitTimePoints() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isSplitZ() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
isStitchTiles() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isStitchTiles() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isStoredAsResource() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
isStoreToCache() - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
isStoreToCache() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
isStrict() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
isStrictMode() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
isSubtract() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
isSuccess() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry
 
isSwapDimensions() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
isSwapDimensions() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
isSwitchPanningDirection() - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
isTriviallyConvertible(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Returns true if the input data type can be trivially converted into the output data type.
isTrySolveJunctions() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
isUiHidden() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
Determines if the edge should be shown in UI
isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI
 
isUILabelEnabled() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
If true, the ParameterPanel will display a label with the parameter name next to this UI.
isUniqueStackIds() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
isUploadAnnotations() - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
isUseAveraging() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
isUseBioFormats() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
isUseExactValue() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
isUseNativeChooser() - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
isUseNaturalSortOrder() - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
isUserCanDisconnect() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
 
isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
isUserRemovable() - Method in interface org.hkijena.jipipe.extensions.tables.datatypes.TableColumn
Returns if users can remove this source
isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
isUserRemovable() - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
isValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
 
isValidateImageJDependencies() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
isValidateNodeTypes() - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
isValidateOnSave() - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
isValidName(String) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Returns true if the provided string is a valid slot name
isValidVariableName(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils
Returns true if the variable name is valid
isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
isVirtual() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
isVirtualCache() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
isVirtualMode() - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
isVisible(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Returns if the parameter is visible
isVisible() - Method in class org.hkijena.jipipe.utils.MacroFlag
 
isVisibleIn(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if this algorithm is visible in the specified container compartment
isVisibleIn(JIPipeParameterVisibility) - Method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility
Returns true if this visibility is visible in a container with a minimum visibility
isVisibleIn(Roi, ImageSliceIndex, boolean, boolean, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Returns true if the ROI is visible at given slice index
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
isVisibleInCompartmentGraph() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
If the category should be available in the compartment graph editor
isVisibleInGraph() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxMenuExtension
 
isVisibleInGraph() - Method in class org.hkijena.jipipe.ui.extension.GraphEditorToolBarButtonExtension
Override this method to determine if this button should be available for a graph
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
isVisibleInGraphCompartment() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
If the category should be available in the graph compartment editor
isWithCompartmentAndAlgorithm() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
isWithLegend() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
isWithMetadataKeys() - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
isWithNonMaximaSuppression() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
isWithParents() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
 
italic - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
itemDone(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
ITERATING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
IteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python
An algorithm that allows to run Python code
IteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
Creates a new instance
IteratingPythonScriptAlgorithm(IteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
Creates a copy

J

JIPipe - Class in org.hkijena.jipipe
A scijava service that discovers JIPipe plugins in the classpath
JIPipe() - Constructor for class org.hkijena.jipipe.JIPipe
 
JIPipe.DatatypeRegisteredEvent - Class in org.hkijena.jipipe
Triggered when a new data type is registered
JIPipe.ExtensionContentAddedEvent - Class in org.hkijena.jipipe
Generated when content is added to an JIPipeJsonExtension
JIPipe.ExtensionContentRemovedEvent - Class in org.hkijena.jipipe
Generated when content is removed from an JIPipeJsonExtension
JIPipe.ExtensionDiscoveredEvent - Class in org.hkijena.jipipe
Triggered when a new extension was discovered
JIPipe.ExtensionRegisteredEvent - Class in org.hkijena.jipipe
Triggered by JIPipeRegistry when an extension is registered
JIPipe.NodeInfoRegisteredEvent - Class in org.hkijena.jipipe
Triggered when an algorithm is registered
JIPIPE_DEPENDENCY_URLS - Static variable in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
JIPipeAlgorithm - Class in org.hkijena.jipipe.api.nodes
An JIPipeGraphNode that contains a non-empty workload.
JIPipeAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Initializes a new node type instance and sets a custom slot configuration
JIPipeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Initializes a new node type instance
JIPipeAlgorithm(JIPipeAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Creates a copy
JIPipeAlgorithm.StateSerializer - Class in org.hkijena.jipipe.api.nodes
Serializer used by getStateId() It automatically skips name, compartment, description, slot configuration, and UI parameters that are not relevant to the state
JIPipeAlgorithmCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache
UI around an JIPipeRun result
JIPipeAlgorithmCacheBrowserUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI
 
JIPipeAlgorithmCacheTree - Class in org.hkijena.jipipe.ui.cache
Displays a tree that contains all cached items of a state
JIPipeAlgorithmCacheTree(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree
 
JIPipeAlgorithmCompendiumUI - Class in org.hkijena.jipipe.ui.compendium
A browsable list of algorithms with full documentation
JIPipeAlgorithmCompendiumUI() - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeAlgorithmCompendiumUI
Creates a new instance
JIPipeAlgorithmGraphHistorySnapshot - Interface in org.hkijena.jipipe.api.history
 
JIPipeAlgorithmIconRef - Class in org.hkijena.jipipe.extensions.parameters.references
Used by JsonNodeInfo to setup icons
JIPipeAlgorithmIconRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef
Creates a new instance
JIPipeAlgorithmIconRef(JIPipeAlgorithmIconRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef
Copies an instance
JIPipeAlgorithmIconRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references
JIPipeAlgorithmIconRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references
JIPipeAlgorithmIconRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors
JIPipeAlgorithmIconRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI
 
JIPipeAlgorithmListCellRenderer - Class in org.hkijena.jipipe.ui.components
JIPipeAlgorithmListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeAlgorithmListCellRenderer
Creates a new renderer
JIPipeAlgorithmSourceFinderAlgorithmUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
UI for finding algorithms
JIPipeAlgorithmSourceFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Creates an algorithm UI for one target algorithm
JIPipeAlgorithmSourceFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Creates an algorithm UI for one target algorithm
JIPipeAlgorithmSourceFinderSlotUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
UI for one slot in the algorithm finder
JIPipeAlgorithmSourceFinderSlotUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeDataSlot, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderSlotUI
Creates a slot UI
JIPipeAlgorithmSourceFinderUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
A user interface to find a matching algorithm for the specified target slot
JIPipeAlgorithmSourceFinderUI(JIPipeGraphCanvasUI, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI
Creates a new UI
JIPipeAlgorithmSourceRanking - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
Ranks JIPipeNodeInfo or JIPipeGraphNode instances It ranks by following values: - search string (node name) - search string (node description) - data type compatibility (0 = not, -1=nontrivial, -2=trivial, -3=exact match) - already occupied or not (no = 0, yes = 1)
JIPipeAlgorithmSourceRanking(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceRanking
 
JIPipeAlgorithmTargetFinderAlgorithmUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
UI for finding algorithms
JIPipeAlgorithmTargetFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Creates an algorithm UI for one target algorithm
JIPipeAlgorithmTargetFinderAlgorithmUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Creates an algorithm UI for one target algorithm
JIPipeAlgorithmTargetFinderSlotUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
UI for one slot in the algorithm finder
JIPipeAlgorithmTargetFinderSlotUI(JIPipeGraphCanvasUI, JIPipeDataSlot, JIPipeDataSlot, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderSlotUI
Creates a slot UI
JIPipeAlgorithmTargetFinderUI - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
A user interface to find a matching algorithm for the specified target slot
JIPipeAlgorithmTargetFinderUI(JIPipeGraphCanvasUI, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI
Creates a new UI
JIPipeAlgorithmTargetRanking - Class in org.hkijena.jipipe.ui.grapheditor.algorithmfinder
Ranks JIPipeNodeInfo or JIPipeGraphNode instances It ranks by following values: - search string (node name) - search string (node description) - data type compatibility (0 = not, -1=nontrivial, -2=trivial, -3=exact match) - already occupied or not (no = 0, yes = 1)
JIPipeAlgorithmTargetRanking(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetRanking
 
JIPipeAnnotation - Class in org.hkijena.jipipe.api.data
A single annotation
JIPipeAnnotation() - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation
Creates an empty instance
JIPipeAnnotation(String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation
Initializes a new instance
JIPipeAnnotation(String, Collection<String>) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation
Creates a new instance from an array.
JIPipeAnnotation(String, String[]) - Constructor for class org.hkijena.jipipe.api.data.JIPipeAnnotation
Creates a new instance from an array.
JIPipeAnnotationMergeStrategy - Enum in org.hkijena.jipipe.api.data
Determines how annotations are merged
JIPipeApplicationSettingsUI - Class in org.hkijena.jipipe.ui.settings
JIPipeApplicationSettingsUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeApplicationSettingsUI
Creates a new instance
JIPipeAsyncResultDataPlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis
A JIPipeResultDataSlotPreview that uses a SwingWorker to load previews in a separate thread.
JIPipeAsyncResultDataPlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview
Creates a new renderer
JIPipeAuthorMetadata - Class in org.hkijena.jipipe.api
Models an author with affiliations
JIPipeAuthorMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata
Creates a new instance
JIPipeAuthorMetadata(String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata
Initializes the instance
JIPipeAuthorMetadata(JIPipeAuthorMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata
Makes a copy
JIPipeAuthorMetadata.List - Class in org.hkijena.jipipe.api
 
JIPipeAuthorMetadataParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util
 
JIPipeAuthorMetadataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI
Creates new instance
JIPipeCacheBrowserUI - Class in org.hkijena.jipipe.ui.cache
UI around an JIPipeRun result
JIPipeCacheBrowserUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI
 
JIPipeCacheDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache
UI that displays a JIPipeDataSlot that is cached
JIPipeCacheDataSlotTableUI(JIPipeProjectWorkbench, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI
 
JIPipeCacheDataSlotTableUI.DataSlotTableModel - Class in org.hkijena.jipipe.ui.cache
Wraps around a JIPipeDataSlot to display a "toString" column
JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.cache
JIPipeCachedDataPreview - Class in org.hkijena.jipipe.ui.cache
A component that acts as table cell (or other component) that generates a preview of a cached JIPipeData Preview generation is put into its own thread.
JIPipeCachedDataPreview(Component, JIPipeVirtualData, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview
Creates a new instance
JIPipeCachedSlotToFilesByMetadataExporterRun - Class in org.hkijena.jipipe.ui.cache
 
JIPipeCachedSlotToFilesByMetadataExporterRun(JIPipeWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
JIPipeCachedSlotToOutputExporterRun - Class in org.hkijena.jipipe.ui.cache
 
JIPipeCachedSlotToOutputExporterRun(JIPipeWorkbench, Path, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
JIPipeCacheManagerUI - Class in org.hkijena.jipipe.ui.cache
UI that monitors the queue
JIPipeCacheManagerUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI
Creates new instance
JIPipeCacheMultiDataSlotTableUI - Class in org.hkijena.jipipe.ui.cache
UI that displays a JIPipeDataSlot that is cached
JIPipeCacheMultiDataSlotTableUI(JIPipeProjectWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI
 
JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer - Class in org.hkijena.jipipe.ui.cache
Renders the column header
JIPipeCacheSlotDataSource - Class in org.hkijena.jipipe.api.data
 
JIPipeCacheSlotDataSource(JIPipeDataSlot, int) - Constructor for class org.hkijena.jipipe.api.data.JIPipeCacheSlotDataSource
 
JIPipeCacheStateTreeCellRenderer - Class in org.hkijena.jipipe.ui.cache
Renders the tree in JIPipeResultAlgorithmTree
JIPipeCacheStateTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheStateTreeCellRenderer
Creates new renderer
JIPipeCacheTree - Class in org.hkijena.jipipe.ui.cache
Displays a tree that contains all cached items of a state
JIPipeCacheTree(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheTree
 
JIPipeColumnGrouping - Enum in org.hkijena.jipipe.api.nodes
Strategies that determine how to detect the columns that should be used for matching
JIPipeCompartmentGraphDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor
Installs Drag and Drop features that create filesystem nodes
JIPipeCompartmentGraphDragAndDropBehavior() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
JIPipeCompartmentGraphUI - Class in org.hkijena.jipipe.ui.compartments
Graph editor UI for a project compartment graph
JIPipeCompartmentGraphUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI
 
JIPipeCompartmentOutput - Class in org.hkijena.jipipe.api.compartments.algorithms
A graph compartment output Transfers data 1:1 from input to output
JIPipeCompartmentOutput(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput
Creates a new instance.
JIPipeCompartmentOutput(JIPipeCompartmentOutput) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeCompartmentOutput
Creates a copy of the other algorithm
JIPipeCompartmentOutputData - Class in org.hkijena.jipipe.api.compartments.datatypes
Represents an JIPipeCompartmentOutput in the compartment graph.
JIPipeCompartmentOutputData() - Constructor for class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData
 
JIPipeCompartmentsExtension - Class in org.hkijena.jipipe.api.compartments
Extension that provides compartment management functionality
JIPipeCompartmentsExtension() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
JIPipeCompartmentUI - Class in org.hkijena.jipipe.ui.compartments
Editor for one project compartment graph Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content
JIPipeCompartmentUI(JIPipeProjectWorkbench, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentUI
Creates a new editor
JIPipeCompendiumUI<T> - Class in org.hkijena.jipipe.ui.compendium
A browsable list of help pages
JIPipeCompendiumUI(MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Creates a new instance
JIPipeComponentCellRenderer - Class in org.hkijena.jipipe.ui.components
 
JIPipeComponentCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeComponentCellRenderer
 
JIPipeConnectionDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor
Adds connection drag and drop behavior to a data slot
JIPipeConnectionDragAndDropBehavior(JIPipeDataSlotUI, JButton) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeConnectionDragAndDropBehavior
Adds connection drag and drop behavior to a data slot
JIPipeContextAction - Annotation Type in org.hkijena.jipipe.api.parameters
An additional action (usually UI action) that is attached to the ParameterPanel.
JIPipeCustomMenuRegistry - Class in org.hkijena.jipipe.ui.registries
Registry for menu extensions
JIPipeCustomMenuRegistry() - Constructor for class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
 
JIPipeCustomParameterCollection - Interface in org.hkijena.jipipe.api.parameters
If a class inherits from this interface, reflection-based parameter discovery is replaced by the getCustomParameters() method result.
JIPipeData - Interface in org.hkijena.jipipe.api.data
Base class for any JIPipe data wrapper class Any custom data should have following constructors: 1.
JIPipeDataBatch - Class in org.hkijena.jipipe.api.nodes
Wraps a set of input and output slots that belong together This can be used for convenience
JIPipeDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Creates a new interface
JIPipeDataBatch(JIPipeDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Creates a copy
JIPipeDataBatchAlgorithm - Interface in org.hkijena.jipipe.api.nodes
Methods shared across all JIPipeAlgorithm that generate data batches
JIPipeDataByMetadataExporter - Class in org.hkijena.jipipe.api.data
Class that exports data based on metadata
JIPipeDataByMetadataExporter() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
JIPipeDataByMetadataExporter(JIPipeDataByMetadataExporter) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
JIPipeDataConverter - Interface in org.hkijena.jipipe.api.data
Interface that converts between JIPipeData instances
JIPipeDataDisplayOperation - Interface in org.hkijena.jipipe.api.data
An operation that is executed on showing existing data located in memory/cache.
JIPipeDataImportOperation - Interface in org.hkijena.jipipe.api.data
An operation that is executed on showing existing data located in memory/cache The operations must be registered and will appear if the developer does not override the default importer row UI.
JIPipeDataInfo - Class in org.hkijena.jipipe.api.data
Compound type that contains all metadata of an JIPipeData type
JIPipeDataInfo.Deserializer - Class in org.hkijena.jipipe.api.data
Deserializes a info from a data type ID.
JIPipeDataInfo.KeyDeserializer - Class in org.hkijena.jipipe.api.data
Deserializer for a Map key
JIPipeDataInfo.Serializer - Class in org.hkijena.jipipe.api.data
Serializes a info as data type ID
JIPipeDataInfoCellRenderer - Class in org.hkijena.jipipe.ui.cache
Renders JIPipeData
JIPipeDataInfoCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataInfoCellRenderer
Create new instance
JIPipeDataInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components
JIPipeDataInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoListCellRenderer
Creates a new renderer
JIPipeDataInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references
Helper to allow easy serialization of JIPipeDataInfo references
JIPipeDataInfoRef(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
Initializes from data ID
JIPipeDataInfoRef(JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
JIPipeDataInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
New instance
JIPipeDataInfoRef(JIPipeDataInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
Creates a copy
JIPipeDataInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references
Deserializes the reference from a string
JIPipeDataInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references
Serializes the reference as ID
JIPipeDataInfoRefListCellRenderer - Class in org.hkijena.jipipe.ui.components
JIPipeDataInfoRefListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataInfoRefListCellRenderer
Creates a new renderer
JIPipeDataInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors
Parameter for JIPipeDataInfoRef
JIPipeDataInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI
 
JIPipeDataOperation - Interface in org.hkijena.jipipe.api.data
A user-interface operation on data
JIPipeDataParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.editors
Settings for JIPipeData parameters
JIPipeDataSlot - Class in org.hkijena.jipipe.api.data
A data slot holds an JIPipeData instance.
JIPipeDataSlot(JIPipeDataSlotInfo, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlot
Creates a new slot
JIPipeDataSlotBackupListCellRenderer - Class in org.hkijena.jipipe.ui.testbench
JIPipeDataSlotBackupListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeDataSlotBackupListCellRenderer
Creates a new renderer
JIPipeDataSlotCacheManagerUI - Class in org.hkijena.jipipe.ui.cache
Manages the cache for a specific data slot.
JIPipeDataSlotCacheManagerUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI
 
JIPipeDataSlotInfo - Class in org.hkijena.jipipe.api.data
Defines an JIPipeGraphNode data slot.
JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates an unnamed slot.
JIPipeDataSlotInfo(JIPipeInputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
JIPipeDataSlotInfo(JIPipeOutputSlot) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
JIPipeDataSlotInfo(JIPipeDataSlotInfo) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Copies the definition
JIPipeDataSlotInfo(Class<? extends JIPipeData>, JIPipeSlotType) - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates a new instance.
JIPipeDataSlotInfo.Deserializer - Class in org.hkijena.jipipe.api.data
Deserializes an JIPipeDataSlotInfo
JIPipeDataSlotInfo.Serializer - Class in org.hkijena.jipipe.api.data
Serializes an JIPipeDataSlotInfo
JIPipeDataSlotListCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings
Renders a JIPipeDataSlot
JIPipeDataSlotListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotListCellRenderer
Creates a new renderer
JIPipeDataSlotRowUI - Class in org.hkijena.jipipe.ui.cache
UI for a row
JIPipeDataSlotRowUI(JIPipeWorkbench, JIPipeDataSlot, int) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeDataSlotRowUI
Creates a new instance
JIPipeDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders additional String columns in a table
JIPipeDataSlotTableColumnHeaderRenderer(JIPipeExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDataSlotTableColumnHeaderRenderer
Creates a new instance
JIPipeDataSlotTreeCellRenderer - Class in org.hkijena.jipipe.ui.grapheditor.settings
Renders an JIPipeDataSlot in a JTree
JIPipeDataSlotTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeDataSlotTreeCellRenderer
Creates a new renderer
JIPipeDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor
UI around an JIPipeDataSlot
JIPipeDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Creates a new UI
JIPipeDataSource - Interface in org.hkijena.jipipe.api.data
An object that points to some source of JIPipeData
JIPipeDataTypeCompendiumUI - Class in org.hkijena.jipipe.ui.compendium
 
JIPipeDataTypeCompendiumUI() - Constructor for class org.hkijena.jipipe.ui.compendium.JIPipeDataTypeCompendiumUI
 
JIPipeDataTypePicker - Class in org.hkijena.jipipe.ui.components
Panel that allows to pick JIPipeDataInfo
JIPipeDataTypePicker(JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
JIPipeDataTypePicker.DataTypeDeselectedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is deselected
JIPipeDataTypePicker.DataTypeSelectedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is selected
JIPipeDataTypePicker.Mode - Enum in org.hkijena.jipipe.ui.components
The mode of the picker
JIPipeDataTypePicker.Renderer - Class in org.hkijena.jipipe.ui.components
Renders an item
JIPipeDataTypePicker.SelectedDataTypesChangedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is selected
JIPipeDatatypeRegistry - Class in org.hkijena.jipipe.api.registries
Contains known JIPipeData types, and associates them to their respective JIPipeDataSlot.
JIPipeDatatypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Creates a new instance
JIPipeDatatypeRegistry.DataConverterEdge - Class in org.hkijena.jipipe.api.registries
Edge between JIPipeDataInfo instances that indicate a conversion
JIPipeDefaultDocumentation - Class in org.hkijena.jipipe.api
Default implementation of JIPipeDocumentation
JIPipeDefaultDocumentation(String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeDefaultDocumentation
Creates a new instance
JIPipeDefaultJavaExtension - Class in org.hkijena.jipipe
Default implementation of JIPipeJavaExtension
JIPipeDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Creates a new instance
JIPipeDefaultMutableSlotConfiguration - Class in org.hkijena.jipipe.api.data
A schema for slots
JIPipeDefaultMutableSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Creates a new instance
JIPipeDefaultMutableSlotConfiguration.Builder - Class in org.hkijena.jipipe.api.data
A builder for creating a configuration
JIPipeDefaultNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries
Mutable implementation of JIPipeNodeRegistrationTask
JIPipeDefaultNodeRegistrationTask() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
Creates a new task
JIPipeDefaultParameterTypeInfo - Class in org.hkijena.jipipe.api.parameters
Standard implementation of JIPipeParameterTypeInfo
JIPipeDefaultParameterTypeInfo(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
JIPipeDefaultResultDataSlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis
Renders a JIPipeDataSlot row as table cell
JIPipeDefaultResultDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreview
Creates a new renderer
JIPipeDefaultResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis
Provides a standard result slot UI that can be also further extended.
JIPipeDefaultResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotRowUI
Creates a new UI
JIPipeDependency - Interface in org.hkijena.jipipe
Encapsulates a dependency such as an extension or JSON extension
JIPipeDependencyListCellRenderer - Class in org.hkijena.jipipe.ui.extensions
Renders an JIPipeDependency
JIPipeDependencyListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyListCellRenderer
Creates a new renderer
JIPipeDependencyUI - Class in org.hkijena.jipipe.ui.extensions
Displays an JIPipeDependency
JIPipeDependencyUI(JIPipeDependency) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipeDependencyUI
Creates a new UI
JIPipeDocumentation - Annotation Type in org.hkijena.jipipe.api
Used within JIPipe to annotate types and methods with documentation
JIPipeDummyParameterCollection - Class in org.hkijena.jipipe.api.parameters
An JIPipeParameterCollection that stores exactly one value (an object) This is used in conjunction with JIPipeManualParameterAccess
JIPipeDummyParameterCollection() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
JIPipeDynamicParameterCollection - Class in org.hkijena.jipipe.api.parameters
Holds a user-definable set of parameters
JIPipeDynamicParameterCollection(Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Creates a new instance with user modification enabled
JIPipeDynamicParameterCollection(boolean, Class<?>...) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Creates a new instance
JIPipeDynamicParameterCollection(JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Copies the parameters from the original
JIPipeDynamicParameterCollection(boolean, Set<JIPipeParameterTypeInfo>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Creates a new instance
JIPipeDynamicParameterCollection.ParameterAddingEvent - Class in org.hkijena.jipipe.api.parameters
 
JIPipeDynamicParameterCollection.UserParameterDefinition - Class in org.hkijena.jipipe.api.parameters
Parameter definition by a user
JIPipeEmptyNodeInfo - Class in org.hkijena.jipipe.api.nodes
An empty algorithm info.
JIPipeEmptyNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
JIPipeEmptyNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes
Serializes the empty algorithm info
JIPipeExportedCompartment - Class in org.hkijena.jipipe.api.compartments
JIPipeExportedCompartment() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Creates a new instance
JIPipeExportedCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Initializes the instance from a compartment
JIPipeExportedCompartment.Deserializer - Class in org.hkijena.jipipe.api.compartments
Deserializes the compartment
JIPipeExportedCompartment.Serializer - Class in org.hkijena.jipipe.api.compartments
Serializes the compartment
JIPipeExportedDataTable - Class in org.hkijena.jipipe.api.data
Contains all metadata exported from an JIPipeDataSlot
JIPipeExportedDataTable(JIPipeDataSlot, Path, List<Integer>) - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Initializes a new table from a slot
JIPipeExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
JIPipeExportedDataTable.Row - Class in org.hkijena.jipipe.api.data
A row in the table
JIPipeExpressionRegistry - Class in org.hkijena.jipipe.api.registries
Registry for table operations and other functional expressions
JIPipeExpressionRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
 
JIPipeExpressionRegistry.ColumnOperationEntry - Class in org.hkijena.jipipe.api.registries
A column operation entry
JIPipeExpressionRegistry.ExpressionFunctionEntry - Class in org.hkijena.jipipe.api.registries
 
JIPipeFixedThreadPool - Class in org.hkijena.jipipe.api
Contains a fixed thread pool.
JIPipeFixedThreadPool(int) - Constructor for class org.hkijena.jipipe.api.JIPipeFixedThreadPool
Initializes a pool with the specified amount of threads.
JIPipeGraph - Class in org.hkijena.jipipe.api.nodes
Manages multiple JIPipeGraphNode instances as graph
JIPipeGraph() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph
Creates a new node type graph
JIPipeGraph(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph
Creates a deep copy of the other algorithm graph
JIPipeGraph.Deserializer - Class in org.hkijena.jipipe.api.nodes
Deserializes an JIPipeGraph
JIPipeGraph.GraphChangedEvent - Class in org.hkijena.jipipe.api.nodes
Event is triggered when algorithm graph is changed
JIPipeGraph.NodeConnectedEvent - Class in org.hkijena.jipipe.api.nodes
Generated when a connection was made in JIPipeGraph
JIPipeGraph.NodeDisconnectedEvent - Class in org.hkijena.jipipe.api.nodes
Generated when slots are disconnected
JIPipeGraph.NodeSlotsChangedEvent - Class in org.hkijena.jipipe.api.nodes
Triggered when an algorithm's slots change
JIPipeGraph.Serializer - Class in org.hkijena.jipipe.api.nodes
Serializes an JIPipeGraph
JIPipeGraphCanvasUI - Class in org.hkijena.jipipe.ui.grapheditor
UI that displays an JIPipeGraph
JIPipeGraphCanvasUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Creates a new UI
JIPipeGraphCanvasUI.AlgorithmSelectedEvent - Class in org.hkijena.jipipe.ui.grapheditor
Generated when an algorithm is selected
JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent - Class in org.hkijena.jipipe.ui.grapheditor
Triggered when An JIPipeGraphCanvasUI selection was changed
JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.grapheditor
An action that is requested by an JIPipeNodeUI and passed down to a JIPipeGraphEditorUI
JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent - Class in org.hkijena.jipipe.ui.grapheditor
Triggered when an JIPipeNodeUI requests a default action (double click)
JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent - Class in org.hkijena.jipipe.ui.grapheditor
Triggered when a graph canvas was updated
JIPipeGraphCompartmentDragAndDropBehavior - Class in org.hkijena.jipipe.ui.grapheditor
Installs Drag and Drop features that create filesystem nodes
JIPipeGraphCompartmentDragAndDropBehavior() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
JIPipeGraphCompartmentUI - Class in org.hkijena.jipipe.ui.grapheditor
Editor for a project graph compartment
JIPipeGraphCompartmentUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
Creates a project graph compartment editor
JIPipeGraphDragAndDropBehavior - Interface in org.hkijena.jipipe.ui.grapheditor
Provides Drag and Drop behavior for JIPipeGraphCanvasUI
JIPipeGraphEdge - Class in org.hkijena.jipipe.api.nodes
A custom graph edge
JIPipeGraphEdge() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
Initializes a new graph edge that is not user-disconnectable
JIPipeGraphEdge(boolean) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
Initializes a new graph edge
JIPipeGraphEditorMinimap - Class in org.hkijena.jipipe.ui.grapheditor
Renders a overview of the graph
JIPipeGraphEditorMinimap(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
JIPipeGraphEditorUI - Class in org.hkijena.jipipe.ui.grapheditor
A panel around JIPipeGraphCanvasUI that comes with scrolling/panning, properties panel, and a menu bar
JIPipeGraphEditorUI(JIPipeWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
JIPipeGraphEditorUI.NavigationRenderer - Class in org.hkijena.jipipe.ui.grapheditor
Renders items in the navigator
JIPipeGraphHistory - Class in org.hkijena.jipipe.api.history
Manages a Undo-history
JIPipeGraphHistory() - Constructor for class org.hkijena.jipipe.api.history.JIPipeGraphHistory
 
JIPipeGraphHistory.GraphHistoryChangedEvent - Class in org.hkijena.jipipe.api.history
Triggered when an JIPipeGraphHistory was changed
JIPipeGraphNode - Class in org.hkijena.jipipe.api.nodes
An algorithm is is a set of input and output data slots, and a run() function It is part of the JIPipeGraph.
JIPipeGraphNode(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Initializes this algorithm with a custom provided slot configuration and trait configuration
JIPipeGraphNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Initializes a new node type instance
JIPipeGraphNode(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Copies the input algorithm's properties into this algorithm
JIPipeGraphNode.Serializer - Class in org.hkijena.jipipe.api.nodes
Serializes an JIPipeGraphNode instance
JIPipeGraphRunner - Class in org.hkijena.jipipe.api
Executes an JIPipeGraph.
JIPipeGraphRunner(JIPipeGraph) - Constructor for class org.hkijena.jipipe.api.JIPipeGraphRunner
Creates a new instance
JIPipeGraphType - Enum in org.hkijena.jipipe.api
Attached to JIPipeGraph instances to indicate which kind of graph they are
JIPipeGraphViewMode - Enum in org.hkijena.jipipe.ui.grapheditor
The direction how a canvas renders the nodes
JIPipeGUICommand - Class in org.hkijena.jipipe
Command that runs the GUI
JIPipeGUICommand() - Constructor for class org.hkijena.jipipe.JIPipeGUICommand
 
JIPipeHeavyData - Annotation Type in org.hkijena.jipipe.api
Annotates a JIPipeData type as being "heavy" (large file size).
JIPipeHidden - Annotation Type in org.hkijena.jipipe.api
Marks a class as hidden
JIPipeHorizontalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor
Slot UI with horizontal direction
JIPipeHorizontalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI
Creates a new UI
JIPipeHorizontalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor
An algorithm UI for horizontal display
JIPipeHorizontalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
Creates a new UI
JIPipeIconPickerDialog - Class in org.hkijena.jipipe.ui.components
Dialog that picks an icon
JIPipeIconPickerDialog(Window, String, Set<String>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
JIPipeImageJAdapterRegistry - Class in org.hkijena.jipipe.api.registries
Registers all known adapters between ImageJ and JIPipe data types
JIPipeImageJAdapterRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
 
JIPipeImageJPluginManager - Class in org.hkijena.jipipe.ui.ijupdater
JIPipe's own implementation of the ImageJ updater ImageJUpdater
JIPipeImageJPluginManager(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
JIPipeImageJPluginManager(JIPipeWorkbench, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
JIPipeImageJUpdateSiteDependency - Class in org.hkijena.jipipe
A dependency that points to an ImageJ update site.
JIPipeImageJUpdateSiteDependency() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
JIPipeImageJUpdateSiteDependency(String, String) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
JIPipeImageJUpdateSiteDependency(UpdateSite) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
Initializes the dependency from an update site
JIPipeImageJUpdateSiteDependency(JIPipeImageJUpdateSiteDependency) - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
JIPipeImageJUpdateSiteDependency.List - Class in org.hkijena.jipipe
the List class
JIPipeInfoUI - Class in org.hkijena.jipipe.ui
UI that shows some introduction
JIPipeInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeInfoUI
Creates a new instance
JIPipeInheritanceConversionListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders inheritance conversion entries
JIPipeInheritanceConversionListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeInheritanceConversionListCellRenderer
Creates a new renderer
JIPipeInputSlot - Annotation Type in org.hkijena.jipipe.api.nodes
Annotates an JIPipeGraphNode with an input slot.
JIPipeInputSlots - Annotation Type in org.hkijena.jipipe.api.nodes
Required to allow multiple JIPipeInputSlot
JIPipeIntegrateTableColumnsDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer
UI for integrating table columns
JIPipeIntegrateTableColumnsDialogUI(ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeIntegrateTableColumnsDialogUI
 
JIPipeIOSlotConfiguration - Class in org.hkijena.jipipe.api.nodes
Slot configuration that always ensures 1:1 relation between input and output slots
JIPipeIOSlotConfiguration() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
Creates a new instance
JIPipeIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes
An JIPipeAlgorithm that iterates through each data row.
JIPipeIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
Creates a new instance
JIPipeIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
Creates a new instance
JIPipeIteratingAlgorithm(JIPipeIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
Copies the algorithm
JIPipeIteratingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes
Groups data batch generation settings
JIPipeJavaExtension - Interface in org.hkijena.jipipe
A Java extension
JIPipeJavaNodeInfo - Class in org.hkijena.jipipe.api.nodes
JIPipeNodeInfo for an algorithm that is defined in Java code All necessary properties are extracted from class attributes
JIPipeJavaNodeInfo(String, Class<? extends JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
Creates a new node type info
JIPipeJavaNodeInfo.Serializer - Class in org.hkijena.jipipe.api.nodes
Serializes the info
JIPipeJavaNodeRegistrationTask - Class in org.hkijena.jipipe.api.registries
Registers a Java algorithm
JIPipeJavaNodeRegistrationTask(String, Class<? extends JIPipeGraphNode>, JIPipeDependency, URL) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask
Creates a new registration task
JIPipeJsonAlgorithmExporterMultiSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Panel shown when multiple algorithms are selected
JIPipeJsonAlgorithmExporterMultiSelectionPanelUI(JIPipeWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterMultiSelectionPanelUI
 
JIPipeJsonAlgorithmExporterSingleSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Shown when one algorithm is selected
JIPipeJsonAlgorithmExporterSingleSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonAlgorithmExporterSingleSelectionPanelUI
 
JIPipeJsonExporter - Class in org.hkijena.jipipe.ui.extensionbuilder
Exports a JsonNodeInfo
JIPipeJsonExporter(JIPipeProjectWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter
Creates a new UI
JIPipeJsonExtension - Class in org.hkijena.jipipe
A JSON-serializable extension
JIPipeJsonExtension() - Constructor for class org.hkijena.jipipe.JIPipeJsonExtension
Creates a new instance
JIPipeJsonExtension.Deserializer - Class in org.hkijena.jipipe
Deserializer for the JIPipeJsonExtension.
JIPipeJsonExtensionContentListUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Lists the content of an JIPipeJsonExtension
JIPipeJsonExtensionContentListUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
Creates new instance
JIPipeJsonExtensionGraphUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Graph editor UI used within an JIPipeJsonExtension
JIPipeJsonExtensionGraphUI(JIPipeJsonExtensionWorkbench, JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI
Creates a new instance
JIPipeJsonExtensionInfoUI - Class in org.hkijena.jipipe.ui
UI that shows some introduction
JIPipeJsonExtensionInfoUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI
Creates a new instance
JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Panel shown when multiple algorithms are selected
JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI(JIPipeJsonExtensionWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionMultiAlgorithmSelectionPanelUI
 
JIPipeJsonExtensionProjectValidation - Class in org.hkijena.jipipe.ui.extensionbuilder
Supplies additional validation only for projects
JIPipeJsonExtensionProjectValidation(JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation
Creates a new instance
JIPipeJsonExtensionSettingsUI - Class in org.hkijena.jipipe.ui.settings
Panel containing algorithm settings when algorithms are edited in a JIPipeJsonExtension
JIPipeJsonExtensionSettingsUI(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeJsonExtensionSettingsUI
 
JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.extensionbuilder
Shown when one algorithm is selected
JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionSingleAlgorithmSelectionPanelUI
 
JIPipeJsonExtensionWindow - Class in org.hkijena.jipipe.ui
Window that displays JIPipeJsonExtension UIs
JIPipeJsonExtensionWindow(Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Creates a new instance
JIPipeJsonExtensionWorkbench - Class in org.hkijena.jipipe.ui
JIPipeJsonExtensionWorkbench(JIPipeJsonExtensionWindow, Context, JIPipeJsonExtension, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
 
JIPipeJsonExtensionWorkbenchPanel - Class in org.hkijena.jipipe.ui
UI panel that contains references to an JIPipeJsonExtension UI
JIPipeJsonExtensionWorkbenchPanel(JIPipeJsonExtensionWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbenchPanel
 
JIPipeLauncher - Class in org.hkijena.jipipe
 
JIPipeLauncher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher
 
JIPipeLauncher.WindowWatcher - Class in org.hkijena.jipipe
 
JIPipeLogViewer - Class in org.hkijena.jipipe.ui.running
 
JIPipeLogViewer(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer
 
JIPipeLogViewer.LogEntry - Class in org.hkijena.jipipe.ui.running
 
JIPipeLogViewer.LogEntryRenderer - Class in org.hkijena.jipipe.ui.running
 
JIPipeManualParameterAccess - Class in org.hkijena.jipipe.api.parameters
A custom parameter access
JIPipeManualParameterAccess.Builder - Class in org.hkijena.jipipe.api.parameters
JIPipeMergedDataSlotTable - Class in org.hkijena.jipipe.api.data
Merges multiple JIPipeDataSlot Please not the previews are initialized with deferred rendering.
JIPipeMergedDataSlotTable(JTable, boolean) - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
JIPipeMergedDataSlotTableColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders the column header in merged JIPipeExportedDataTable instances
JIPipeMergedDataSlotTableColumnHeaderRenderer(JIPipeMergedExportedDataTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedDataSlotTableColumnHeaderRenderer
 
JIPipeMergedExportedDataTable - Class in org.hkijena.jipipe.api.data
Merges multiple JIPipeExportedDataTable
JIPipeMergedExportedDataTable() - Constructor for class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
JIPipeMergedResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis
Displays the result of multiple JIPipeDataSlot
JIPipeMergedResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, List<JIPipeDataSlot>) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeMergedResultDataSlotTableUI
 
JIPipeMergeTablesDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer
UI that merges tables
JIPipeMergeTablesDialogUI(JIPipeTableEditor) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeMergeTablesDialogUI
Creates new instance
JIPipeMergingAlgorithm - Class in org.hkijena.jipipe.api.nodes
An JIPipeAlgorithm that applies a similar algorithm to JIPipeIteratingAlgorithm, but does create JIPipeMergingDataBatch instead.
JIPipeMergingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
Creates a new instance
JIPipeMergingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
Creates a new instance
JIPipeMergingAlgorithm(JIPipeMergingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
Copies the algorithm
JIPipeMergingAlgorithm.DataBatchGenerationSettings - Class in org.hkijena.jipipe.api.nodes
 
JIPipeMergingDataBatch - Class in org.hkijena.jipipe.api.nodes
Wraps a set of input and output slots that belong together.
JIPipeMergingDataBatch(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Creates a new interface
JIPipeMergingDataBatch(JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Creates a copy
JIPipeMergingDataBatchBuilder - Class in org.hkijena.jipipe.api.nodes
Class that generates a JIPipeMergingDataBatch or JIPipeDataBatch instance.
JIPipeMergingDataBatchBuilder() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
JIPipeMetadata - Class in org.hkijena.jipipe.api
JSON-serializable project metadata
JIPipeMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata
Creates new empty instance
JIPipeMetadata(JIPipeMetadata) - Constructor for class org.hkijena.jipipe.api.JIPipeMetadata
Copies metadata
JIPipeMultiAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings
UI when multiple algorithms are selected
JIPipeMultiAlgorithmSelectionPanelUI(JIPipeProjectWorkbench, JIPipeGraphCanvasUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeMultiAlgorithmSelectionPanelUI
 
JIPipeMultiCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments
UI when multiple JIPipeProjectCompartment instances are selected
JIPipeMultiCompartmentSelectionPanelUI(JIPipeProjectWorkbench, Set<JIPipeProjectCompartment>, JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeMultiCompartmentSelectionPanelUI
 
JIPipeMutableDependency - Class in org.hkijena.jipipe
A JSON-serializable JIPipeDependency.
JIPipeMutableDependency() - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency
Creates a new instance
JIPipeMutableDependency(JIPipeDependency) - Constructor for class org.hkijena.jipipe.JIPipeMutableDependency
Copies the dependency
JIPipeMutableNodeInfo - Class in org.hkijena.jipipe.api.nodes
Instantiates JIPipeGraphNode instances
JIPipeMutableNodeInfo() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
JIPipeMutableParameterAccess - Class in org.hkijena.jipipe.api.parameters
A mutable implementation of JIPipeParameterAccess
JIPipeMutableParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Creates a new instance
JIPipeMutableParameterAccess(JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Creates a new independent parameter from the provided access
JIPipeMutableParameterAccess(JIPipeParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Creates a new instance
JIPipeMutableParameterAccess(JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Copies the parameter access
JIPipeMutableParameterAccess.Deserializer - Class in org.hkijena.jipipe.api.parameters
JIPipeMutableSlotConfiguration - Interface in org.hkijena.jipipe.api.data
A slot configuration that can be changed.
JIPipeNamedParameterCollection - Interface in org.hkijena.jipipe.api.parameters
An JIPipeParameterCollection that comes with a predefined name
JIPipeNodeGroupUI - Class in org.hkijena.jipipe.ui.grouping
Editor for a NodeGroup Contains a JIPipeGraphCompartmentUI instance that allows editing the compartment's content
JIPipeNodeGroupUI(JIPipeWorkbench, NodeGroup) - Constructor for class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI
Creates a new editor
JIPipeNodeInfo - Interface in org.hkijena.jipipe.api.nodes
Describes an JIPipeGraphNode
JIPipeNodeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renderer for JIPipeNodeInfo
JIPipeNodeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoListCellRenderer
Creates a new renderer
JIPipeNodeInfoPicker - Class in org.hkijena.jipipe.ui.components
Panel that allows to pick JIPipeNodeInfo
JIPipeNodeInfoPicker(JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
JIPipeNodeInfoPicker.AlgorithmDeselectedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is deselected
JIPipeNodeInfoPicker.Mode - Enum in org.hkijena.jipipe.ui.components
The mode of the picker
JIPipeNodeInfoPicker.NodeSelectedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is selected
JIPipeNodeInfoPicker.Renderer - Class in org.hkijena.jipipe.ui.components
Renders the entries
JIPipeNodeInfoPicker.SelectedTraitsChangedEvent - Class in org.hkijena.jipipe.ui.components
Generated when a trait is selected
JIPipeNodeInfoRef - Class in org.hkijena.jipipe.extensions.parameters.references
A parameter that holds a reference to an JIPipeNodeInfo
JIPipeNodeInfoRef(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
 
JIPipeNodeInfoRef(JIPipeNodeInfoRef) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
Creates a copy
JIPipeNodeInfoRef() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
New instance
JIPipeNodeInfoRef.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.references
Deserializes the reference from a string
JIPipeNodeInfoRef.Serializer - Class in org.hkijena.jipipe.extensions.parameters.references
Serializes the reference as ID
JIPipeNodeInfoRefParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors
Parameter for JIPipeNodeInfoRef
JIPipeNodeInfoRefParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI
 
JIPipeNodeRegistrationTask - Interface in org.hkijena.jipipe.api.registries
A task for algorithm registration that can handle algorithm dependencies
JIPipeNodeRegistry - Class in org.hkijena.jipipe.api.registries
Manages known algorithms and their annotations
JIPipeNodeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Creates a new registry
JIPipeNodeTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders JIPipeGraphNode instances in a table cell
JIPipeNodeTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeNodeTableCellRenderer
Creates a new renderer
JIPipeNodeTypeCategory - Interface in org.hkijena.jipipe.api.nodes
Describes a node category
JIPipeNodeUI - Class in org.hkijena.jipipe.ui.grapheditor
UI around an JIPipeGraphNode instance
JIPipeNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode, JIPipeGraphViewMode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Creates a new UI
JIPipeNodeUI.AlgorithmEvent - Class in org.hkijena.jipipe.ui.grapheditor
An event around JIPipeNodeUI
JIPipeOpenTableFromImageJDialogUI - Class in org.hkijena.jipipe.ui.tableanalyzer
UI that merges tables
JIPipeOpenTableFromImageJDialogUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeOpenTableFromImageJDialogUI
Creates new instance
JIPipeOrganization - Annotation Type in org.hkijena.jipipe.api
Annotations used for organizing elements
JIPipeOutputData - Class in org.hkijena.jipipe.extensions.utils.datatypes
 
JIPipeOutputData(Path) - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData
Initializes file data from a file
JIPipeOutputData(String) - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData
 
JIPipeOutputSlot - Annotation Type in org.hkijena.jipipe.api.nodes
Annotates an JIPipeGraphNode with an output slot.
JIPipeOutputSlots - Annotation Type in org.hkijena.jipipe.api.nodes
Required to allow multiple JIPipeOutputSlot
JIPipeParallelizedAlgorithm - Interface in org.hkijena.jipipe.api.nodes
Algorithm that supports parallelization
JIPipeParameter - Annotation Type in org.hkijena.jipipe.api.parameters
Annotates a getter or setter function as parameter.
JIPipeParameterAccess - Interface in org.hkijena.jipipe.api.parameters
Interface around accessing a parameter
JIPipeParameterCollection - Interface in org.hkijena.jipipe.api.parameters
Interfaced for a parameterized object
JIPipeParameterCollection.ParameterChangedEvent - Class in org.hkijena.jipipe.api.parameters
Triggered when a parameter holder's parameters are changed
JIPipeParameterCollection.ParameterStructureChangedEvent - Class in org.hkijena.jipipe.api.parameters
Triggered by an JIPipeParameterCollection if the list of available parameters is changed
JIPipeParameterCollectionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.util
 
JIPipeParameterCollectionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI
Creates new instance
JIPipeParameterCollectionVisibilities - Class in org.hkijena.jipipe.api.parameters
Used as parameter to control the visibility of an existing parameter collection
JIPipeParameterCollectionVisibilities() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Creates new instance
JIPipeParameterCollectionVisibilities(JIPipeParameterCollectionVisibilities) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Creates a copy
JIPipeParameterCollectionVisibilitiesParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.editors
JIPipeParameterCollectionVisibilitiesParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI
Creates new instance
JIPipeParameterEditorUI - Class in org.hkijena.jipipe.ui.parameters
A UI for a parameter type
JIPipeParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Creates new instance
JIPipeParameterGeneratorUI - Class in org.hkijena.jipipe.ui.parameters
UI that generates a set of parameter values
JIPipeParameterGeneratorUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI
Creates a new instance
JIPipeParameterPersistence - Enum in org.hkijena.jipipe.api.parameters
Determines how a parameter is serialized
JIPipeParameterSlotAlgorithm - Class in org.hkijena.jipipe.api.nodes
An JIPipeAlgorithm that has an optional slot that allows to supply parameter data sets.
JIPipeParameterSlotAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
JIPipeParameterSlotAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
JIPipeParameterSlotAlgorithm(JIPipeParameterSlotAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings - Class in org.hkijena.jipipe.api.nodes
Groups parameter slot settings
JIPipeParameterTree - Class in org.hkijena.jipipe.api.parameters
An JIPipeParameterCollection that contains all the parameters of one or multiple JIPipeParameterCollection instances in a traversed form.
JIPipeParameterTree() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
JIPipeParameterTree(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Creates a new instance with a predefined root parameter
JIPipeParameterTree(JIPipeParameterCollection, int) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Creates a new instance with a predefined root parameter
JIPipeParameterTree.ContextAction - Class in org.hkijena.jipipe.api.parameters
 
JIPipeParameterTree.Node - Class in org.hkijena.jipipe.api.parameters
A node
JIPipeParameterTypeInfo - Interface in org.hkijena.jipipe.api.parameters
A type that describes a JIPipe parameter type
JIPipeParameterTypeInfoListCellRenderer - Class in org.hkijena.jipipe.ui.components
 
JIPipeParameterTypeInfoListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeParameterTypeInfoListCellRenderer
 
JIPipeParameterTypeRegistry - Class in org.hkijena.jipipe.api.registries
Registry for all known parameter types
JIPipeParameterTypeRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
 
JIPipeParameterVisibility - Enum in org.hkijena.jipipe.api.parameters
Defines the visibility of a parameter
JIPipePlotAvailableDataManagerUI - Class in org.hkijena.jipipe.ui.plotbuilder
Manages available data sets of a plot builder
JIPipePlotAvailableDataManagerUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI
 
JIPipePlotBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder
User interface for displaying and creating plots
JIPipePlotBuilderUI(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
JIPipePlotSeriesBuilder - Class in org.hkijena.jipipe.ui.plotbuilder
Constructs a series from a set of columns
JIPipePlotSeriesBuilder(JIPipePlotBuilderUI, JIPipeDataInfo) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Creates a new instance
JIPipePlotSeriesBuilderUI - Class in org.hkijena.jipipe.ui.plotbuilder
JIPipePlotSeriesBuilderUI(JIPipeWorkbench, JIPipePlotSeriesBuilder) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilderUI
 
JIPipePlotSeriesListEditorUI - Class in org.hkijena.jipipe.ui.plotbuilder
Manages the list of series in a JIPipePlotBuilderUI
JIPipePlotSeriesListEditorUI(JIPipeWorkbench, JIPipePlotBuilderUI) - Constructor for class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI
Creates a new instance
JIPipePluginManagerUIPanel - Class in org.hkijena.jipipe.ui.extensions
UI that lists all plugins
JIPipePluginManagerUIPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel
 
JIPipePluginValidityCheckerButton - Class in org.hkijena.jipipe.ui.extensions
Button that checks the plugin validity and shows the report if clicked
JIPipePluginValidityCheckerButton() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton
Creates new instance
JIPipePluginValidityCheckerPanel - Class in org.hkijena.jipipe.ui.extensions
Panel that checks plugin validity
JIPipePluginValidityCheckerPanel() - Constructor for class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel
Creates new instance
JIPipePrepackagedDefaultJavaExtension - Class in org.hkijena.jipipe.extensions
JIPipeDefaultJavaExtension for internal usage
JIPipePrepackagedDefaultJavaExtension() - Constructor for class org.hkijena.jipipe.extensions.JIPipePrepackagedDefaultJavaExtension
 
JIPipeProgressInfo - Class in org.hkijena.jipipe.api
This object is available inside a JIPipeRunnable and contains methods to report progress, logs, and request cancellation.
JIPipeProgressInfo() - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo
 
JIPipeProgressInfo(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo
 
JIPipeProgressInfo.StatusUpdatedEvent - Class in org.hkijena.jipipe.api
 
JIPipeProject - Class in org.hkijena.jipipe.api
A JIPipe project.
JIPipeProject() - Constructor for class org.hkijena.jipipe.api.JIPipeProject
A JIPipe project
JIPipeProject.CompartmentAddedEvent - Class in org.hkijena.jipipe.api
Triggered when a sample is added to an JIPipeProject
JIPipeProject.CompartmentRemovedEvent - Class in org.hkijena.jipipe.api
Triggered when a sample is removed from an JIPipeProject
JIPipeProject.CompartmentRenamedEvent - Class in org.hkijena.jipipe.api
Triggered when a sample in an JIPipeProject is renamed
JIPipeProject.Deserializer - Class in org.hkijena.jipipe.api
Deserializes a project
JIPipeProject.Serializer - Class in org.hkijena.jipipe.api
Serializes a project
JIPipeProject.WorkDirectoryChangedEvent - Class in org.hkijena.jipipe.api
Triggered when the work directory of a project or algorithm was changed
JIPipeProjectCache - Class in org.hkijena.jipipe.api
A structure that manages cached data
JIPipeProjectCache(JIPipeProject) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache
Creates a new instance
JIPipeProjectCache.ModifiedEvent - Class in org.hkijena.jipipe.api
Event that is triggered when the cache was modified (something stored or removed)
JIPipeProjectCacheQuery - Class in org.hkijena.jipipe.api
A query that allows to access a JIPipeProjectCache.
JIPipeProjectCacheQuery(JIPipeProject) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
 
JIPipeProjectCacheState - Class in org.hkijena.jipipe.api
Encapsulates a state
JIPipeProjectCacheState(JIPipeGraphNode, Set<JIPipeProjectCacheState>, LocalDateTime) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCacheState
Creates a new instance
JIPipeProjectCompartment - Class in org.hkijena.jipipe.api.compartments.algorithms
A project compartment.
JIPipeProjectCompartment(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
Creates new instance
JIPipeProjectCompartment(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
Copies the compartment
JIPipeProjectCompartmentTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders an JIPipeProjectCompartment cell
JIPipeProjectCompartmentTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeProjectCompartmentTableCellRenderer
Creates new instance
JIPipeProjectInfoParameters - Class in org.hkijena.jipipe.ui.settings
Additional metadata that provides parameter references for JIPipeProjectInfoUI
JIPipeProjectInfoParameters() - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
JIPipeProjectInfoUI - Class in org.hkijena.jipipe.ui
UI that gives an overview of a pipeline (shows parameters, etc.)
JIPipeProjectInfoUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectInfoUI
Creates a new instance
JIPipeProjectMetadata - Class in org.hkijena.jipipe.api
Metadata for a JIPipeProject
JIPipeProjectMetadata() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectMetadata
 
JIPipeProjectOutputTreePanel - Class in org.hkijena.jipipe.ui.components
Displays a tree where the user can select data slots
JIPipeProjectOutputTreePanel(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeProjectOutputTreePanel
 
JIPipeProjectParameterDefinition - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
JIPipeProjectParameterDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition
 
JIPipeProjectParameterDefinition(ParametersDataTableDefinition) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.JIPipeProjectParameterDefinition
 
JIPipeProjectSettingsUI - Class in org.hkijena.jipipe.ui.settings
UI around the metadata of an JIPipeProject
JIPipeProjectSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.settings.JIPipeProjectSettingsUI
 
JIPipeProjectTabMetadata - Class in org.hkijena.jipipe.ui.project
Metadata that allows the restoration of tabs
JIPipeProjectTabMetadata() - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
JIPipeProjectTabMetadata(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
JIPipeProjectTemplate - Class in org.hkijena.jipipe.api
A reference to a template project
JIPipeProjectTemplate() - Constructor for class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
JIPipeProjectWindow - Class in org.hkijena.jipipe.ui
Window that holds an JIPipeProjectWorkbench instance
JIPipeProjectWindow(Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
JIPipeProjectWorkbench - Class in org.hkijena.jipipe.ui
UI around an JIPipeProject
JIPipeProjectWorkbench(JIPipeProjectWindow, Context, JIPipeProject, boolean, boolean) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
JIPipeProjectWorkbenchPanel - Class in org.hkijena.jipipe.ui
Panel that holds a reference to JIPipeProjectWorkbench
JIPipeProjectWorkbenchPanel(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeProjectWorkbenchPanel
 
JIPipeReflectionParameterAccess - Class in org.hkijena.jipipe.api.parameters
JIPipeParameterAccess generated from reflection
JIPipeReflectionParameterAccess() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
JIPipeRegistry - Interface in org.hkijena.jipipe
Contains all JIPipe resources
JIPipeRegistryIssues - Class in org.hkijena.jipipe
Class that describes issues with the current registration process
JIPipeRegistryIssues() - Constructor for class org.hkijena.jipipe.JIPipeRegistryIssues
 
JIPipeResultAlgorithmTree - Class in org.hkijena.jipipe.ui.resultanalysis
Displays a tree where the user can select data slots
JIPipeResultAlgorithmTree(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultAlgorithmTree
 
JIPipeResultCopyFilesByMetadataExporterRun - Class in org.hkijena.jipipe.ui.resultanalysis
 
JIPipeResultCopyFilesByMetadataExporterRun(JIPipeWorkbench, List<JIPipeDataSlot>, boolean) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
JIPipeResultDataSlotPreview - Class in org.hkijena.jipipe.ui.resultanalysis
Renders a JIPipeDataSlot row as table cell.
JIPipeResultDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Creates a new renderer
JIPipeResultDataSlotRowUI - Class in org.hkijena.jipipe.ui.resultanalysis
A UI that contains various actions for importing/processing output data Please note that the data is not present in the data slot anymore at this point, but instead stored in output files.
JIPipeResultDataSlotRowUI(JIPipeProjectWorkbench, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotRowUI
 
JIPipeResultDataSlotTableUI - Class in org.hkijena.jipipe.ui.resultanalysis
UI that displays the JIPipeExportedDataTable of an JIPipeDataSlot
JIPipeResultDataSlotTableUI(JIPipeProjectWorkbench, JIPipeRun, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotTableUI
 
JIPipeResultSlotDataSource - Class in org.hkijena.jipipe.api.data
Data from a slot inside a result folder
JIPipeResultSlotDataSource(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path) - Constructor for class org.hkijena.jipipe.api.data.JIPipeResultSlotDataSource
 
JIPipeResultTreeCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders the tree in JIPipeResultAlgorithmTree
JIPipeResultTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultTreeCellRenderer
Creates new renderer
JIPipeResultUI - Class in org.hkijena.jipipe.ui.resultanalysis
UI around an JIPipeRun result
JIPipeResultUI(JIPipeProjectWorkbench, JIPipeRun) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultUI
 
JIPipeRowDataMergedTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
JIPipeRowDataMergedTableCellRenderer(JIPipeProjectWorkbench, JIPipeMergedExportedDataTable, JScrollPane, JTable) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer
 
JIPipeRowDataTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
Renders row data of an JIPipeExportedDataTable
JIPipeRowDataTableCellRenderer(JIPipeProjectWorkbench, JIPipeDataSlot, JTable, JScrollPane) - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer
 
JIPipeRowIndexTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
JIPipeRowIndexTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowIndexTableCellRenderer
Creates new renderer
JIPipeRun - Class in org.hkijena.jipipe.api
Runnable instance of an JIPipeProject
JIPipeRun(JIPipeProject, JIPipeRunSettings) - Constructor for class org.hkijena.jipipe.api.JIPipeRun
 
JIPipeRunAlgorithmCommand - Class in org.hkijena.jipipe
Runs a JIPipe algorithm on a single data set.
JIPipeRunAlgorithmCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunAlgorithmCommand
 
JIPipeRunCommand - Class in org.hkijena.jipipe
Command that runs a JIPipe project without GUI
JIPipeRunCommand() - Constructor for class org.hkijena.jipipe.JIPipeRunCommand
 
JIPipeRunExecuterUI - Class in org.hkijena.jipipe.installer.linux.ui.utils
UI that executes an JIPipeRunnable
JIPipeRunExecuterUI(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
 
JIPipeRunExecuterUI - Class in org.hkijena.jipipe.ui.running
UI that executes an JIPipeRunnable
JIPipeRunExecuterUI(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
 
JIPipeRunnable - Interface in org.hkijena.jipipe.api
Runnable that can be scheduled, canceled, and reports progress
JIPipeRunnable - Interface in org.hkijena.jipipe.installer.linux.api
Runnable that can be scheduled, canceled, and reports progress
JIPipeRunnerQueue - Class in org.hkijena.jipipe.installer.linux.ui.utils
Queue for JIPipeRunnable
JIPipeRunnerQueue - Class in org.hkijena.jipipe.ui.running
Queue for JIPipeRunnable
JIPipeRunnerQueueUI - Class in org.hkijena.jipipe.ui.running
UI that monitors the queue
JIPipeRunnerQueueUI() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Creates new instance
JIPipeRunnerStatus - Class in org.hkijena.jipipe.installer.linux.api
Status of a runner
JIPipeRunnerStatus(int, int, String) - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerStatus
 
JIPipeRunnerSubStatus - Class in org.hkijena.jipipe.installer.linux.api
A nestable
JIPipeRunnerSubStatus() - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus
 
JIPipeRunnerSubStatus(String...) - Constructor for class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus
 
JIPipeRunQueuePanelUI - Class in org.hkijena.jipipe.ui.running
UI that executes an JIPipeRunnable
JIPipeRunQueuePanelUI() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
 
JIPipeRunSettings - Class in org.hkijena.jipipe.api
Settings for an JIPipeRun
JIPipeRunSettings() - Constructor for class org.hkijena.jipipe.api.JIPipeRunSettings
 
JIPipeRunSettingsUI - Class in org.hkijena.jipipe.ui.running
Settings UI for JIPipeRunSettings
JIPipeRunSettingsUI(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI
 
JIPipeRunWorker - Class in org.hkijena.jipipe.installer.linux.ui.utils
A worker
JIPipeRunWorker(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
JIPipeRunWorker - Class in org.hkijena.jipipe.ui.running
A worker
JIPipeRunWorker(JIPipeRunnable) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
JIPipeSettingsRegistry - Class in org.hkijena.jipipe.api.registries
Registry for settings.
JIPipeSettingsRegistry() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
 
JIPipeSettingsRegistry.Sheet - Class in org.hkijena.jipipe.api.registries
A settings sheet
JIPipeSimpleIteratingAlgorithm - Class in org.hkijena.jipipe.api.nodes
An JIPipeAlgorithm that iterates through each data row.
JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo, JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
Creates a new instance
JIPipeSimpleIteratingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
Creates a new instance
JIPipeSimpleIteratingAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
Copies the algorithm
JIPipeSingleAlgorithmSelectionPanelUI - Class in org.hkijena.jipipe.ui.grapheditor.settings
UI for a single JIPipeGraphNode
JIPipeSingleAlgorithmSelectionPanelUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI
 
JIPipeSingleCompartmentSelectionPanelUI - Class in org.hkijena.jipipe.ui.compartments
UI for a single JIPipeProjectCompartment
JIPipeSingleCompartmentSelectionPanelUI(JIPipeGraphEditorUI, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.ui.compartments.JIPipeSingleCompartmentSelectionPanelUI
 
JIPipeSlotConfiguration - Interface in org.hkijena.jipipe.api.data
A slot configuration determines which slots an JIPipeGraphNode should have.
JIPipeSlotConfiguration.Serializer - Class in org.hkijena.jipipe.api.data
Serializes the configuration
JIPipeSlotConfiguration.SlotsChangedEvent - Class in org.hkijena.jipipe.api.data
Triggered when a JIPipeSlotConfiguration was changed
JIPipeSlotEditorUI - Class in org.hkijena.jipipe.ui.grapheditor.settings
An extended slot editor that is more powerful than the "in-place" slot editor
JIPipeSlotEditorUI(JIPipeGraphEditorUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI
 
JIPipeSlotType - Enum in org.hkijena.jipipe.api.data
The slot type
JIPipeTableEditor - Class in org.hkijena.jipipe.ui.tableanalyzer
Spreadsheet UI
JIPipeTableEditor(JIPipeWorkbench, ResultsTableData) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
 
JIPipeTableImporterDialog - Class in org.hkijena.jipipe.ui.tableanalyzer
Dialog to import a table
JIPipeTableImporterDialog(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableImporterDialog
 
JIPipeTemplateSelectionDialog - Class in org.hkijena.jipipe.ui.project
Dialog for selecting templates
JIPipeTemplateSelectionDialog(Window) - Constructor for class org.hkijena.jipipe.ui.project.JIPipeTemplateSelectionDialog
 
JIPipeTestBench - Class in org.hkijena.jipipe.api.testbench
Allows to test one algorithm with multiple parameters
JIPipeTestBench(JIPipeProject, JIPipeGraphNode, JIPipeTestBenchSettings) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
JIPipeTestBenchSettings - Class in org.hkijena.jipipe.api.testbench
Settings for JIPipeTestBench
JIPipeTestBenchSettings() - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
Creates a new instance
JIPipeTestBenchSetupUI - Class in org.hkijena.jipipe.ui.grapheditor.settings
UI for generating JIPipeTestBench
JIPipeTestBenchSetupUI(JIPipeProjectWorkbench, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI
 
JIPipeTestbenchSnapshot - Class in org.hkijena.jipipe.api.testbench
Used by the quick run to backup output data
JIPipeTestbenchSnapshot(JIPipeTestBench) - Constructor for class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
 
JIPipeTestbenchSnapshot.AlgorithmBackup - Class in org.hkijena.jipipe.api.testbench
Backups parameters and storage paths
JIPipeTestBenchUI - Class in org.hkijena.jipipe.ui.testbench
JIPipeTestBenchUI(JIPipeProjectWorkbench, JIPipeTestBench) - Constructor for class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI
 
JIPipeTextEditor - Class in org.hkijena.jipipe.ui.texteditor
 
JIPipeTextEditor(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor
 
JIPipeTraitTableCellRenderer - Class in org.hkijena.jipipe.ui.resultanalysis
JIPipeTraitTableCellRenderer() - Constructor for class org.hkijena.jipipe.ui.resultanalysis.JIPipeTraitTableCellRenderer
Creates a new renderer
JIPipeUITheme - Enum in org.hkijena.jipipe.ui.theme
 
JIPipeValidatable - Interface in org.hkijena.jipipe.api
An interface about a type that reports of the validity of its internal state
JIPipeValidityReport - Class in org.hkijena.jipipe.api
Report about the validity of an object
JIPipeValidityReport() - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport
Creates a new report instance
JIPipeValidityReport.Message - Class in org.hkijena.jipipe.api
A validity report message
JIPipeValidityReport.Response - Enum in org.hkijena.jipipe.api
The response type
JIPipeValidityReportUI - Class in org.hkijena.jipipe.ui.components
JIPipeValidityReportUI(boolean) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI
 
JIPipeValidityReportUI(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI
 
JIPipeVerticalDataSlotUI - Class in org.hkijena.jipipe.ui.grapheditor
Slot UI with horizontal direction
JIPipeVerticalDataSlotUI(JIPipeWorkbench, JIPipeNodeUI, String, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI
Creates a new UI
JIPipeVerticalNodeUI - Class in org.hkijena.jipipe.ui.grapheditor
An algorithm UI for vertical display
JIPipeVerticalNodeUI(JIPipeWorkbench, JIPipeGraphCanvasUI, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
Creates a new UI
JIPipeVirtualData - Class in org.hkijena.jipipe.api.data
Manages virtual data
JIPipeVirtualData(JIPipeData) - Constructor for class org.hkijena.jipipe.api.data.JIPipeVirtualData
Create virtual data from data
JIPipeVirtualData(Class<? extends JIPipeData>, Path, String) - Constructor for class org.hkijena.jipipe.api.data.JIPipeVirtualData
Creates a custom virtual data.
JIPipeWorkbench - Interface in org.hkijena.jipipe.ui
Interface shared by all workbench UIs
JIPipeWorkbenchPanel - Class in org.hkijena.jipipe.ui
Panel that contains a reference to its parent workbench
JIPipeWorkbenchPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.JIPipeWorkbenchPanel
 
JsonAlgorithm - Class in org.hkijena.jipipe.api.grouping
An algorithm that was imported from a Json extension.
JsonAlgorithm(JsonNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm
Creates a new instance
JsonAlgorithm(GraphWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.api.grouping.JsonAlgorithm
Makes a copy
JsonAlgorithmToGroupNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
JsonAlgorithmToGroupNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
JsonData - Class in org.hkijena.jipipe.extensions.strings
 
JsonData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData
 
JsonData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.JsonData
 
JsonDeserializable - Interface in org.hkijena.jipipe.utils
Allows the object to be deserialized in-place from JSON data
JsonExtensionContentListCellRenderer - Class in org.hkijena.jipipe.ui.extensionbuilder
Renders the contents of a JIPipeJsonExtension
JsonExtensionContentListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonExtensionContentListCellRenderer
Creates a new renderer
JsonExtensionLoaderExtension - Class in org.hkijena.jipipe.extensions.jsonextensionloader
Extension that loads JIPipeJsonExtension
JsonExtensionLoaderExtension() - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
JsonExtensionRegistrationTask - Class in org.hkijena.jipipe.extensions.jsonextensionloader
JsonExtensionRegistrationTask(JIPipe, Path, JsonNode) - Constructor for class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
jsonify(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Removes all spaces, and filesystem-unsafe characters from the string and replaces them with dashes Duplicate dashes are removed
jsonify(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Removes all spaces, and filesystem-unsafe characters from the string and replaces them with dashes Duplicate dashes are removed
JsonNodeInfo - Class in org.hkijena.jipipe.api.grouping
JsonNodeInfo() - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Creates a new info
JsonNodeInfo(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Creates a new JsonNodeInfo from a NodeGroup
JsonNodeInfoUI - Class in org.hkijena.jipipe.ui.extensionbuilder
UI around a JsonNodeInfo
JsonNodeInfoUI(JIPipeJsonExtensionWorkbench, JsonNodeInfo) - Constructor for class org.hkijena.jipipe.ui.extensionbuilder.JsonNodeInfoUI
 
JsonNodeRegistrationTask - Class in org.hkijena.jipipe.api.grouping
Registers a JsonNodeInfo
JsonNodeRegistrationTask(JsonNode, JIPipeJsonExtension) - Constructor for class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask
 
JsonUtils - Class in org.hkijena.jipipe.utils
Global utilities for JSON data

K

KEY_DATA - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Path key for data
KEY_PARAMETER - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Path key for any parameter
KEY_PROJECT - Static variable in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Path key for project locations
KEY_STROKE_AUTO_LAYOUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_NAVIGATE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_REDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_UNDO - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_ZOOM_IN - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_ZOOM_OUT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KEY_STROKE_ZOOM_RESET - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
KeyDeserializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.KeyDeserializer
 

L

LaplacianSharpen2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen
Wrapper around ImageProcessor
LaplacianSharpen2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm
Instantiates a new node type.
LaplacianSharpen2DAlgorithm(LaplacianSharpen2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm
Instantiates a new node type.
LargeScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts
An editor for ScriptParameter
LargeScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI
Creates new instance
LengthFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
LengthFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.LengthFunction
 
LIGHT_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
LIGHT_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
LIGHT_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
LIGHTEST_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
LineCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
LineCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
Creates a new instance
LineCategoryPlotData(LineCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
Creates a copy
LineStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
LineStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
Creates a new instance
LineStatisticalCategoryPlotData(LineStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
Creates a copy
LineXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
LineXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
Creates a new instance
LineXYPlotData(LineXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
Creates a copy
List() - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List
Creates a new instance
List(Collection<JIPipeAuthorMetadata>) - Constructor for class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List
Makes a copy
List() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter.List
 
List(HyperstackDimensionPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.HyperstackDimensionPairParameter.List
 
List() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List
Creates a new instance
List(MeasurementColumnSortOrder.List) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression.List
 
List(NamedAnnotationGeneratorExpression.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression.List
 
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List
 
List(NamedStringQueryExpression.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List
 
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List
Creates new instance
List(StringPatternExtractionFunction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter.List
Creates a new instance
List(DoubleAndDoublePairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.DoubleAndDoublePairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter.List
Creates a new instance
List(IntegerAndIntegerPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntegerAndIntegerPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter.List
Creates a new instance
List(IntRangeAndIntegerPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.IntRangeAndIntegerPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter.List
Creates a new instance
List(StringAndStringPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter.List
Creates a new instance
List(StringQueryExpressionAndSortOrderPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter.List
Creates a new instance
List(StringQueryExpressionAndStringPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter.List
Creates a new instance
List(StringQueryExpressionAndStringQueryPairParameter.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List
Creates a new instance
List(StringPatternExtraction.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List
Creates a new instance
List(StringOrDouble.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List
Creates a new instance
List(Margin.List) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin.List
Creates a copy
List() - Constructor for class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency.List
 
ListFiles - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Algorithm that lists files in each folder
ListFiles(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
Creates new instance
ListFiles(ListFiles) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
Copies the algorithm
listIssues() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
ListParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.collections
A parameter that is a collection of another parameter type
ListParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter
 
ListParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.collections
Deserializes the parameter
ListParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.collections
Serializes the parameter
ListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.collections
Generic parameter for ListParameter
ListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI
Creates new instance
ListParameterItemParameterAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.collections
Parameter access for one entry in ListParameter
ListParameterItemParameterAccess(JIPipeParameterAccess, List<T>, Class<T>, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
Creates a new instance
ListSelectionMode - Enum in org.hkijena.jipipe.utils
Enum wrapper for ListSelectionModel modes
ListSubfolders - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Algorithms that lists the sub folders for each input folder
ListSubfolders(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
Creates a new instance
ListSubfolders(ListSubfolders) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
Copies the algorithm
listTemplates() - Static method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
Lists all available templates
LnColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a logarithm (base e) function
LnColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation
 
load() - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
Loads the project
load(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Loads settings from the specified file
loadData(Path) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreview
 
loadData(Path) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview
Run in a different thread.
loadDependenciesFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject
Deserializes the set of project dependencies from JSON.
loadFromFolder(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeRun
Loads a JIPipeRun from a folder
loadFromJson(Path) - Static method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Loads the table from JSON
loadLookAndFeelFromSettings() - Static method in class org.hkijena.jipipe.utils.UIUtils
Attempts to override the look and feel based on the JIPipe settings
loadLUTFromImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
loadMetadataFromJson(JsonNode) - Static method in class org.hkijena.jipipe.api.JIPipeProject
Deserializes the project metadata from JSON
loadProject(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.api.JIPipeProject
Loads a project from a file
loadProject(Path) - Static method in class org.hkijena.jipipe.JIPipe
Loads a project
loadProject(Path, JIPipeValidityReport) - Static method in class org.hkijena.jipipe.JIPipe
Loads a project
loadProject(JsonNode) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension
Loads a JIPipeJsonExtension from JSON
loadProject(Path) - Static method in class org.hkijena.jipipe.JIPipeJsonExtension
Loads an extension from a file
loadProject(JIPipeJsonExtension, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Loads a project into the window and replaces the current project
loadProject(JIPipeProject, boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Loads a project into the window
loadRoiListFromFile(Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Loads a set of ROI from a zip file
LocalMaxima2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
Wrapper around MaximumFinder
LocalMaxima2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
Instantiates a new node type.
LocalMaxima2DAlgorithm(LocalMaxima2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
Creates a copy
LocalMaxima2DAlgorithm.OutputType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
Available output types
LocalMaximumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalMaximumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
Instantiates a new node type.
LocalMaximumFilter2DAlgorithm(LocalMaximumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
Instantiates a new node type.
LocalMaximumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalMaximumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
Instantiates a new node type.
LocalMaximumFilter3DAlgorithm(LocalMaximumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
Instantiates a new node type.
LocalMinimumFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalMinimumFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
Instantiates a new node type.
LocalMinimumFilter2DAlgorithm(LocalMinimumFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
Instantiates a new node type.
LocalMinimumFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalMinimumFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
Instantiates a new node type.
LocalMinimumFilter3DAlgorithm(LocalMinimumFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
Instantiates a new node type.
LocalVarianceFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalVarianceFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
Instantiates a new node type.
LocalVarianceFilter2DAlgorithm(LocalVarianceFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
Instantiates a new node type.
LocalVarianceFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
LocalVarianceFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
Instantiates a new node type.
LocalVarianceFilter3DAlgorithm(LocalVarianceFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
Instantiates a new node type.
log(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
Log10ColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a logarithm (base 10) function
Log10ColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation
 
LogEntry(String, LocalDateTime, String, boolean) - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntry
 
LogEntryRenderer() - Constructor for class org.hkijena.jipipe.ui.running.JIPipeLogViewer.LogEntryRenderer
 
logicalAnd() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Applies a logical AND operation to all Roi in this list.
LogicalAndOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
LogicalAndOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalAndOperator
 
LogicalNotOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
LogicalNotOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalNotOperator
 
LogicalOperation - Enum in org.hkijena.jipipe.extensions.parameters.util
Available operations
logicalOr() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Applies a logical OR operation to all Roi in this list.
LogicalOrOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
LogicalOrOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalOrOperator
 
logicalXor() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Applies a logical XOR operation on the list of Roi.
LogicalXOrOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
LogicalXOrOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.LogicalXOrOperator
 
LongList - Class in org.hkijena.jipipe.extensions.parameters.primitives
A list of Long
LongList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongList
Creates a new empty list
LongList(LongList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongList
Creates a copy
LongParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Long
LongParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
LongPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Long
LongPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
LongRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Long
LongRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.LongRangeParameterGenerator
Creates a new instance
LUTInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
 
LUTInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
LUTInverterAlgorithm(LUTInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 

M

MacroFlag - Class in org.hkijena.jipipe.utils
Helper for optional macro flags
MacroFlag(String, boolean) - Constructor for class org.hkijena.jipipe.utils.MacroFlag
 
MacroSetting - Class in org.hkijena.jipipe.utils
Helper class for ImageJ macro parameters
MacroSetting(String, Object) - Constructor for class org.hkijena.jipipe.utils.MacroSetting
 
MacroUtils - Class in org.hkijena.jipipe.utils
Utility functions for macros
MacroWrapperAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
An algorithm that wraps around an ImageJ macro
MacroWrapperAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
MacroWrapperAlgorithm(MacroWrapperAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
Copies the algorithm
Main - Class in org.hkijena.ijupdatercli
 
Main() - Constructor for class org.hkijena.ijupdatercli.Main
 
main(String[]) - Static method in class org.hkijena.ijupdatercli.Main
 
main(String[]) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
main(String[]) - Static method in class org.hkijena.jipipe.extensions.clij2.GenerateDocumentationUtil
 
main(String[]) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
Main - Class in org.hkijena.jipipe.installer.linux
 
Main() - Constructor for class org.hkijena.jipipe.installer.linux.Main
 
main(String[]) - Static method in class org.hkijena.jipipe.installer.linux.Main
 
main(String...) - Static method in class org.hkijena.jipipe.JIPipeGUICommand
 
main(String...) - Static method in class org.hkijena.jipipe.JIPipeLauncher
 
main(String[]) - Static method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand
 
main(String[]) - Static method in class org.hkijena.jipipe.ui.components.SplashScreen
 
main(String[]) - Static method in class org.hkijena.jipipe.utils.NaturalOrderComparator
 
MainWindow - Class in org.hkijena.jipipe.installer.linux.ui
 
MainWindow() - Constructor for class org.hkijena.jipipe.installer.linux.ui.MainWindow
 
makeBorderlessReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text pane (that can do HTML)
makeBorderlessWithoutMargin(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Makes a component borderless
makeBorderlessWithoutMargin(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a component borderless
makeDataNonVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Loads all virtual data into memory
makeDataVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Unloads all data into the virtual cache
makeFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Replaces all characters invalid for filesystems with spaces Assumes that the string is a filename, so path operators are not allowed.
makeFilesystemCompatible(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Replaces all characters invalid for filesystems with spaces Assumes that the string is a filename, so path operators are not allowed.
makeFlat(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Makes a button flat
makeFlat(AbstractButton, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Makes a button flat
makeFlat(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a button flat
makeFlat(AbstractButton, Color, int, int, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a button flat
makeFlat25x25(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Makes a button flat and 25x25 size
makeFlat25x25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a button flat and 25x25 size
makeFlatH25(AbstractButton) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Makes a button flat and have a height of 25px
makeFlatH25(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a button flat and have a height of 25px
makeMacroCompatible(String) - Static method in class org.hkijena.jipipe.utils.MacroUtils
Makes a string macro-compatible
makeMarkdownReader(MarkdownDocument, String[]) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a JTextPane that displays Markdown content
makeMontage2(List<ImagePlus>, List<String>, int, int, double, int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
Creates a montage and returns it as an ImagePlus.
makeMontage2(ImagePlus, int, int, double, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
Creates a montage and returns it as an ImagePlus.
makeNonVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
makeNonVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Makes the whole cache virtual
makeReadonlyBorderlessTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text area
makeReadonlyBorderlessTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text field
makeReadonlyTextArea(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Creates a readonly text area Cannot do HTML.
makeReadonlyTextArea(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text area Cannot do HTML.
makeReadonlyTextField(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text field
makeReadonlyTextPane(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a readonly text pane (that can do HTML)
makeToggleReadonly(JToggleButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a toggle button readonly without greying it out
makeUniqueString(String, String, Collection<String>) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Makes an unique string by adding a counting variable to its end if it already exists
makeUniqueString(String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Makes an unique string by adding a counting variable to its end if it already exists
makeUniqueString(String, String, Collection<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils
Makes an unique string by adding a counting variable to its end if it already exists
makeUniqueString(String, String, Predicate<String>) - Static method in class org.hkijena.jipipe.utils.StringUtils
Makes an unique string by adding a counting variable to its end if it already exists
makeURLLabel(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a label that contains a URL and opens the URL when clicked
makeVirtual(JIPipeProgressInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
Makes the data virtual if not already
makeVirtual(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Makes the whole cache virtual
ManagerUI - Class in org.hkijena.jipipe.ui.ijupdater
 
ManagerUI(JIPipeWorkbench, JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
ManualThreshold16U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Wrapper around ImageProcessor
ManualThreshold16U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
Instantiates a new node type.
ManualThreshold16U2DAlgorithm(ManualThreshold16U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
Instantiates a new node type.
ManualThreshold8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Wrapper around ImageProcessor
ManualThreshold8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
Instantiates a new node type.
ManualThreshold8U2DAlgorithm(ManualThreshold8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
Instantiates a new node type.
mapToAnnotationList(Map<String, String>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Converts an annotation map to a list
Margin - Class in org.hkijena.jipipe.extensions.parameters.roi
Parameter that allows users to define a rectangle ROI.
Margin() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin
Creates a new instance
Margin(Margin) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.Margin
Creates a copy
Margin.List - Class in org.hkijena.jipipe.extensions.parameters.roi
List parameter of Margin
MarginParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi
Editor for Margin
MarginParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI
 
MarkdownDocument - Class in org.hkijena.jipipe.installer.linux.ui.utils
Contains Markdown data
MarkdownDocument(String) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownDocument
 
MarkdownDocument - Class in org.hkijena.jipipe.ui.components
Contains Markdown data
MarkdownDocument(String) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownDocument
 
MarkdownReader - Class in org.hkijena.jipipe.installer.linux.ui.utils
Panel that allows reading of Markdown data
MarkdownReader() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
MarkdownReader(MarkdownDocument) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
MarkdownReader - Class in org.hkijena.jipipe.ui.components
Panel that allows reading of Markdown data
MarkdownReader(boolean) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader
 
MarkdownReader(boolean, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.MarkdownReader
 
MaskToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
MaskToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
MaskToRoiAlgorithm(MaskToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
Returns if the action shows up
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
matches(Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
Matrix2D<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix
A 2D matrix of floats
Matrix2D(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Creates a new instance
Matrix2D(Matrix2D<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Creates a copy
Matrix2D.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.matrix
Deserializes the parameter
Matrix2D.Serializer - Class in org.hkijena.jipipe.extensions.parameters.matrix
Serializes the parameter
Matrix2DFloat - Class in org.hkijena.jipipe.extensions.parameters.matrix
Matrix containing Float
Matrix2DFloat() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat
Creates a new object
Matrix2DFloat(Matrix2DFloat) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DFloat
Creates a copy
Matrix2DParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.matrix
Editor for Matrix2D
Matrix2DParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI
Creates new instance
max - Variable in class org.hkijena.jipipe.utils.PointRange
 
maybeAddSeparator() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
measure(ImagePlus, ImageStatisticsSetParameter, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Generates ROI statistics
Measurement - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
Measurements defined by Measurements.
MeasurementColumn - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
Measurements defined by Measurements.
MeasurementColumnSortOrder - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
A key-value pair parameter of MeasurementColumn to SortOrder
MeasurementColumnSortOrder() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder
Creates a new instance
MeasurementColumnSortOrder(MeasurementColumnSortOrder) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumnSortOrder
Creates a copy
MeasurementColumnSortOrder.List - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
MeasurementExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
A variable source that contains the ImageJ measurements.
MeasurementExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource
 
MedianBlurFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around RankFilters
MedianBlurFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
Instantiates a new node type.
MedianBlurFilter2DAlgorithm(MedianBlurFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
Instantiates a new node type.
MedianBlurFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around GaussianBlur
MedianBlurFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
Instantiates a new node type.
MedianBlurFilter3DAlgorithm(MedianBlurFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
Instantiates a new node type.
MedianBlurGreyscale8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around ImageProcessor
MedianBlurGreyscale8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm
Instantiates a new node type.
MedianBlurGreyscale8U2DAlgorithm(MedianBlurGreyscale8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm
Instantiates a new node type.
MedianBlurRGB2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around ImageProcessor
MedianBlurRGB2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm
Instantiates a new node type.
MedianBlurRGB2DAlgorithm(MedianBlurRGB2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm
Instantiates a new node type.
MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
MEDIUM_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
MeijeringVesselness2DFeatures - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
Applies CLAHE image enhancing
MeijeringVesselness2DFeatures(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
MeijeringVesselness2DFeatures(MeijeringVesselness2DFeatures) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
Copies the algorithm
MemoryStatusUI - Class in org.hkijena.jipipe.ui.components
Shows the current memory consumption
MemoryStatusUI() - Constructor for class org.hkijena.jipipe.ui.components.MemoryStatusUI
Creates a new instance
MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
MENU_DISABLED_FOREGROUND - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
menuBar - Variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
MenuExtension - Class in org.hkijena.jipipe.ui.extension
An extension for the extension builder or analysis tool menu.
MenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.extension.MenuExtension
Creates a new instance
MenuTarget - Enum in org.hkijena.jipipe.ui.extension
Determines in which menu a menu extension is placed
merge(Collection<JIPipeAnnotation>) - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
Ensures that a list of annotations has unique names.
merge(String, String) - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
Merges the new annotation value into the existing one according to the strategy
merge(JIPipeParameterCollection, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Merges parameters into a given node
MergeAnnotations - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
MergeAnnotations(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
Creates a new instance
MergeAnnotations(MergeAnnotations) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
Creates a copy
MergeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Wrapper around ImageProcessor
MergeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
Instantiates a new node type.
MergeChannelsAlgorithm(MergeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
Instantiates a new node type.
MergeChannelsAlgorithm.ChannelColor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Color a slice can be mapped to
mergeColumns(List<Integer>, String, String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a new column that consists of a combination of the selected values.
MergeColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
MergeColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm
Creates a new instance
MergeColumnsAlgorithm(MergeColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm
Creates a copy
MergeDataSlots - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Merges the input slot tables into one data slot
MergeDataSlots(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots
 
MergeDataSlots(MergeDataSlots) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots
Copies the algorithm
MergeRoiListsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
MergeRoiListsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm
Instantiates a new node type.
MergeRoiListsAlgorithm(MergeRoiListsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm
Instantiates a new node type.
MergeTableColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
MergeTableColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
Creates a new instance
MergeTableColumnsAlgorithm(MergeTableColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
Creates a copy
MergeTableRowsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
MergeTableRowsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm
Creates a new instance
MergeTableRowsAlgorithm(MergeTableRowsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm
Creates a copy
mergeWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Merges another graph into this graph The input is not copied!
mergeWith(ROIListData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Merges the ROI from another data into this one.
MERGING_ALGORITHM_DESCRIPTION - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
MergingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python
An algorithm that allows to run Python code
MergingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
Creates a new instance
MergingPythonScriptAlgorithm(MergingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
Creates a copy
Message(String, String, String, String) - Constructor for class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
Message(MessagePanel, MessagePanel.MessageType, String, JButton) - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
messageLogged(LogMessage) - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
MessagePanel - Class in org.hkijena.jipipe.ui.components
Panel that carries multiple user-friendly messages
MessagePanel() - Constructor for class org.hkijena.jipipe.ui.components.MessagePanel
 
MessagePanel.Message - Class in org.hkijena.jipipe.ui.components
 
MessagePanel.MessageType - Enum in org.hkijena.jipipe.ui.components
 
METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
METADATA_KEY - Static variable in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
min - Variable in class org.hkijena.jipipe.utils.PointRange
 
minimumLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout
 
minTabWidth - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
MiscellaneousNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
MiscellaneousNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
MissingUpdateSiteResolver - Class in org.hkijena.jipipe.ui.ijupdater
 
MissingUpdateSiteResolver(Context, JIPipeRegistryIssues) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver
 
ModernMetalTheme - Class in org.hkijena.jipipe.installer.linux.ui.utils
 
ModernMetalTheme() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
Creates an instance of OceanTheme
ModernMetalTheme - Class in org.hkijena.jipipe.ui.theme
 
ModernMetalTheme() - Constructor for class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Creates an instance of OceanTheme
ModernSpinnerUI - Class in org.hkijena.jipipe.ui.theme
 
ModernSpinnerUI() - Constructor for class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
ModifiedEvent(JIPipeProjectCache) - Constructor for class org.hkijena.jipipe.api.JIPipeProjectCache.ModifiedEvent
Creates a new event
ModifiedFlowLayout - Class in org.hkijena.jipipe.ui.components
A modified version of FlowLayout that allows containers using this Layout to behave in a reasonable manner when placed inside a JScrollPane
ModifiedFlowLayout() - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout
 
ModifiedFlowLayout(int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout
 
ModifiedFlowLayout(int, int, int) - Constructor for class org.hkijena.jipipe.ui.components.ModifiedFlowLayout
 
ModifyAndMergeTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that annotates all data with the same annotation
ModifyAndMergeTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
ModifyAndMergeTablesScript(ModifyAndMergeTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
Copies the algorithm
ModifyAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that annotates all data with the same annotation
ModifyAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
ModifyAnnotationScript(ModifyAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
Copies the algorithm
ModifyTableColumnNamesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
 
ModifyTableColumnNamesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
ModifyTableColumnNamesAlgorithm(ModifyTableColumnNamesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
ModifyTablesScript - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that annotates all data with the same annotation
ModifyTablesScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
ModifyTablesScript(ModifyTablesScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
Copies the algorithm
MonochromeColorIcon - Class in org.hkijena.jipipe.ui.components
Icon that takes an existing image icon and uses it as mask for recoloring
MonochromeColorIcon(ImageIcon) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon
Creates a white icon
MonochromeColorIcon(ImageIcon, Color) - Constructor for class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
MontageToStackAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Implementation of MontageMaker
MontageToStackAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
MontageToStackAlgorithm(MontageToStackAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
months - Static variable in class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel
 
Morphology2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
Morphology2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
Instantiates a new node type.
Morphology2DAlgorithm(Morphology2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
Instantiates a new node type.
MorphologyBinary2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
MorphologyBinary2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
Instantiates a new node type.
MorphologyBinary2DAlgorithm(MorphologyBinary2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
Instantiates a new node type.
MorphologyBinary2DAlgorithm.Operation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Available transformation functions
MorphologyFillHoles2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
MorphologyFillHoles2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
Instantiates a new node type.
MorphologyFillHoles2DAlgorithm(MorphologyFillHoles2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
Instantiates a new node type.
MorphologyInternalGradient2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
MorphologyInternalGradient2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
Instantiates a new node type.
MorphologyInternalGradient2DAlgorithm(MorphologyInternalGradient2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
Instantiates a new node type.
MorphologyOutline2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
MorphologyOutline2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm
Instantiates a new node type.
MorphologyOutline2DAlgorithm(MorphologyOutline2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm
Instantiates a new node type.
MorphologySkeletonize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
Wrapper around ImageProcessor
MorphologySkeletonize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm
Instantiates a new node type.
MorphologySkeletonize2DAlgorithm(MorphologySkeletonize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm
Instantiates a new node type.
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseClicked(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseDragged(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseEntered(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseExited(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseMoved(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mousePressed(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
mouseReleased(MouseEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
mouseWheelMoved(MouseWheelEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
moveAllCacheToNonVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
moveAllCacheToVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
moveCacheToNonVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
moveCacheToVirtual() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
moveDown(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Moves the specified slot down in its order
moveDown(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
MoveNodesGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
MoveNodesGraphHistorySnapshot(JIPipeGraph, String) - Constructor for class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
Creates a snapshot of all node locations
moveSeriesDown(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Moves the series down in order
moveSeriesUp(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Moves the series up in order
moveToGridLocation(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Moves the node to a grid location
moveToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
moveToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
moveToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
moveToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
moveToNextGridPoint(Point, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Moves the node to the next grid location, given a real location
moveToStoredGridLocation(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Moves the UI back to the stored grid location
moveUp(String, JIPipeSlotType) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Moves the specified slot up in its order
moveUp(String, JIPipeSlotType) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
MSTGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout
MST-based auto-layout method
MSTGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod
 
MSTGraphAutoLayoutMethod.Edge - Class in org.hkijena.jipipe.ui.grapheditor.layout
 
MSTGraphAutoLayoutMethod.Node - Class in org.hkijena.jipipe.ui.grapheditor.layout
 
MultiDataSlotTableColumnRenderer(JIPipeMergedDataSlotTable) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI.MultiDataSlotTableColumnRenderer
Creates a new instance
MultiFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater
Opened when selecting one file
MultiFileSelectionPanel(JIPipeWorkbench, ManagerUI, Set<FileObject>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.MultiFileSelectionPanel
 
MultiParameterAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms
An algorithm that takes multi parameters
MultiParameterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
Creates a new instance
MultiParameterAlgorithm(MultiParameterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
Copies the algorithm
MultiParameterAlgorithmsExtension - Class in org.hkijena.jipipe.extensions.multiparameters
Extension that provides capabilities to run multiple parameters
MultiParameterAlgorithmsExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
MultiParameterAlgorithmSlotConfiguration - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms
Slot configuration for MultiParameterAlgorithm
MultiParameterAlgorithmSlotConfiguration() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration
Creates a new instance
MultiParameterNodeInfo - Class in org.hkijena.jipipe.extensions.multiparameters.algorithms
MultiParameterNodeInfo() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
Creates a new instance
MultiParametersExtension - Class in org.hkijena.jipipe.extensions.multiparameters
Extension that provides capabilities to run multiple parameters
MultiParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
MultiSelectionModel - Class in org.hkijena.jipipe.ui.components
Selection model for multiple selections
MultiSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.MultiSelectionModel
 
MultiTemplateMatchingAlgorithm - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching
 
MultiTemplateMatchingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
MultiTemplateMatchingAlgorithm(MultiTemplateMatchingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
MultiTemplateMatchingExtension - Class in org.hkijena.jipipe.extensions.ijmultitemplatematching
Extension that adds ImageJ2 algorithms
MultiTemplateMatchingExtension() - Constructor for class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
MutableTableColumn - Interface in org.hkijena.jipipe.extensions.tables
A TableColumn that carries data and is therefore mutable

N

name() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation
 
NamedAnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
NamedAnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression
 
NamedAnnotationGeneratorExpression(PairParameter<AnnotationGeneratorExpression, String>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedAnnotationGeneratorExpression
 
NamedAnnotationGeneratorExpression.List - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
NamedStringQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
NamedStringQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression
 
NamedStringQueryExpression(PairParameter<String, StringQueryExpression>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression
 
NamedStringQueryExpression.List - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
nameEquals(JIPipeAnnotation) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns true if the names are equal
nameEquals(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns true if the name equals the string
nameEquals(JIPipeAnnotation, JIPipeAnnotation) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Returns true if both have the same name.
NaturalOrderComparator - Class in org.hkijena.jipipe.utils
 
NaturalOrderComparator() - Constructor for class org.hkijena.jipipe.utils.NaturalOrderComparator
 
NavigationRenderer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI.NavigationRenderer
Creates a new instance
Neighborhood2D - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1
 
newInstance(Object...) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
Creates a new instance
newInstance() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo
 
newInstance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo
 
newInstance() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeInfo
Creates a new node type instance
newInstance() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterTypeInfo
 
newInstance() - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
Creates a new non-null instance of the parameter type
newInstance() - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterNodeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanPrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ByteParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BytePrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoubleParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DoublePrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FloatPrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.IntPrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.LongPrimitiveParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
newInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
newInstance(Class<?>, Object...) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
Creates a new class instance.
NewPlotMenuExtension - Class in org.hkijena.jipipe.extensions.plots
Adds an entry "New plot" to the JIPipe menu
NewPlotMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.plots.NewPlotMenuExtension
Creates a new instance
newProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Creates a new project and asks the user if it should be opened in this or a new window
newProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Creates a new project.
newProjectFromTemplate() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Creates a new project from template
NewTableMenuExtension - Class in org.hkijena.jipipe.extensions.tables
Adds an entry "New table" to the JIPipe menu
NewTableMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tables.NewTableMenuExtension
Creates a new instance
newTest() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
Creates a new test
newText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
newText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
newWindow(Context, JIPipeJsonExtension, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Opens a new window
newWindow(Context, JIPipeProject, boolean, boolean) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Creates a new window
NO_EMPTY_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel
Flag for ParameterPanel.
NO_GROUP_HEADERS - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel
Flag for ParameterPanel.
Node(JIPipeParameterTree.Node, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
Creates a node
Node(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
NodeConnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEvent
 
NodeContextActionWrapperUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
NodeContextActionWrapperUIContextAction(JIPipeNodeInfo, String, String, Icon, Method) - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
NodeDisconnectedEvent(JIPipeGraph, JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEvent
 
NodeGroup - Class in org.hkijena.jipipe.api.grouping
A sub-graph algorithm that can be defined by a user
NodeGroup(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup
Creates a new instance
NodeGroup(NodeGroup) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup
Creates a copy
NodeGroup(JIPipeGraph, boolean) - Constructor for class org.hkijena.jipipe.api.grouping.NodeGroup
Initializes from an existing graph
NodeGroupContents - Class in org.hkijena.jipipe.api.grouping.parameters
 
NodeGroupContents() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
Creates a new empty instance
NodeGroupContents(NodeGroupContents) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
Makes a copy
NodeGroupContents.Deserializer - Class in org.hkijena.jipipe.api.grouping.parameters
 
NodeGroupContents.Serializer - Class in org.hkijena.jipipe.api.grouping.parameters
 
NodeGroupContentsParameterEditorUI - Class in org.hkijena.jipipe.api.grouping.parameters
NodeGroupContentsParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI
Creates new instance
NodeInfoRegisteredEvent(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.JIPipe.NodeInfoRegisteredEvent
 
NodeSelectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.NodeSelectedEvent
 
NodeSlotsChangedEvent(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeSlotsChangedEvent
 
NodeToolBoxMenuExtension - Class in org.hkijena.jipipe.extensions.nodetoolboxtool
 
NodeToolBoxMenuExtension(JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxMenuExtension
 
NodeToolBoxToolExtension - Class in org.hkijena.jipipe.extensions.nodetoolboxtool
 
NodeToolBoxToolExtension() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
NodeToolBoxTransferHandler - Class in org.hkijena.jipipe.extensions.nodetoolboxtool
 
NodeToolBoxTransferHandler() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler
 
NodeToolBoxWindow - Class in org.hkijena.jipipe.extensions.nodetoolboxtool
 
NodeToolBoxWindow() - Constructor for class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxWindow
 
NodeUIContextAction - Interface in org.hkijena.jipipe.ui.grapheditor.contextmenu
An action that is applied one or multiple algorithms
NonCollidingRectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections
Encapsulates drawing rectangular lines
NonCollidingRectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
NONE - Static variable in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
No flags
NONE - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Flag that indicates no modifications, meaning (1) No documentation, and (2) no scrolling
NONE - Static variable in class org.hkijena.jipipe.ui.components.FormPanel
Flag that indicates no modifications, meaning (1) No documentation, and (2) no scrolling
normal - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
normalize(List<TableColumn>, int) - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization
Generates columns that have the same number of true rows
normalize(List<TableColumn>) - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization
Generates columns that have the same number of true rows
normalizeTabRuns(int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout
 
nullToEmpty(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Returns an empty string if s is null otherwise returns s
nullToEmpty(Object) - Static method in class org.hkijena.jipipe.utils.StringUtils
Returns an empty string if s is null otherwise returns s
NumberParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Editor for a any numeric parameter
NumberParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI
 
NumberParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
Attached to the getter or setter of Number parameter to setup the GUI
NumberRangeParameterGenerator<T extends Number & Comparable<T>> - Class in org.hkijena.jipipe.extensions.parameters.generators
Generator that creates instances of Number.
NumberRangeParameterGenerator(JIPipeWorkbench, Class<? extends Number>) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator
Creates a new instance
NumericDivideFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericDivideFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericDivideFunctionOperator
 
NumericEulerConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants
 
NumericEulerConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericEulerConstant
 
NumericExponentFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericExponentFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericExponentFunctionOperator
 
NumericFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericFunctionOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericFunctionOperator
 
NumericGreaterThanOrEqualPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericGreaterThanOrEqualPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanOrEqualPredicateOperator
 
NumericGreaterThanPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericGreaterThanPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericGreaterThanPredicateOperator
 
NumericLessThanOrEqualPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericLessThanOrEqualPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanOrEqualPredicateOperator
 
NumericLessThanPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericLessThanPredicateOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericLessThanPredicateOperator
 
NumericModuloFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericModuloFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericModuloFunctionOperator
 
NumericMultiplyFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericMultiplyFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericMultiplyFunctionOperator
 
NumericOrStringFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericOrStringFunctionOperator(String, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericOrStringFunctionOperator
 
NumericPiConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants
 
NumericPiConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericPiConstant
 
NumericPredicateOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
NumericPredicateOperator(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.NumericPredicateOperator
 
NumericTauConstant - Class in org.hkijena.jipipe.extensions.parameters.expressions.constants
 
NumericTauConstant() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.constants.NumericTauConstant
 

O

OccurrencesColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Converts each entry into a the number of occurrences within the column
OccurrencesColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation
 
OCEAN_BLACK - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
OCEAN_BLACK - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
OCEAN_BLACK - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
OCEAN_DROP - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
OCEAN_DROP - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
OCEAN_DROP - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
ok - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
OMEColorMode - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters
Wrapper around Bioformats color modes
OMEExport(OMEImageData, Path, OMEExporterSettings) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
Copy of the run method in Exporter that allows configuration via a parameter object
OMEExporterSettings - Class in org.hkijena.jipipe.extensions.imagejdatatypes.parameters
 
OMEExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
OMEExporterSettings(OMEExporterSettings) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
OMEImageData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes
Data that is a representation of all information saved in Bio-Formats
OMEImageData(ImagePlus, ROIListData, OMEXMLMetadata) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
OMEImageDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Adapter between ImagePlus and OMEImageData
OMEImageDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.OMEImageDataImageJAdapter
 
OMEImageDataImportIntoImageJOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
OMEImageDataImportIntoImageJOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
OMEImageDataImportIntoJIPipeOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
OMEImageDataImportIntoJIPipeOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
OMEImageDataImportViaBioFormatsOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
OMEImageDataImportViaBioFormatsOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
OMEImageDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
OMEImageDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataPreview
Creates a new renderer
OMEImageResultImportRun - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
OMEImageResultImportRun(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
OMEImageToImagePlusTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
OMEImageToImagePlusTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
OmeImageToOMEXMLTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
OmeImageToOMEXMLTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
OMEImageToROITypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
OMEImageToROITypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
OMEROCredentials - Class in org.hkijena.jipipe.extensions.omero
 
OMEROCredentials() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
OMEROCredentials(OMEROCredentials) - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
OMERODatasetReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes
 
OMERODatasetReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
OMERODatasetReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMERODatasetReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource
 
OMERODatasetReferenceDataSource(OMERODatasetReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource
 
OMEROExtension - Class in org.hkijena.jipipe.extensions.omero
Provides data types dor handling strings
OMEROExtension() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
OMEROFindDatasetAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMEROFindDatasetAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
OMEROFindDatasetAlgorithm(OMEROFindDatasetAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
OMEROFindImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMEROFindImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
OMEROFindImageAlgorithm(OMEROFindImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
OMEROFindProjectAlgorithm - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMEROFindProjectAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
OMEROFindProjectAlgorithm(OMEROFindProjectAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
OMEROImageReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes
 
OMEROImageReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
OMEROImageReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMEROImageReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource
 
OMEROImageReferenceDataSource(OMEROImageReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource
 
OMEROProjectReferenceData - Class in org.hkijena.jipipe.extensions.omero.datatypes
Data that stores a reference to an OMERO project
OMEROProjectReferenceData(long) - Constructor for class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
OMEROProjectReferenceDataSource - Class in org.hkijena.jipipe.extensions.omero.datasources
 
OMEROProjectReferenceDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource
 
OMEROProjectReferenceDataSource(OMEROProjectReferenceDataSource) - Constructor for class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource
 
OMEROSettings - Class in org.hkijena.jipipe.extensions.omero
 
OMEROSettings() - Constructor for class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
OMEROToJIPipeLogger - Class in org.hkijena.jipipe.extensions.omero.util
 
OMEROToJIPipeLogger(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
OMEROUploadToJIPipeLogger - Class in org.hkijena.jipipe.extensions.omero.util
 
OMEROUploadToJIPipeLogger(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROUploadToJIPipeLogger
 
OMEROUtils - Class in org.hkijena.jipipe.extensions.omero.util
 
OMEROUtils() - Constructor for class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
 
OMETIFFCompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.parameters
Available compression methods
onActionRequested(JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Triggers when an JIPipeNodeUI requests an action.
onAlgorithmActionRequested(JIPipeGraphCanvasUI.AlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
Listens to events of algorithms requesting some action
onAlgorithmConnected(JIPipeGraph.NodeConnectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Should be triggered when a connection is made
onAlgorithmEvent(JIPipeNodeUI.AlgorithmEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Triggered when something interesting happens in the graph and the UI should scroll to it
onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Should trigger when a successful connection was made.
onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderUI
Should trigger when a target slot was successfully found.
onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Should trigger when a successful connection was made.
onAlgorithmFinderSuccess(AlgorithmFinderSuccessEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderUI
Should trigger when a target slot was successfully found.
onAlgorithmGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Should be triggered when the slots are changed
onAlgorithmGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Should be triggered when the algorithm graph is changed.
onAlgorithmParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Should be triggered when an algorithm's name parameter is changed
onAlgorithmRegistryChanged(JIPipe.NodeInfoRegisteredEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Should be triggered when new algorithms are registered.
onAlgorithmRemoved(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Listens to changes in the algorithm graph.
onAlgorithmSelected(JIPipeNodeInfoPicker.NodeSelectedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI
Triggered when a trait is selected
onAlgorithmSelected(JIPipeGraphCanvasUI.AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Should be triggered when an algorithm was selected
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
Triggered when the algorithm's slots are changed
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Should be triggered when an JIPipeGraphNode's slots are changed.
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
Triggered when algorithm slots are changed
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Should trigger when the target algorithm slots are changed
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Should trigger when the target algorithm slots are changed
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Should be triggered when the algorithm's slots are changed.
onAlgorithmSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI
Triggered when the algorithm slots are changed
onApplicationSettingsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu
Triggered when the list should be changed
onApplicationSettingsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.RecentProjectsMenu
Triggered when the list should be changed
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel
 
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor
 
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheBrowserUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheMultiDataSlotTableUI
Triggered when the cache was updated
onCacheUpdated(JIPipeProjectCache.ModifiedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeDataSlotCacheManagerUI
Triggered when the cache was updated
onCompartmentGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProject
Triggered when the compartment graph is changed
onCompartmentRemoved(JIPipeProject.CompartmentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Triggered when a compartment is deleted.
onContentAddedEvent(JIPipe.ExtensionContentAddedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
Triggered when content was added
onContentRemovedEvent(JIPipe.ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
Triggered when content was removed
onContentRemovedEvent(JIPipe.ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
Triggered when content was removed
onDatatypeRegistered(JIPipe.DatatypeRegisteredEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Triggered when a datatype was registered.
onDefaultActionRequested(JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
 
onDisconnected(JIPipeGraph.NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
Triggered when an algorithm input is disconnected
onExtensionDiscovered(JIPipe.ExtensionDiscoveredEvent) - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Triggered when an extension is registered.
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel
Triggered when an extension is registered
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton
Triggered when an extension is registered.
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerPanel
Triggered when a new extension is registered
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
Informs the user about registered extensions.
onExtensionRegistered(JIPipe.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Informs the user about registered extensions.
onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
onFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
onGraphCanvasUpdated(JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Triggered when the wrapped graph changed
onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Should be triggered when the algorithm graph is changed
onGraphChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onGraphParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
Triggered when the parameter structure of an algorithm is changed Updates the list of available parameters
onGraphStructureChanged(JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
Triggered when the algorithm graph was changed
onInstallerSuccessful(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow
 
onInstallerUnsuccessful(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.MainWindow
 
onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
onInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
onNavigatorNavigate(SearchBox.SelectedEvent<Object>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Triggered when the user selected something in the navigator
onNodeSlotsChanged(JIPipeSlotConfiguration.SlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onOpenAlgorithmSettings(JIPipeGraphCanvasUI.AlgorithmSelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Should be triggered when an JIPipeNodeUI requests that the algorithm settings should be opened
onOpenCompartment(JIPipeGraphCanvasUI.DefaultAlgorithmUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI
Should be triggered when a user double-clicks a graph node to open it in the graph editor
onOperationFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
onOperationInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI
 
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
 
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
Triggered when a name was changed
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Listens for changes in parameters
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI
Triggered when a plot builder parameter is changed
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Triggered when a parameter was changed
onParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onParameterChangedEvent(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Triggered when a parameter value was changed.
onParameterReferenceChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
Triggered when the references were changed
onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
onParameterReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
onParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Triggered when the plot builder's parameters are changed
onParametersChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI
Triggered when the plot builder's parameters are changed
onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParametersUI
Triggered when the parameter structure was changed
onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Should be triggered when an JIPipeGraphNode's parameter structure is changed.
onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Triggered when the parameter structure of this algorithm was changed
onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Triggered when a source informs that the parameter structure was changed.
onParameterStructureChanged(JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
Triggered when the parameter structure was changed
onPixelHover(ImageViewerPanelCanvas.PixelHoverEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeInfoUI
 
onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionInfoUI
 
onRecentProjectsChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.JIPipeProjectInfoUI
 
onReferencesChanged(ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Triggered when some parameters were changed down the line
onRunCancelled(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer
 
onRunCancelled(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeLogViewer
 
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI
Triggered when the run is finished
onRunFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onRunInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunSettingsUI
Triggered when the run is interrupted
onRunStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
onSelectionChanged(JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
onSettingChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Triggered when a setting was changed
onSettingChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.components.PreviewControlUI
 
onSlotConfigurationChanged(JIPipeSlotConfiguration.SlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Should be triggered when a slot is added to the slot configuration
onSlotConfigurationParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Triggered when a parameter is changed within the slot configuration.
onSlotConnected(JIPipeGraph.NodeConnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Called by an JIPipeGraph when a slot was connected.
onSlotDisconnected(JIPipeGraph.NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Called by the JIPipeGraph to trigger slot inheritance updates when a slot is disconnected
onSlotNameChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Triggered when the custom name of the slot definition is changed
onSlotNameChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI
Triggered when the custom name of the slot definition is changed
onSlotsChanged(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
Triggered when the slots were changed
onSlotsUpdated(JIPipeGraph.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
Triggered when algorithm slots are changed
onSourceParameterChanged(JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
onStatus(JIPipeProgressInfo.StatusUpdatedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
onTableStructureChangedEvent(TableModelEvent) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI
 
onTraitSelected(JIPipeDataTypePicker.SelectedDataTypesChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI
Triggered when a trait is selected
onWindowClosed(WindowClosedEvent) - Method in class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher
 
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
Triggered when a scheduled worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Triggered when a worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI
 
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI
Triggered when a worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
Triggered when a scheduled worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Triggered when a worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Triggered when a worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
Triggered when a scheduled worker is finished
onWorkerFinished(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI
Triggered when the quick run finished calculating
onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
Triggered when a schedules worker is interrupted
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Triggered when a worker is interrupted
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserUI
 
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI
Triggered when a worker is interrupted
onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
Triggered when a schedules worker is interrupted
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Triggered when a worker is interrupted
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Triggered when a worker is interrupted
onWorkerInterrupted(RunUIWorkerFinishedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
Triggered when a schedules worker is interrupted
onWorkerInterrupted(RunUIWorkerInterruptedEvent) - Method in class org.hkijena.jipipe.ui.testbench.JIPipeTestBenchUI
Triggered when the quick run finished calculating
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
Triggered when a worker reports progress
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Triggered when a worker reports progress
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
Triggered when a worker reports progress
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Triggered when a worker reports progress
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Triggered when a worker reports progress
onWorkerProgress(RunUIWorkerProgressEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
Triggered when a worker reports progress
onWorkerStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Triggered when a worker is started
onWorkerStarted(RunUIWorkerStartedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
 
onZoomChanged(ZoomViewPort.ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
onZoomChanged(ZoomViewPort.ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomLabel
 
OpenCacheBrowserInWindowUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
OpenCacheBrowserInWindowUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
OpenCLKernelScript - Class in org.hkijena.jipipe.extensions.clij2.parameters
A OpenCL kernel script
OpenCLKernelScript() - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript
Creates a new instance
OpenCLKernelScript(OpenCLKernelScript) - Constructor for class org.hkijena.jipipe.extensions.clij2.parameters.OpenCLKernelScript
Makes a copy
openCompartmentGraph(JIPipeProjectCompartment, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Opens the graph editor for specified compartment
OpenContainingFolderDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data
Import operation that opens the containing folder.
OpenContainingFolderDataImportOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
openContextMenu(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Opens the context menu at the location.
openDirectories(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose multiple directories
openDirectories(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose multiple directories
openDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a directory
openDirectory(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a directory
openErrorDialog(Component, Exception) - Static method in class org.hkijena.jipipe.utils.UIUtils
Opens a dialog showing an exception
openFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a file
openFile(Component, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a file
openFileInNative(Path) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Opens a website with given URL
openFileInNative(Path) - Static method in class org.hkijena.jipipe.utils.UIUtils
Opens a website with given URL
openFiles(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose multiple files
openFiles(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose multiple files
openGroupNodeGraph(JIPipeWorkbench, NodeGroup, boolean) - Static method in class org.hkijena.jipipe.ui.grouping.JIPipeNodeGroupUI
Opens the graph editor for specified compartment
OpenImageJTool - Class in org.hkijena.jipipe.extensions.tools
 
OpenImageJTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.OpenImageJTool
Creates a new instance
OpenInImageJDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
OpenInImageJDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.OpenInImageJDataDisplay
 
OpenInNativeApplicationDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data
 
OpenInNativeApplicationDataImportOperation(String, String, String[]) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
OpenInNativeApplicationDataImportOperation(String...) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
openInNewTab(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor
 
openNewToolBox() - Static method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxWindow
 
openPath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a file or directory
openPath(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a file or directory
OpenPathDataOperation - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis
 
OpenPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
openPaths(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose multiple files or directories
openPaths(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose multiple files or directories
OpenPlotInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis
 
OpenPlotInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Opens a project from a file Asks the user if it should be opened in this or a new window
openProject() - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Displays a file chooser where the user can open a project.
openProject(Path) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Opens a project from a file or folder Asks the user if it should replace the currently displayed project
openProject() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Opens a file chooser where the user can select a project file
openProjectAndOutput() - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Opens a file chooser where the user can select a result folder
openRestoreMenu(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
OpenResultsTableInImageJDataOperation - Class in org.hkijena.jipipe.extensions.tables.display
 
OpenResultsTableInImageJDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
OpenResultsTableInJIPipeTabDataOperation - Class in org.hkijena.jipipe.extensions.tables.display
 
OpenResultsTableInJIPipeTabDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
openROIs(IMetadata, ImagePlus[]) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.
openROIs(IMetadata, ImagePlus[], boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
Opens the rois and converts them into ImageJ Rois.
OpenTextInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.core.data
 
OpenTextInJIPipeDataOperation(String...) - Constructor for class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
openValidityReportDialog(Component, JIPipeValidityReport, boolean) - Static method in class org.hkijena.jipipe.utils.UIUtils
Opens a dialog showing a validity report
openWebsite(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Opens a website with given URL
openWebsite(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Opens a website with given URL
OPERATOR_AND_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_AND_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_ELEMENT_ACCESS_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_ELEMENT_ACCESS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NEGATE_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NEGATE_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_DIVIDE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_EQUALS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_EQUALS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_EXPONENT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_GREATER_THAN - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_GREATER_THAN_OR_EQUAL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_LESS_THAN - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_LESS_THAN_OR_EQUAL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_MINUS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_MODULO - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_MULTIPLY - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_NEGATE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_NEGATE_HIGH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_STRING_PLUS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_UNEQUALS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_NUMERIC_UNEQUALS_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_OR_SYMBOL - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_OR_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_STRING_CONTAINS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_STRING_CONTAINS2 - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_VARIABLE_EXISTS - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_VARIABLE_RESOLVE - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OPERATOR_XOR_TEXT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
OperatorSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions
Panel that allows the user to select an ExpressionOperator
OperatorSelectorList(ExpressionEvaluator) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList
 
OperatorSelectorList.ExpressionOperatorRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
OptionalAnnotationNameParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter used for creating annotations
OptionalAnnotationNameParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
 
OptionalAnnotationNameParameter(OptionalStringParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
 
OptionalAnnotationNameParameter(String, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
 
OptionalBooleanParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Boolean
OptionalBooleanParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter
Creates a new instance
OptionalBooleanParameter(OptionalBooleanParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter
Creates a copy
OptionalByteParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Byte
OptionalByteParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter
Creates a new instance
OptionalByteParameter(OptionalByteParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter
Creates a copy
OptionalColorMapParameter - Class in org.hkijena.jipipe.extensions.parameters.colors
Optional ColorMap
OptionalColorMapParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter
Creates a new instance
OptionalColorMapParameter(OptionalColorMapParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter
Creates a copy
OptionalColorParameter - Class in org.hkijena.jipipe.extensions.parameters.colors
Optional Color
OptionalColorParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter
Creates a new instance
OptionalColorParameter(Color, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter
 
OptionalColorParameter(OptionalColorParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter
Creates a copy
OptionalDataInfoRefParameter - Class in org.hkijena.jipipe.extensions.parameters.references
 
OptionalDataInfoRefParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalDataInfoRefParameter
 
OptionalDataInfoRefParameter(OptionalDataInfoRefParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalDataInfoRefParameter
 
OptionalDoubleParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Double
OptionalDoubleParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter
Creates a new instance
OptionalDoubleParameter(OptionalDoubleParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter
Creates a copy
OptionalFloatParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Float
OptionalFloatParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter
Creates a new instance
OptionalFloatParameter(OptionalFloatParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter
Creates a copy
OptionalIntegerParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Integer
OptionalIntegerParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter
Creates a new instance
OptionalIntegerParameter(OptionalIntegerParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter
Creates a copy
OptionalIntModificationParameter - Class in org.hkijena.jipipe.extensions.parameters.roi
OptionalIntModificationParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter
 
OptionalIntModificationParameter(OptionalIntModificationParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.OptionalIntModificationParameter
 
OptionalLongParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Long
OptionalLongParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter
Creates a new instance
OptionalLongParameter(OptionalLongParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter
Creates a copy
OptionalNodeInfoRefParameter - Class in org.hkijena.jipipe.extensions.parameters.references
 
OptionalNodeInfoRefParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalNodeInfoRefParameter
 
OptionalNodeInfoRefParameter(OptionalNodeInfoRefParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.references.OptionalNodeInfoRefParameter
 
OptionalParameter<T> - Class in org.hkijena.jipipe.extensions.parameters.optional
A parameter that is optional
OptionalParameter(Class<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
OptionalParameter(OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
Produces a shallow copy You have to implement deep content copying yourself
OptionalParameter.Deserializer<T> - Class in org.hkijena.jipipe.extensions.parameters.optional
Deserializes the parameter
OptionalParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.optional
Serializes the parameter
OptionalParameterContentAccess<T> - Class in org.hkijena.jipipe.extensions.parameters.optional
Parameter access for the key entry in PairParameter
OptionalParameterContentAccess(JIPipeParameterAccess, OptionalParameter<T>) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
Creates a new instance
OptionalParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.optional
Generic parameter for OptionalParameter
OptionalParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI
Creates new instance
OptionalPathParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Path
OptionalPathParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter
Creates a new instance
OptionalPathParameter(OptionalPathParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter
Creates a copy
OptionalShortParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional Short
OptionalShortParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter
Creates a new instance
OptionalShortParameter(OptionalShortParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter
Creates a copy
OptionalStringParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
Optional String
OptionalStringParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter
Creates a new instance
OptionalStringParameter(OptionalStringParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter
Creates a copy
OptionalStringParameter(String, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter
 
OPTIONS - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
OPTIONS - Static variable in class org.hkijena.jipipe.ui.components.MarkdownReader
 
orElse(String, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Returns the string if its not null or empty or the alternative
orElse(String, String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Returns the string if its not null or empty or the alternative
org.hkijena.ijupdatercli - package org.hkijena.ijupdatercli
 
org.hkijena.jipipe - package org.hkijena.jipipe
 
org.hkijena.jipipe.api - package org.hkijena.jipipe.api
 
org.hkijena.jipipe.api.compartments - package org.hkijena.jipipe.api.compartments
 
org.hkijena.jipipe.api.compartments.algorithms - package org.hkijena.jipipe.api.compartments.algorithms
 
org.hkijena.jipipe.api.compartments.datatypes - package org.hkijena.jipipe.api.compartments.datatypes
 
org.hkijena.jipipe.api.compat - package org.hkijena.jipipe.api.compat
 
org.hkijena.jipipe.api.data - package org.hkijena.jipipe.api.data
 
org.hkijena.jipipe.api.exceptions - package org.hkijena.jipipe.api.exceptions
 
org.hkijena.jipipe.api.grouping - package org.hkijena.jipipe.api.grouping
 
org.hkijena.jipipe.api.grouping.events - package org.hkijena.jipipe.api.grouping.events
 
org.hkijena.jipipe.api.grouping.parameters - package org.hkijena.jipipe.api.grouping.parameters
 
org.hkijena.jipipe.api.history - package org.hkijena.jipipe.api.history
 
org.hkijena.jipipe.api.nodes - package org.hkijena.jipipe.api.nodes
 
org.hkijena.jipipe.api.nodes.categories - package org.hkijena.jipipe.api.nodes.categories
 
org.hkijena.jipipe.api.parameters - package org.hkijena.jipipe.api.parameters
 
org.hkijena.jipipe.api.registries - package org.hkijena.jipipe.api.registries
 
org.hkijena.jipipe.api.testbench - package org.hkijena.jipipe.api.testbench
 
org.hkijena.jipipe.extensions - package org.hkijena.jipipe.extensions
 
org.hkijena.jipipe.extensions.annotation - package org.hkijena.jipipe.extensions.annotation
 
org.hkijena.jipipe.extensions.annotation.algorithms - package org.hkijena.jipipe.extensions.annotation.algorithms
 
org.hkijena.jipipe.extensions.annotation.datasources - package org.hkijena.jipipe.extensions.annotation.datasources
 
org.hkijena.jipipe.extensions.clij2 - package org.hkijena.jipipe.extensions.clij2
 
org.hkijena.jipipe.extensions.clij2.algorithms - package org.hkijena.jipipe.extensions.clij2.algorithms
 
org.hkijena.jipipe.extensions.clij2.datatypes - package org.hkijena.jipipe.extensions.clij2.datatypes
 
org.hkijena.jipipe.extensions.clij2.parameters - package org.hkijena.jipipe.extensions.clij2.parameters
 
org.hkijena.jipipe.extensions.clij2.ui - package org.hkijena.jipipe.extensions.clij2.ui
 
org.hkijena.jipipe.extensions.core - package org.hkijena.jipipe.extensions.core
 
org.hkijena.jipipe.extensions.core.data - package org.hkijena.jipipe.extensions.core.data
 
org.hkijena.jipipe.extensions.filesystem - package org.hkijena.jipipe.extensions.filesystem
 
org.hkijena.jipipe.extensions.filesystem.algorithms - package org.hkijena.jipipe.extensions.filesystem.algorithms
 
org.hkijena.jipipe.extensions.filesystem.compat - package org.hkijena.jipipe.extensions.filesystem.compat
 
org.hkijena.jipipe.extensions.filesystem.datasources - package org.hkijena.jipipe.extensions.filesystem.datasources
 
org.hkijena.jipipe.extensions.filesystem.dataypes - package org.hkijena.jipipe.extensions.filesystem.dataypes
 
org.hkijena.jipipe.extensions.filesystem.resultanalysis - package org.hkijena.jipipe.extensions.filesystem.resultanalysis
 
org.hkijena.jipipe.extensions.ijmultitemplatematching - package org.hkijena.jipipe.extensions.ijmultitemplatematching
 
org.hkijena.jipipe.extensions.imagejalgorithms - package org.hkijena.jipipe.extensions.imagejalgorithms
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1 - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
 
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform - package org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
org.hkijena.jipipe.extensions.imagejalgorithms.utils - package org.hkijena.jipipe.extensions.imagejalgorithms.utils
 
org.hkijena.jipipe.extensions.imagejdatatypes - package org.hkijena.jipipe.extensions.imagejdatatypes
 
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms - package org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
org.hkijena.jipipe.extensions.imagejdatatypes.compat - package org.hkijena.jipipe.extensions.imagejdatatypes.compat
 
org.hkijena.jipipe.extensions.imagejdatatypes.datasources - package org.hkijena.jipipe.extensions.imagejdatatypes.datasources
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5 - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft
 
org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale - package org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale
 
org.hkijena.jipipe.extensions.imagejdatatypes.display - package org.hkijena.jipipe.extensions.imagejdatatypes.display
 
org.hkijena.jipipe.extensions.imagejdatatypes.parameters - package org.hkijena.jipipe.extensions.imagejdatatypes.parameters
 
org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis - package org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
org.hkijena.jipipe.extensions.imagejdatatypes.util - package org.hkijena.jipipe.extensions.imagejdatatypes.util
 
org.hkijena.jipipe.extensions.imagejdatatypes.util.measure - package org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
 
org.hkijena.jipipe.extensions.imagejdatatypes.viewer - package org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
org.hkijena.jipipe.extensions.jsonextensionloader - package org.hkijena.jipipe.extensions.jsonextensionloader
 
org.hkijena.jipipe.extensions.multiparameters - package org.hkijena.jipipe.extensions.multiparameters
 
org.hkijena.jipipe.extensions.multiparameters.algorithms - package org.hkijena.jipipe.extensions.multiparameters.algorithms
 
org.hkijena.jipipe.extensions.multiparameters.datasources - package org.hkijena.jipipe.extensions.multiparameters.datasources
 
org.hkijena.jipipe.extensions.multiparameters.datatypes - package org.hkijena.jipipe.extensions.multiparameters.datatypes
 
org.hkijena.jipipe.extensions.nodetoolboxtool - package org.hkijena.jipipe.extensions.nodetoolboxtool
 
org.hkijena.jipipe.extensions.omero - package org.hkijena.jipipe.extensions.omero
 
org.hkijena.jipipe.extensions.omero.algorithms - package org.hkijena.jipipe.extensions.omero.algorithms
 
org.hkijena.jipipe.extensions.omero.datasources - package org.hkijena.jipipe.extensions.omero.datasources
 
org.hkijena.jipipe.extensions.omero.datatypes - package org.hkijena.jipipe.extensions.omero.datatypes
 
org.hkijena.jipipe.extensions.omero.util - package org.hkijena.jipipe.extensions.omero.util
 
org.hkijena.jipipe.extensions.parameters - package org.hkijena.jipipe.extensions.parameters
 
org.hkijena.jipipe.extensions.parameters.collections - package org.hkijena.jipipe.extensions.parameters.collections
 
org.hkijena.jipipe.extensions.parameters.colors - package org.hkijena.jipipe.extensions.parameters.colors
 
org.hkijena.jipipe.extensions.parameters.editors - package org.hkijena.jipipe.extensions.parameters.editors
 
org.hkijena.jipipe.extensions.parameters.enums - package org.hkijena.jipipe.extensions.parameters.enums
 
org.hkijena.jipipe.extensions.parameters.expressions - package org.hkijena.jipipe.extensions.parameters.expressions
 
org.hkijena.jipipe.extensions.parameters.expressions.constants - package org.hkijena.jipipe.extensions.parameters.expressions.constants
 
org.hkijena.jipipe.extensions.parameters.expressions.functions - package org.hkijena.jipipe.extensions.parameters.expressions.functions
 
org.hkijena.jipipe.extensions.parameters.expressions.operators - package org.hkijena.jipipe.extensions.parameters.expressions.operators
 
org.hkijena.jipipe.extensions.parameters.expressions.variables - package org.hkijena.jipipe.extensions.parameters.expressions.variables
 
org.hkijena.jipipe.extensions.parameters.functions - package org.hkijena.jipipe.extensions.parameters.functions
 
org.hkijena.jipipe.extensions.parameters.generators - package org.hkijena.jipipe.extensions.parameters.generators
 
org.hkijena.jipipe.extensions.parameters.matrix - package org.hkijena.jipipe.extensions.parameters.matrix
 
org.hkijena.jipipe.extensions.parameters.optional - package org.hkijena.jipipe.extensions.parameters.optional
 
org.hkijena.jipipe.extensions.parameters.pairs - package org.hkijena.jipipe.extensions.parameters.pairs
 
org.hkijena.jipipe.extensions.parameters.patterns - package org.hkijena.jipipe.extensions.parameters.patterns
 
org.hkijena.jipipe.extensions.parameters.primitives - package org.hkijena.jipipe.extensions.parameters.primitives
 
org.hkijena.jipipe.extensions.parameters.references - package org.hkijena.jipipe.extensions.parameters.references
 
org.hkijena.jipipe.extensions.parameters.roi - package org.hkijena.jipipe.extensions.parameters.roi
 
org.hkijena.jipipe.extensions.parameters.scripts - package org.hkijena.jipipe.extensions.parameters.scripts
 
org.hkijena.jipipe.extensions.parameters.table - package org.hkijena.jipipe.extensions.parameters.table
 
org.hkijena.jipipe.extensions.parameters.util - package org.hkijena.jipipe.extensions.parameters.util
 
org.hkijena.jipipe.extensions.plots - package org.hkijena.jipipe.extensions.plots
 
org.hkijena.jipipe.extensions.plots.converters - package org.hkijena.jipipe.extensions.plots.converters
 
org.hkijena.jipipe.extensions.plots.datatypes - package org.hkijena.jipipe.extensions.plots.datatypes
 
org.hkijena.jipipe.extensions.plots.parameters - package org.hkijena.jipipe.extensions.plots.parameters
 
org.hkijena.jipipe.extensions.plots.ui.resultanalysis - package org.hkijena.jipipe.extensions.plots.ui.resultanalysis
 
org.hkijena.jipipe.extensions.plots.utils - package org.hkijena.jipipe.extensions.plots.utils
 
org.hkijena.jipipe.extensions.python - package org.hkijena.jipipe.extensions.python
 
org.hkijena.jipipe.extensions.settings - package org.hkijena.jipipe.extensions.settings
 
org.hkijena.jipipe.extensions.strings - package org.hkijena.jipipe.extensions.strings
 
org.hkijena.jipipe.extensions.strings.datasources - package org.hkijena.jipipe.extensions.strings.datasources
 
org.hkijena.jipipe.extensions.tables - package org.hkijena.jipipe.extensions.tables
 
org.hkijena.jipipe.extensions.tables.algorithms - package org.hkijena.jipipe.extensions.tables.algorithms
 
org.hkijena.jipipe.extensions.tables.datatypes - package org.hkijena.jipipe.extensions.tables.datatypes
 
org.hkijena.jipipe.extensions.tables.display - package org.hkijena.jipipe.extensions.tables.display
 
org.hkijena.jipipe.extensions.tables.operations.converting - package org.hkijena.jipipe.extensions.tables.operations.converting
 
org.hkijena.jipipe.extensions.tables.operations.integrating - package org.hkijena.jipipe.extensions.tables.operations.integrating
 
org.hkijena.jipipe.extensions.tables.parameters - package org.hkijena.jipipe.extensions.tables.parameters
 
org.hkijena.jipipe.extensions.tables.parameters.collections - package org.hkijena.jipipe.extensions.tables.parameters.collections
 
org.hkijena.jipipe.extensions.tables.parameters.enums - package org.hkijena.jipipe.extensions.tables.parameters.enums
 
org.hkijena.jipipe.extensions.tables.parameters.processors - package org.hkijena.jipipe.extensions.tables.parameters.processors
 
org.hkijena.jipipe.extensions.tools - package org.hkijena.jipipe.extensions.tools
 
org.hkijena.jipipe.extensions.utils - package org.hkijena.jipipe.extensions.utils
 
org.hkijena.jipipe.extensions.utils.algorithms - package org.hkijena.jipipe.extensions.utils.algorithms
 
org.hkijena.jipipe.extensions.utils.datatypes - package org.hkijena.jipipe.extensions.utils.datatypes
 
org.hkijena.jipipe.extensions.utils.display - package org.hkijena.jipipe.extensions.utils.display
 
org.hkijena.jipipe.installer.linux - package org.hkijena.jipipe.installer.linux
 
org.hkijena.jipipe.installer.linux.api - package org.hkijena.jipipe.installer.linux.api
 
org.hkijena.jipipe.installer.linux.ui - package org.hkijena.jipipe.installer.linux.ui
 
org.hkijena.jipipe.installer.linux.ui.events - package org.hkijena.jipipe.installer.linux.ui.events
 
org.hkijena.jipipe.installer.linux.ui.utils - package org.hkijena.jipipe.installer.linux.ui.utils
 
org.hkijena.jipipe.ui - package org.hkijena.jipipe.ui
 
org.hkijena.jipipe.ui.batchassistant - package org.hkijena.jipipe.ui.batchassistant
 
org.hkijena.jipipe.ui.cache - package org.hkijena.jipipe.ui.cache
 
org.hkijena.jipipe.ui.compartments - package org.hkijena.jipipe.ui.compartments
 
org.hkijena.jipipe.ui.compat - package org.hkijena.jipipe.ui.compat
 
org.hkijena.jipipe.ui.compendium - package org.hkijena.jipipe.ui.compendium
 
org.hkijena.jipipe.ui.components - package org.hkijena.jipipe.ui.components
 
org.hkijena.jipipe.ui.data - package org.hkijena.jipipe.ui.data
 
org.hkijena.jipipe.ui.events - package org.hkijena.jipipe.ui.events
 
org.hkijena.jipipe.ui.extension - package org.hkijena.jipipe.ui.extension
 
org.hkijena.jipipe.ui.extensionbuilder - package org.hkijena.jipipe.ui.extensionbuilder
 
org.hkijena.jipipe.ui.extensions - package org.hkijena.jipipe.ui.extensions
 
org.hkijena.jipipe.ui.grapheditor - package org.hkijena.jipipe.ui.grapheditor
 
org.hkijena.jipipe.ui.grapheditor.algorithmfinder - package org.hkijena.jipipe.ui.grapheditor.algorithmfinder
 
org.hkijena.jipipe.ui.grapheditor.connections - package org.hkijena.jipipe.ui.grapheditor.connections
 
org.hkijena.jipipe.ui.grapheditor.contextmenu - package org.hkijena.jipipe.ui.grapheditor.contextmenu
 
org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard - package org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard
 
org.hkijena.jipipe.ui.grapheditor.layout - package org.hkijena.jipipe.ui.grapheditor.layout
 
org.hkijena.jipipe.ui.grapheditor.settings - package org.hkijena.jipipe.ui.grapheditor.settings
 
org.hkijena.jipipe.ui.grouping - package org.hkijena.jipipe.ui.grouping
 
org.hkijena.jipipe.ui.ijupdater - package org.hkijena.jipipe.ui.ijupdater
 
org.hkijena.jipipe.ui.parameters - package org.hkijena.jipipe.ui.parameters
 
org.hkijena.jipipe.ui.plotbuilder - package org.hkijena.jipipe.ui.plotbuilder
 
org.hkijena.jipipe.ui.project - package org.hkijena.jipipe.ui.project
 
org.hkijena.jipipe.ui.registries - package org.hkijena.jipipe.ui.registries
 
org.hkijena.jipipe.ui.resultanalysis - package org.hkijena.jipipe.ui.resultanalysis
 
org.hkijena.jipipe.ui.running - package org.hkijena.jipipe.ui.running
 
org.hkijena.jipipe.ui.settings - package org.hkijena.jipipe.ui.settings
 
org.hkijena.jipipe.ui.tableanalyzer - package org.hkijena.jipipe.ui.tableanalyzer
 
org.hkijena.jipipe.ui.testbench - package org.hkijena.jipipe.ui.testbench
 
org.hkijena.jipipe.ui.texteditor - package org.hkijena.jipipe.ui.texteditor
 
org.hkijena.jipipe.ui.theme - package org.hkijena.jipipe.ui.theme
 
org.hkijena.jipipe.utils - package org.hkijena.jipipe.utils
 
outline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Outlines all Roi in this list by the specified algorithm.
OutlineRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
OutlineRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm
Instantiates a new node type.
OutlineRoiAlgorithm(OutlineRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm
Instantiates a new node type.
OutputFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
 
OutputFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource
 
OutputFolderDataSource(OutputFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource
 
OutputSlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections
Parameter that holds a value for each data slot
OutputSlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection
Creates a new instance

P

padSelectedTab(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout
 
paint(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
paint(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel
 
paint(Graphics) - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorMinimap
 
paint(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
paint(Graphics, JComponent) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder
 
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.hkijena.jipipe.utils.RoundedLineBorder
 
paintBottomTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
paintComponent(Graphics) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
paintComponent(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
paintComponent(Graphics) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
paintContentBorderBottomEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintContentBorderLeftEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintContentBorderRightEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintContentBorderTopEdge(Graphics, int, int, int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintFocusIndicator(Graphics, int, Rectangle[], int, Rectangle, Rectangle, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintHighlightBelowTab() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.CheckBoxIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
paintIcon(Component, Graphics, int, int) - Method in class org.hkijena.jipipe.utils.CheckBoxIcon
 
paintIndex - Variable in class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
paintLeftTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintRightTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintTabBackground(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintTabBorder(Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
paintTopTabBorder(int, Graphics, int, int, int, int, int, int, boolean) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
PairParameter<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs
Parameter equivalent of Map.Entry
PairParameter(Class<K>, Class<V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
PairParameter(PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
Creates a copy.
PairParameter.Deserializer<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs
Deserializes the parameter
PairParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.pairs
Serializes the parameter
PairParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.pairs
Editor for PairParameter
PairParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI
Creates new instance
PairParameterKeyAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs
Parameter access for the key entry in PairParameter
PairParameterKeyAccess(JIPipeParameterAccess, PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
Creates a new instance
PairParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.pairs
Allows to control the behavior of PairParameter
PairParameterValueAccess<K,V> - Class in org.hkijena.jipipe.extensions.parameters.pairs
Parameter access for the key entry in PairParameter
PairParameterValueAccess(JIPipeParameterAccess, PairParameter<K, V>) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
Creates a new instance
panel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
PARAM_BOTTOM - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
PARAM_HEIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
PARAM_LEFT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
PARAM_RIGHT - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
PARAM_TOP - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
PARAM_WIDTH - Static variable in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
ParameterAddingEvent(JIPipeDynamicParameterCollection, JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent
 
ParameterChangedEvent(Object, String) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEvent
 
ParameterColumn() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
Creates a new instance.
ParameterColumn(ParameterTable.ParameterColumn) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
Creates a copy
ParameterColumn(String, String, Class<?>) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
Creates a new instance
ParameterInfo - Class in org.hkijena.jipipe.extensions.parameters.expressions
Information about the parameters
ParameterInfo(String, String, Class<?>...) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.ParameterInfo
 
ParameterPanel - Class in org.hkijena.jipipe.ui.parameters
ParameterPanel(JIPipeWorkbench, JIPipeParameterCollection, MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
ParameterReferencesChangedEvent - Class in org.hkijena.jipipe.api.grouping.events
Triggered by GraphNodeParameters and related classes
ParameterReferencesChangedEvent() - Constructor for class org.hkijena.jipipe.api.grouping.events.ParameterReferencesChangedEvent
 
ParametersData - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes
Stores the parameters of an algorithm
ParametersData() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
ParametersData.Serializer - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes
Serializes ParametersData
ParametersDataDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources
Generates ParametersData objects
ParametersDataDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition
Creates a new instance
ParametersDataDefinition(ParametersDataDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition
Copies the algorithm
ParametersDataTableDefinition - Class in org.hkijena.jipipe.extensions.multiparameters.datasources
Generates ParametersData objects
ParametersDataTableDefinition(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition
Creates a new instance
ParametersDataTableDefinition(ParametersDataTableDefinition) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition
Creates a copy
ParameterSlotAlgorithmSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
ParameterSlotAlgorithmSettings(JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
ParameterSlotPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python
An algorithm that allows to run Python code
ParameterSlotPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
Creates a new instance
ParameterSlotPythonScriptAlgorithm(ParameterSlotPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
Creates a copy
ParameterStructureChangedEvent(JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEvent
 
ParameterTable - Class in org.hkijena.jipipe.extensions.parameters.table
Table of other parameters
ParameterTable() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Creates a new table
ParameterTable(ParameterTable) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Creates a copy
ParameterTable.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.table
Deserializes a ParameterTable
ParameterTable.ParameterColumn - Class in org.hkijena.jipipe.extensions.parameters.table
Column in the parameter table
ParameterTable.Serializer - Class in org.hkijena.jipipe.extensions.parameters.table
Serializes a ParameterTable
ParameterTableCellAccess - Class in org.hkijena.jipipe.extensions.parameters.table
Implements the access to table cell
ParameterTableCellAccess(JIPipeParameterAccess, ParameterTable, int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
Creates a new instance
ParameterTableEditorUI - Class in org.hkijena.jipipe.extensions.parameters.table
ParameterTableEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI
Creates new instance
ParameterTesterMenuExtension - Class in org.hkijena.jipipe.extensions.parameters
Adds an entry "New table" to the JIPipe menu
ParameterTesterMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.ParameterTesterMenuExtension
Creates a new instance
ParameterTreeUI - Class in org.hkijena.jipipe.ui.components
Displays the contents of JIPipeParameterTree.
ParameterTreeUI() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI
Creates a new empty instance
ParameterTreeUI(JIPipeParameterTree) - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI
Creates a new instance
ParameterTreeUI.Renderer - Class in org.hkijena.jipipe.ui.components
Renders the entries
ParameterUITester - Class in org.hkijena.jipipe.utils
UI that shows all parameter types
ParameterUITester(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.utils.ParameterUITester
Creates a new instance
PARSE_COLOR_DESCRIPTION - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
parseColor(String) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Parses a color
ParseJsonFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ParseJsonFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ParseJsonFunction
 
passParametersToPython(PythonInterpreter, JIPipeCustomParameterCollection) - Static method in class org.hkijena.jipipe.utils.PythonUtils
 
PasswordParameter - Class in org.hkijena.jipipe.extensions.parameters.primitives
A parameter that stores a password
PasswordParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter
 
PasswordParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter
 
PasswordParameter(PasswordParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter
 
PasswordParameter.Deserializer - Class in org.hkijena.jipipe.extensions.parameters.primitives
 
PasswordParameter.Serializer - Class in org.hkijena.jipipe.extensions.parameters.primitives
 
PasswordParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter editor for String
PasswordParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI
 
PasteCompartmentGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
PasteCompartmentGraphHistorySnapshot(JIPipeProject, JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.history.PasteCompartmentGraphHistorySnapshot
 
PasteNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
PasteNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.PasteNodeGraphHistorySnapshot
 
pasteNodes(JIPipeGraphCanvasUI, String) - Static method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
PathData - Class in org.hkijena.jipipe.extensions.filesystem.dataypes
Encapsulates a Path
PathData(Path) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
Initializes file data from a file
PathData(String) - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
PathData() - Constructor for class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
PathDataImageJAdapter - Class in org.hkijena.jipipe.extensions.filesystem.compat
Allows importing of path data from within ImageJ The main 'ImageJ' data type is File, but this also allows conversion from String, Path and ResultsTable.
PathDataImageJAdapter(Class<? extends PathData>) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImageJAdapter
Creates a new instance
PathDataImporterUI - Class in org.hkijena.jipipe.extensions.filesystem.compat
Imports PathData
PathDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.compat.PathDataImporterUI
 
PathDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input file
PathDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
Initializes the algorithm
PathDataSource(PathDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
Copies the algorithm
PathDataToJIPipeOutputConverter - Class in org.hkijena.jipipe.extensions.utils.datatypes
 
PathDataToJIPipeOutputConverter() - Constructor for class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
PathEditor - Class in org.hkijena.jipipe.installer.linux.ui.utils
Text field with a file selection
PathEditor() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
Creates a new file selection that opens a file
PathEditor(PathEditor.IOMode, PathEditor.PathMode) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
PathEditor - Class in org.hkijena.jipipe.ui.components
Text field with a file selection
PathEditor() - Constructor for class org.hkijena.jipipe.ui.components.PathEditor
Creates a new file selection that opens a file
PathEditor(PathEditor.IOMode, PathEditor.PathMode) - Constructor for class org.hkijena.jipipe.ui.components.PathEditor
 
PathEditor.IOMode - Enum in org.hkijena.jipipe.installer.linux.ui.utils
Determines if a path is opened or saved
PathEditor.IOMode - Enum in org.hkijena.jipipe.ui.components
Determines if a path is opened or saved
PathEditor.PathMode - Enum in org.hkijena.jipipe.installer.linux.ui.utils
Determines the type of selected path
PathEditor.PathMode - Enum in org.hkijena.jipipe.ui.components
Determines the type of selected path
PathFilterExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions.variables
ExpressionParameterVariableSource that defines one variable 'x' that references a filesystem path or file name.
PathFilterExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
PathList - Class in org.hkijena.jipipe.extensions.parameters.primitives
Collection of paths.
PathList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList
Creates a new instance
PathList(PathList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathList
Creates a copy
PathListCellRenderer - Class in org.hkijena.jipipe.ui.components
 
PathListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.PathListCellRenderer
 
PathListDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
Provides an input folder
PathListDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
Creates a new instance
PathListDataSource(PathListDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
Copies the algorithm
PathListParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Editor for PathList
PathListParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI
 
PathQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
Expression for querying strings
PathQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
 
PathQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
 
PathQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
 
PathsToJIPipeProjectParametersAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
PathsToJIPipeProjectParametersAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm
 
PathsToJIPipeProjectParametersAlgorithm(PathsToJIPipeProjectParametersAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm
 
PathUtils - Class in org.hkijena.jipipe.utils
Utilities for handling paths
PercentileThreshold8U2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Wrapper around ImageProcessor
PercentileThreshold8U2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
Instantiates a new node type.
PercentileThreshold8U2DAlgorithm(PercentileThreshold8U2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
Instantiates a new node type.
pickColumn(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
Picks or generates a table column based on selecting by name, matching one column by boolean expressions, or using a mathematical expression.
PickNodeDialog - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
PickNodeDialog(Window, Set<JIPipeGraphNode>, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.ui.components.PickNodeDialog
 
Pie2DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
Pie2DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
Creates a new instance
Pie2DPlotData(Pie2DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
Creates a copy
Pie3DPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
Pie3DPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
Creates a new instance
Pie3DPlotData(Pie3DPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
Creates a copy
PiePlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for pie plots.
PiePlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData
Creates a new instance
PiePlotData(PiePlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData
Creates a copy
PixelCoordinate2DExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Variable source that allows to address x, y
PixelCoordinate2DExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.PixelCoordinate2DExpressionParameterVariableSource
 
PixelHoverEvent(Point) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas.PixelHoverEvent
 
PlotColumn - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes
Defines that a PlotData has
PlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains all necessary data to generate a plot
PlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Creates a new empty instance
PlotData(PlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Creates a copy of the provided data
PlotData.Serializer - Class in org.hkijena.jipipe.extensions.plots.datatypes
Serializes the metadata of PlotData
PlotDataSeries - Class in org.hkijena.jipipe.extensions.plots.datatypes
A data series (table) that is rendered as plot series
PlotDataSeries() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
Creates a new instance with a null table
PlotDataSeries(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
Creates a new instance from a ResultsTable
PlotDataSeries(PlotDataSeries) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
Creates a copy
PlotDataSeries.Deserializer - Class in org.hkijena.jipipe.extensions.plots.datatypes
 
PlotDataSeries.Serializer - Class in org.hkijena.jipipe.extensions.plots.datatypes
 
PlotDataSeriesColumnListCellRenderer - Class in org.hkijena.jipipe.ui.plotbuilder
Renders entries
PlotDataSeriesColumnListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.plotbuilder.PlotDataSeriesColumnListCellRenderer
Creates a new renderer
PlotDataSlotPreview - Class in org.hkijena.jipipe.extensions.plots.ui.resultanalysis
Renders a plot data as table cell
PlotDataSlotPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.PlotDataSlotPreview
Creates a new renderer
PlotExporterDialog - Class in org.hkijena.jipipe.ui.components
Dialog that exports plots as image
PlotExporterDialog(JFreeChart) - Constructor for class org.hkijena.jipipe.ui.components.PlotExporterDialog
 
PlotGeneratorAlgorithm - Class in org.hkijena.jipipe.extensions.plots
Algorithm that creates PlotData from ResultsTableData
PlotGeneratorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
Creates a new instance
PlotGeneratorAlgorithm(PlotGeneratorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
Creates a copy
PlotMetadata - Annotation Type in org.hkijena.jipipe.extensions.plots.datatypes
Annotates a PlotData with information about plots
PlotReader - Class in org.hkijena.jipipe.ui.components
Displays a plot
PlotReader() - Constructor for class org.hkijena.jipipe.ui.components.PlotReader
Creates a new instance
PlotsExtension - Class in org.hkijena.jipipe.extensions.plots
Provides a standard selection of plots
PlotsExtension() - Constructor for class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
PlotToImageTypeConverter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
PlotToImageTypeConverter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
PlotToTableConverter - Class in org.hkijena.jipipe.extensions.plots.converters
 
PlotToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
PointRange - Class in org.hkijena.jipipe.utils
Stores three points, representing the center point, and an area around it All values are absolute.
PointRange() - Constructor for class org.hkijena.jipipe.utils.PointRange
Creates a new point range at 0, 0 without areas around them
PointRange(PointRange) - Constructor for class org.hkijena.jipipe.utils.PointRange
 
PointRange(int, int) - Constructor for class org.hkijena.jipipe.utils.PointRange
Creates a new point range without margins around it
PointRange(Point, Point, Point) - Constructor for class org.hkijena.jipipe.utils.PointRange
Creates a point range and initializes all values
preferredLayoutSize(Container) - Method in class org.hkijena.jipipe.ui.components.ModifiedFlowLayout
 
PrefixedIconListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders entries in JIPipeIconPickerDialog
PrefixedIconListCellRenderer(String) - Constructor for class org.hkijena.jipipe.ui.components.PrefixedIconListCellRenderer
 
preview(int, int) - Method in interface org.hkijena.jipipe.api.data.JIPipeData
This function generates a preview component for usage within the GUI Can return null
preview(int, int) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
preview(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
preview(int, int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
preview(int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
PreviewControlUI - Class in org.hkijena.jipipe.ui.components
 
PreviewControlUI() - Constructor for class org.hkijena.jipipe.ui.components.PreviewControlUI
 
previousSlide() - Method in class org.hkijena.jipipe.utils.DotSlideshow
 
PRIMARY1 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY1 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY1 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
PRIMARY2 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY2 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY2 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
PRIMARY3 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY3 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY3 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
PRIMARY4 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY4 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY4 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
PRIMARY5 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY5 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY5 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
PRIMARY6 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
PRIMARY6 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
PRIMARY6 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
print() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Prints messages to the standard error
process(List<String>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
process(List<Object>) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunWorker
 
process(List<Object>) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunWorker
 
ProgressAdapter - Class in org.hkijena.jipipe.ui.ijupdater
Adapter between JIPipe and ImageJ progress implementations
ProgressAdapter(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
ProjectsSettings - Class in org.hkijena.jipipe.extensions.settings
Remembers the last projects
ProjectsSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
ProjectsSettings.ProjectTemplateEnum - Class in org.hkijena.jipipe.extensions.settings
ProjectTemplateEnum() - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum
 
ProjectTemplateEnum(ProjectsSettings.ProjectTemplateEnum) - Constructor for class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum
 
pull() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Extracts ImagePlusData from the GPU memory
pullOutput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
Extracts algorithm output into ImageJ.
pushInput() - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
Pushes selected ImageJ data into the algorithm input slots
PythonExtension - Class in org.hkijena.jipipe.extensions.python
Python nodes
PythonExtension() - Constructor for class org.hkijena.jipipe.extensions.python.PythonExtension
 
PythonScript - Class in org.hkijena.jipipe.extensions.parameters.scripts
Encapsulates ImageJ macro code to be detected by the parameter system
PythonScript() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript
 
PythonScript(PythonScript) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.PythonScript
 
PythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python
An algorithm that allows to run Python code
PythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
Creates a new instance
PythonScriptAlgorithm(PythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
Creates a copy
PythonUtils - Class in org.hkijena.jipipe.utils
Utilities for Jython

Q

query(Map<String, String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression.List
Filters only the named strings where the query applies.
queryAll(Collection<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
Returns all annotations that match the query
queryAll(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
Generates an annotation value
queryAll(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
Generates an annotation value
queryFirst(Collection<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationQueryExpression
Generates an annotation value
queryFirst(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
Queries a string out of the list
queryFirst(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
Queries a string out of the list

R

RadiansToDegreeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a abs(x) function
RadiansToDegreeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation
 
rank(Object, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI.EntryRankingFunction
 
rank(Object, String[]) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceRanking
 
rank(Object, String[]) - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetRanking
 
rank(UpdateSite, String[]) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking
 
rank(T, String[]) - Method in interface org.hkijena.jipipe.utils.RankingFunction
Ranks the value in conjunction with the filter strings
RankedData<T> - Class in org.hkijena.jipipe.utils
 
RankedData(T, String, int[]) - Constructor for class org.hkijena.jipipe.utils.RankedData
 
Ranking() - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI.Ranking
 
RankingFunction<T> - Interface in org.hkijena.jipipe.utils
Models a search ranking function
readFromOverlays() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
Returns rois if any from the overlay.
readFromRoiManager() - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
Returns the rois if any stored in the ROI manager.
readImageFrom(Path, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
Loads an image from a file path
realLocationToGrid(Point, double) - Method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
 
RealTimeProjectRunner - Class in org.hkijena.jipipe.ui.running
A tool that automatically runs 'update cache' when any parameter or graph property is changed
RealTimeProjectRunner(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
rebuild() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheQuery
Rebuilds the stored states
rebuildModel() - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI
Recreates the tree model
rebuildPlot() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Attempts to rebuild the current plot
RecentJsonExtensionsMenu - Class in org.hkijena.jipipe.ui.components
Menu that displays recently opened JIPipeJsonExtension
RecentJsonExtensionsMenu(String, Icon, JIPipeJsonExtensionWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentJsonExtensionsMenu
 
RecentProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders a recent project
RecentProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectListCellRenderer
 
RecentProjectsMenu - Class in org.hkijena.jipipe.ui.components
Menu that displays recently opened JIPipeProject
RecentProjectsMenu(String, Icon, JIPipeProjectWindow) - Constructor for class org.hkijena.jipipe.ui.components.RecentProjectsMenu
 
recheckValidity() - Method in class org.hkijena.jipipe.ui.components.ReloadableValidityChecker
Revalidates the object
recheckValidity() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginValidityCheckerButton
Triggers a validity check
RectangleDeserializer - Class in org.hkijena.jipipe.extensions.parameters.roi
Deserializer for Color
RectangleDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleDeserializer
 
RectangleList - Class in org.hkijena.jipipe.extensions.parameters.roi
List parameter of Rectangle
RectangleList() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList
Creates a new instance
RectangleList(RectangleList) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleList
Creates a copy
RectangleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.roi
Editor for a any numeric parameter
RectangleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI
 
RectangleSerializer - Class in org.hkijena.jipipe.extensions.parameters.roi
Serializer for Rectangle
RectangleSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer
 
RectangularLine - Class in org.hkijena.jipipe.ui.grapheditor.connections
Contains coordinates of a line that is rectangular This abstracts away x and y for horizontal and vertical implementations
RectangularLine(int, int, int, int) - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLine
 
RectangularLineDrawer - Class in org.hkijena.jipipe.ui.grapheditor.connections
Encapsulates drawing rectangular lines
RectangularLineDrawer() - Constructor for class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
red - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
redo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
redo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot
Repeats the operation
redo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory
Repeats the last reverted operation
redo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
redo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
redrawPlot() - Method in class org.hkijena.jipipe.ui.components.PlotReader
Redraws the plot
ReferencedAppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ReferencedAppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm
Instantiates a new node type.
ReferencedAppendRectangularRoiAlgorithm(ReferencedAppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm
Instantiates a new node type.
ReferencedDefineRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
ReferencedDefineRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
Instantiates a new node type.
ReferencedDefineRectangularRoiAlgorithm(ReferencedDefineRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
Instantiates a new node type.
reflectionAccess(JIPipeParameterCollection, Method, Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets up access via reflection The field class is extracted from the getter return type
ReflectionUtils - Class in org.hkijena.jipipe.utils
Utilities around reflection
refreshForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
Recreates the UI elements.
refreshImageInfo() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
refreshList() - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI
 
RefreshRepositoryRun - Class in org.hkijena.jipipe.ui.ijupdater
A run that is used for the updater
RefreshRepositoryRun() - Constructor for class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
refreshSlice() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Updates the UIs for slots
refreshSlots() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
refreshTable() - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
refreshTable() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
Rebuilds the table to show the updated preview
refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
Refreshes the list
refreshTraitList() - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
Refreshes the list
refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree
Rebuilds the tree
refreshTree() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree
Rebuilds the tree
refreshUpdater() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
RegexStringPredicateFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
RegexStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.RegexStringPredicateFunction
 
register() - Method in class org.hkijena.jipipe.api.compartments.JIPipeCompartmentsExtension
 
register() - Method in class org.hkijena.jipipe.api.grouping.GroupingExtension
 
register() - Method in class org.hkijena.jipipe.api.grouping.JsonNodeRegistrationTask
 
register(String, Class<? extends JIPipeData>, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers a data type
register(ImageJDatatypeAdapter) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Registers an adapter
register() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask
 
register() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask
Runs the registration
register(JIPipeNodeInfo, JIPipeDependency) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Registers an algorithm info
register(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Registers a new parameter type
register(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Registers a new settings sheet
register() - Method in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
register() - Method in class org.hkijena.jipipe.extensions.core.CoreExtension
 
register() - Method in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
 
register() - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
 
register() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
 
register() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.multiparameters.MultiParametersExtension
 
register() - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxToolExtension
 
register() - Method in class org.hkijena.jipipe.extensions.omero.OMEROExtension
 
register() - Method in class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
register() - Method in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
register() - Method in class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.strings.StringsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.tables.TablesExtension
 
register() - Method in class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
register() - Method in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 
register(JIPipeJsonExtension) - Method in class org.hkijena.jipipe.JIPipe
Registers a JSON extension
register() - Method in interface org.hkijena.jipipe.JIPipeJavaExtension
Registers custom modules into JIPipe
register() - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Registers the content.
registerCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Registers a category
registerColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
Registers a new operation.
registerConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers a data converter that allows implicit conversion between data types
registerDatatype(String, Class<? extends JIPipeData>, URL, Class<? extends JIPipeResultDataSlotRowUI>, Class<? extends JIPipeResultDataSlotPreview>, JIPipeDataOperation...) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new data type
registerDatatypeConversion(JIPipeDataConverter) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a non-trivial conversion between data types.
registerDatatypeDisplayOperation(String, JIPipeDataDisplayOperation) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers an additional non-default display operation for the data type.
registerDatatypeImportOperation(String, JIPipeDataImportOperation) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers an import operation for the data type.
registerDatatypeOperation(String, JIPipeDataOperation...) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Shortcut for registering import and display operations.
registerDisplayOperation(String, JIPipeDataDisplayOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers an operation that will be available to users in the cache view
registerEnumParameterType(String, Class<? extends Enum<?>>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers an Enum as parameter
registerExpressionFunction(ExpressionFunction, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry
Registers an new function that will be usable within expressions.
registerExpressionFunction(ExpressionFunction, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a function that can be used within expressions.
registerExpressionFunction(ExpressionFunction) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a function that can be used within expressions.
registerGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Registers a UI that can generate parameters
registerGraphEditorToolBarButton(Class<? extends GraphEditorToolBarButtonExtension>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
 
registerGraphEditorToolBarButtonExtension(Class<? extends GraphEditorToolBarButtonExtension>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a custom button for the graph editor toolbar
registerIcon(Class<? extends JIPipeData>, URL) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers a custom icon for a datatype
registerIcon(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Registers a custom icon for a trait
registerImageJDataAdapter(ImageJDatatypeAdapter, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers an adapter between ImageJ and JIPipe data types
registerImporterFor(Class<?>, Class<? extends ImageJDatatypeImporterUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
 
registerImportOperation(String, JIPipeDataImportOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers an operation that will be available to users in the results view (after runs).
registerJsonExtensionFromFile(Path) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Schedules a registration task for the file path
registerJsonExtensionFromResource(String) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Schedules a registration task for a resource path
registerMenu(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.ui.registries.JIPipeCustomMenuRegistry
Registers a new extension
registerMenuExtension(Class<? extends MenuExtension>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a custom menu entry.
registerNodeType(String, Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new node type.
registerNodeType(String, Class<? extends JIPipeGraphNode>, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new node type.
registerNodeType(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new node type.
registerNodeType(JIPipeNodeInfo, URL) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new node type.
registerNodeType(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new node type with additional dependencies.
registerNodeTypeCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a node type category
registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Registers a new parameter type
registerParameterEditor(Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers an editor for any parameter type that inherits from the provided parameter class.
registerParameterGenerator(Class<?>, Class<? extends JIPipeParameterGeneratorUI>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a UI that can generate parameters
registerParameterType(String, Class<?>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new parameter type and respective editors
registerParameterType(String, Class<T>, Class<? extends ListParameter<T>>, Supplier<Object>, Function<Object, Object>, String, String, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new parameter type and respective editors
registerParameterType(JIPipeParameterTypeInfo, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new parameter type and respective editor
registerParameterType(JIPipeParameterTypeInfo, Class<?>, Class<? extends JIPipeParameterEditorUI>) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new parameter type and respective editor
registerResultSlotUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotRowUI>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers a custom UI for a result data slot
registerResultTableCellUI(Class<? extends JIPipeData>, Class<? extends JIPipeResultDataSlotPreview>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Registers a custom renderer for the data displayed in the dataslot result table
registerSettingsSheet(String, String, Icon, String, Icon, JIPipeParameterCollection) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a new settings sheet
registerSubParameter(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Registers a sub-parameter instance to pass ParameterStructureChangedEvent via this algorithm's EventBus
registerTableColumnOperation(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a table column operation.
registerTableColumnOperationAndExpressionFunction(String, ColumnOperation, String, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Registers a table column operation.
relative(int) - Static method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
RelativizeByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
RelativizeByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter
 
RelativizeByParameter(RelativizeByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter
Copies the algorithm
RelativizePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
RelativizePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths
 
RelativizePaths(RelativizePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths
Copies the algorithm
reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContentsParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Reloads the settings from the default file if it exists
reload() - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeAlgorithmIconRefParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeDataInfoRefParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeNodeInfoRefParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.editors.JIPipeParameterCollectionVisibilitiesParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRangeParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2DParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.BooleanParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.EnumParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FileParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.FilePathParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.NumberParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PathListParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.AnchorParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.MarginParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.LargeScriptParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeAuthorMetadataParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.parameters.util.JIPipeParameterCollectionParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI
 
reload() - Method in class org.hkijena.jipipe.ui.extensions.JIPipePluginManagerUIPanel
Reloads the UI
reload() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Reloads the value from the stored parameter
ReloadableValidityChecker - Class in org.hkijena.jipipe.ui.components
Panel that encapsulates a JIPipeValidityReportUI and an JIPipeValidatable.
ReloadableValidityChecker(JIPipeValidatable) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker
 
ReloadableValidityChecker(JIPipeValidatable, MarkdownDocument) - Constructor for class org.hkijena.jipipe.ui.components.ReloadableValidityChecker
 
reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Is called when the button's visual feedback should be updated
reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI
 
reloadButtonStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI
 
reloadEntries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesListEditorUI
Reloads entries in this panel
reloadForm() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
Reloads the form.
reloadList() - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSlotEditorUI
Reloads the list
reloadList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotAvailableDataManagerUI
Reloads the list of data sources
reloadMenuBar() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI
 
reloadMenuBar() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI
Reloads the menu bar
reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
 
reloadMenuBar() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Reloads the menu bar
reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Is called when the name parameter was changed
reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalDataSlotUI
 
reloadName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalDataSlotUI
 
reloadPopupMenu() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeDataSlotUI
Reloads the "Assign" popup menu
reloadSlotUI() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmSourceFinderAlgorithmUI
Reloads the slots
reloadSlotUI() - Method in class org.hkijena.jipipe.ui.grapheditor.algorithmfinder.JIPipeAlgorithmTargetFinderAlgorithmUI
Reloads the slots
REMOVE_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules from mask data types to their respective 8-bit types
removeActionListener(ActionListener) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
removeActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
removeAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Removes an algorithm
removeAllAnnotationsFromData(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Removes an annotation column from the data
RemoveAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Removes a specified annotation
RemoveAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm
 
RemoveAnnotationAlgorithm(RemoveAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm
Copies the algorithm
RemoveArrayAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
RemoveArrayAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
RemoveArrayAnnotationsAlgorithm(RemoveArrayAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
removeAttachment(Class<?>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Removes an attachment
RemoveBorderRoisAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
RemoveBorderRoisAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
Instantiates a new node type.
RemoveBorderRoisAlgorithm(RemoveBorderRoisAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
Instantiates a new node type.
removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Removes a column
removeColumn(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Removes the specified column
RemoveColumnAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that removes columns
RemoveColumnAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm
Creates a new instance
RemoveColumnAlgorithm(RemoveColumnAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm
Creates a copy
removeColumnAt(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Removes the column with the specified index
removeColumns(Collection<String>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Removes the columns with given headings
removeCompartment(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject
Removes a compartment
removeCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Removes a whole compartment from the graph.
removeContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds a new element into the group
removeData(List<TableColumn>) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Removes the data
RemoveDuplicatesFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
RemoveDuplicatesFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.RemoveDuplicatesFunction
 
removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Removes an algorithm from the selection
removeFromSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Removes an algorithm from the selection
removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Removes an annotation of provided type
removeGlobalAnnotation(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Removes an annotation of provided type
removeGroup(GraphNodeParameterReferenceGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
Removes the group
removeHTMLRoot(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Removes the HTML root from HTML
removeHTMLRoot(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Removes the HTML root from HTML
removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes the slot with given name
removeInputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
removeInputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
 
removeLastRow() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Removes the last row.
removeLastRow() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Removes the last row.
RemoveLUTAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
 
RemoveLUTAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
RemoveLUTAlgorithm(RemoveLUTAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
RemoveNAAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
RemoveNAAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm
 
RemoveNAAnnotationColumnsAlgorithm(RemoveNAAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm
 
RemoveNaNColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Sets NaN values to zero
RemoveNaNColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation
 
RemoveNaNFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around RankFilters
RemoveNaNFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
Instantiates a new node type.
RemoveNaNFilter2DAlgorithm(RemoveNaNFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
Instantiates a new node type.
removeNode(JIPipeGraphNode, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Removes an algorithm.
RemoveNodeGraphHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
RemoveNodeGraphHistorySnapshot(JIPipeGraph, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
removeNodes(Set<JIPipeGraphNode>, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Removes multiple nodes at once
RemoveOutliersFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
Wrapper around RankFilters
RemoveOutliersFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
Instantiates a new node type.
RemoveOutliersFilter2DAlgorithm(RemoveOutliersFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
Instantiates a new node type.
RemoveOutliersFilter2DAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
The two different modes of this filter
removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes the slot with given name
removeOutputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
removeOutputSlot(String, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
 
removeParameter(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Removes a parameter
removeParameterByKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Removes a parameter by key
removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
Removes a row
removeRow(int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
Removes the row with the specified index
removeRow(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
removeRows(Collection<Integer>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
removeSelectedROIs() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
removeSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Removes a series
removeSeries(JIPipePlotSeriesBuilder) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
Removes a series from the series builder
removeSnapshot(JIPipeAlgorithmGraphHistorySnapshot) - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory
Removes a snapshot.
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
removeTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
removeUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.DocumentChangeListener
 
removeUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
removeUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
RenameByString - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
RenameByString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString
 
RenameByString(RenameByString) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString
Copies the algorithm
renameColumn(String, String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Renames a column
renameCompartment(String, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Renames a compartment
renamedCopy(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
RenameSingleColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that removes columns
RenameSingleColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
Creates a new instance
RenameSingleColumnsAlgorithm(RenameSingleColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
Creates a copy
RenameTableColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that removes columns
RenameTableColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
Creates a new instance
RenameTableColumnsAlgorithm(RenameTableColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
Creates a copy
RenameTableColumnsToAnnotationAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that removes columns
RenameTableColumnsToAnnotationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
Creates a new instance
RenameTableColumnsToAnnotationAlgorithm(RenameTableColumnsToAnnotationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
Creates a copy
Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Renderer
Creates a new renderer
Renderer() - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Renderer
Creates a new renderer
Renderer() - Constructor for class org.hkijena.jipipe.ui.components.ParameterTreeUI.Renderer
Creates a new instance
renderGenerationTime() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
Formats the generation time
renderIcon(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter
 
renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
Function that renders the icon.
renderIcon(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
Function that renders the icon.
renderIcon(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum
 
renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
 
renderIcon(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
 
renderInputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
renderInputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter
 
renderInputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmInput
 
renderInputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Controls whether to render input slots.
renderLabel(Measurement) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
renderLabel(String) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter
 
renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
Function that renders the label.
renderLabel(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
Function that renders the label.
renderLabel(JIPipeProjectTemplate) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings.ProjectTemplateEnum
 
renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
 
renderLabel(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
 
renderOutputName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
renderOutputName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter
 
renderOutputSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithmOutput
 
renderOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Controls whether to render output slots.
renderParameterName() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
renderParameterName() - Method in class org.hkijena.jipipe.extensions.tables.parameters.processors.IntegratingTableColumnProcessorParameter
 
renderPreview() - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.FilesystemDataSlotPreview
 
renderPreview() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedDataPreview
Renders the preview if it is not already rendered
renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeAsyncResultDataPlotPreview
 
renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeDefaultResultDataSlotPreview
 
renderPreview() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultDataSlotPreview
This function is called from outside to render the preview.
renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
Function that renders the tooltip.
renderTooltip(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
Function that renders the tooltip.
renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
 
renderTooltip(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
 
ReorderDimensionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Algorithm that reorders Hyperstack dimensions
ReorderDimensionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
ReorderDimensionsAlgorithm(ReorderDimensionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
repairGraph() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Repairs the graph by removing old nodes and adding missing ones
replaceCompartmentOutput(JIPipeCompartmentOutput) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Replaces a JIPipeCompartmentOutput by an equivalent IOInterfaceAlgorithm
replaceWith(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Replaces all contents with the ones in the other graph Does not apply copying!
report(JIPipeValidityReport.Response, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports a response
report(JIPipeValidatable) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Passes the report to another JIPipeValidatable
report(boolean, JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports validity or invalidity
reportIsInvalid(JIPipeValidityReport.Message) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports that this report is invalid
reportIsInvalid(String, String, String, Object) - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Reports that this report is invalid
reportIsValid() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport
Report that is report is valid
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.JIPipeProject
 
reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.JIPipeProject
Reports the validity for the target node and its dependencies
reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.api.JIPipeValidatable
Generates a validity report
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
reportValidity(JIPipeValidityReport, JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Reports the validity for the target node and its dependencies
reportValidity(JIPipeValidityReport, JIPipeGraphNode, Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Reports the validity for the target node and its dependencies
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.generators.NumberRangeParameterGenerator
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalAnnotationNameParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipe
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
reportValidity(JIPipeValidityReport) - Method in interface org.hkijena.jipipe.JIPipeDependency
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionProjectValidation
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
reportValidity(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
REQUEST_OPEN_CONTEXT_MENU - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
REQUEST_RUN_AND_SHOW_RESULTS - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
REQUEST_UPDATE_CACHE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
 
requestCancelRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
Cancels the run
requestCancelRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
Cancels the run
requestCancelRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueuePanelUI
Cancels the run
requestFocusInWindow() - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
resetZoom() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
resolve(JIPipeParameterTree) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
Tries to resolve the path
resolve(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
resolve(String, int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
resolve(String) - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus
Adds a new sub-category to the current task.
resolve() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
resolveAndLog(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
resolveAndLog(String, int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
ResolveDependencies - Class in org.hkijena.jipipe.ui.ijupdater
 
ResolveDependencies(Window, FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
ResolveDependencies(Window, FilesCollection, boolean) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
ResolveVariableOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
ResolveVariableOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.ResolveVariableOperator
 
RESOURCE_BASE_PATH - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
 
RESOURCE_BASE_PATH - Static variable in class org.hkijena.jipipe.utils.ResourceUtils
 
ResourceUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils
Functions for resource access
ResourceUtils() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
 
ResourceUtils - Class in org.hkijena.jipipe.utils
Functions for resource access
ResourceUtils() - Constructor for class org.hkijena.jipipe.utils.ResourceUtils
 
restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup
Restores the backup to the input algorithm
restore() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
Restores the snapshot
restore(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
Restores the snapshot into the target algorithm
restore(JIPipeProjectWorkbench) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
restoreParameters(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot.AlgorithmBackup
Restores the parameter to a compatible foreign algorithm
restoreStandardTabs(boolean, boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
restrictInputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restrict the number of input slots
restrictInputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restricts the slot to specified data types
restrictInputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restricts the slot to specified data types
restrictOutputSlotCount(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restrict the number output slots
restrictOutputTo(Class<? extends JIPipeData>...) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restricts the slot to specified data types
restrictOutputTo(Collection<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Restricts the slot to specified data types
resultsTable(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
ResultsTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes
Data containing a ResultsTable
ResultsTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a new instance
ResultsTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a ResultsTableData from a map of column name to column data
ResultsTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a ResultsTableData from a list of columns.
ResultsTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Wraps a results table
ResultsTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a copy
ResultsTableData.Deserializer - Class in org.hkijena.jipipe.extensions.tables.datatypes
 
ResultsTableData.Index - Class in org.hkijena.jipipe.extensions.tables.datatypes
Points to a cell in the table
ResultsTableData.IntegratingColumnOperationEntry - Class in org.hkijena.jipipe.extensions.tables.datatypes
An entry for obtaining statistics/integrated values
ResultsTableData.Serializer - Class in org.hkijena.jipipe.extensions.tables.datatypes
 
ResultsTableDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Adapter between ResultsTableData and ResultsTable
ResultsTableDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImageJAdapter
 
ResultsTableDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
ResultsTableDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ResultsTableDataImporterUI
 
ResultsTableDataList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
ResultsTableDataList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList
Creates a new instance
ResultsTableDataList(ResultsTableDataList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ResultsTableDataList
Creates a copy
ResultsTableDataListCellRenderer - Class in org.hkijena.jipipe.ui.components
ResultsTableDataListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.ResultsTableDataListCellRenderer
Creates new instance
ResultsTableDataParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters
Editor for ResultsTableData
ResultsTableDataParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.ResultsTableDataParameterEditorUI
Creates new instance
ResultsTableDataPreview - Class in org.hkijena.jipipe.extensions.tables
 
ResultsTableDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.tables.ResultsTableDataPreview
Creates a new renderer
ResultsTableFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources
Imports ResultsTableData from a file
ResultsTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile
 
ResultsTableFromFile(ResultsTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile
Copies the algorithm
ResultsTableFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ResultsTableFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI
 
ResultsTableFromGUI(ResultsTableFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI
 
ResultsTableToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ResultsTableToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI
 
ResultsTableToGUI(ResultsTableToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI
 
rgbToChannels(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Convert a RGB image to a grayscale image where the RGB channels are split into individual planes
ROI_PROCESSOR_DESCRIPTION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
RoiCalculatorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
RoiCalculatorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
Instantiates a new node type.
RoiCalculatorAlgorithm(RoiCalculatorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
Instantiates a new node type.
ROIDataFromFile - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datasources
Loads ROI data from a file via IJ.openFile()
ROIDataFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile
 
ROIDataFromFile(ROIDataFromFile) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile
Copies the algorithm
ROIDataImageJAdapter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Adapter between RoiManager and ROIListData
ROIDataImageJAdapter() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImageJAdapter
 
ROIDataImporterUI - Class in org.hkijena.jipipe.extensions.imagejdatatypes.compat
Importer around ROIDataImageJAdapter
ROIDataImporterUI(ImageJDatatypeImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.compat.ROIDataImporterUI
 
ROIDataImportIntoImageOperation - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ROIDataImportIntoImageOperation() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
ROIDataPreview - Class in org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis
 
ROIDataPreview(JIPipeProjectWorkbench, JTable, JIPipeDataSlot, JIPipeExportedDataTable.Row) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataPreview
Creates a new renderer
ROIFromGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ROIFromGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI
 
ROIFromGUI(ROIFromGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI
 
ROIHandler - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Copy of ROIHandler to
ROIHandler() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
 
RoiListCellRenderer - Class in org.hkijena.jipipe.extensions.imagejdatatypes.viewer
 
RoiListCellRenderer() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.RoiListCellRenderer
 
ROIListData - Class in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes
Contains Roi
ROIListData() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates an empty set of ROI
ROIListData(List<Roi>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates a deep copy
ROIListData(RoiManager) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Initializes from a RoiManager
RoiNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
RoiNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
RoiOutline - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Available ways to address the shape of a Roi
RoiOverlapStatisticsVariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
RoiOverlapStatisticsVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource
 
RoiPropertiesToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
RoiPropertiesToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
RoiPropertiesToAnnotationsAlgorithm(RoiPropertiesToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
RoiStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
RoiStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
Instantiates a new node type.
RoiStatisticsAlgorithm(RoiStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
Instantiates a new node type.
ROIToGUI - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
Imports ImagePlusData from the GUI
ROIToGUI(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI
 
ROIToGUI(ROIToGUI) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI
 
RoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
RoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
Instantiates a new node type.
RoiToMaskAlgorithm(RoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
Instantiates a new node type.
RoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
RoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
Instantiates a new node type.
RoiToRGBAlgorithm(RoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
Instantiates a new node type.
RollingBallBackgroundEstimator2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
Wrapper around RankFilters
RollingBallBackgroundEstimator2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
Instantiates a new node type.
RollingBallBackgroundEstimator2DAlgorithm(RollingBallBackgroundEstimator2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
Instantiates a new node type.
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
Available background types
RollingBallBackgroundEstimator2DAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background
Available methods
rootPanel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
rotate(ImagePlus, double, boolean, Color, boolean, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Rotates the image by a specified amount of degrees to the right
rotateRight() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
rotateTabRuns(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout
 
RoundColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
RoundColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation
 
RoundedLineBorder - Class in org.hkijena.jipipe.installer.linux.ui.utils
Rounded line border that actually works https://stackoverflow.com/questions/52759203/rounded-lineborder-not-all-corners-are-rounded
RoundedLineBorder(Paint, int, int) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder
 
RoundedLineBorder(Paint, int, int, boolean) - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.RoundedLineBorder
 
RoundedLineBorder - Class in org.hkijena.jipipe.utils
Rounded line border that actually works https://stackoverflow.com/questions/52759203/rounded-lineborder-not-all-corners-are-rounded
RoundedLineBorder(Paint, int, int) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder
 
RoundedLineBorder(Paint, int, int, boolean) - Constructor for class org.hkijena.jipipe.utils.RoundedLineBorder
 
Row() - Constructor for class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
Creates new instance
row - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
RowIndexTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes
Generates numbers from 0 to row count
RowIndexTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
rowIsVirtual(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Returns whether a row is virtual (unloaded) or non-virtual (present in memory)
rowToFile - Variable in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
run() - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
run() - Method in class org.hkijena.jipipe.api.JIPipeRun
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Runs the workload
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
run() - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeDataSlots
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.OutputFolderDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageTypeConverter
 
run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
run() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataDefinition
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
run(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
run(Consumer<JIPipeRunnerStatus>, Supplier<Boolean>) - Method in interface org.hkijena.jipipe.installer.linux.api.JIPipeRunnable
Runs the runnable
run() - Method in class org.hkijena.jipipe.JIPipeGUICommand
 
run() - Method in class org.hkijena.jipipe.JIPipeRunAlgorithmCommand
 
run() - Method in class org.hkijena.jipipe.JIPipeRunCommand
 
run() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
run() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
run() - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
run() - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
run() - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
run() - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphCutNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCopyNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentCutNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.clipboard.GraphCompartmentPasteNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteCompartmentUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DeleteNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisablePassThroughNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableSaveOutputsNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.DisableVirtualOutputNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnablePassThroughNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableSaveOutputsNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.EnableVirtualOutputsNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentAsJsonNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportCompartmentToNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.ExportNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.GroupNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.InvertSelectionNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.IsolateNodesUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.JsonAlgorithmToGroupNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeContextActionWrapperUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
Runs the workload
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.OpenCacheBrowserInWindowUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
run(JIPipeGraphCanvasUI, Set<JIPipeNodeUI>) - Method in class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
run() - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
run() - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
run() - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
run() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
RunAndShowResultsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
RunAndShowResultsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.RunAndShowResultsNodeUIContextAction
 
runInDialog(JIPipeRunnable) - Static method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
Runs code on one data row
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
Runs code on one data row
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
Runs code on one data row
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Absolute
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AbsoluteDifference
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AdjacencyMatrixToTouchMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ApplyVectorField3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ArgMaximumZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryAnd
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryEdgeDetection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryFillHoles
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryNot
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryOr
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinarySubtract
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BinaryXOr
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CentroidsOfLabels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CloseIndexGapsInLabelMap
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineHorizontally
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CombineVertically
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ConcatenateStacks
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Convolve
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Copy
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectLabelEdges
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateBoxSliceBySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DilateSphereSliceBySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DistanceMap
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DivideImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DownsampleSliceBySliceHalfMedian
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Equal
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeBoxSliceBySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ErodeSphereSliceBySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnEdges
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Exponential
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExtendLabelingViaVoronoi
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateBinaryOverlapMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateDistanceMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateJaccardIndexMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImage
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchCountMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateTouchMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetJaccardIndex
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetMeanSquaredError
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GetSorensenDiceCoefficient
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientX
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientY
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GradientZ
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Greater
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqual
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Histogram
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Invert
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2JaccardIndex
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelCentroidsToPointList
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelledSpotsToPointList
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelSpots
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelVoronoiOctagon
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LaplaceDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LocalThreshold
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Logarithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mask
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskStackWithPlane
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfMaskedPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumXProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumYProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanClosestSpotDistance
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfMaskedPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSquaredError
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanXProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanYProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumDistanceOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfMaskedPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumXProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumYProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageStackWithScalars
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyStackWithPlane
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestDistances
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NClosestPoints
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NeighborsOfNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMaximumDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NonzeroMinimumDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqual
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OnlyzeroOverwriteMaximumDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointIndexListToMesh
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PointlistToLabelledSpots
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PowerImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullToResultsTable
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushResultsTable
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensities
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplacePixelsIfZero
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceBottom
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceLeft
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRight
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceTop
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateClockwise
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2RotateCounterClockwise
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SetNonZeroPixelsToPixelIndex
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ShortestDistances
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Smaller
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqual
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Sobel
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SorensenDiceCoefficient
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SpotsToPointList1
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SquaredDifference
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfMaskedPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationOfTouchingNeighbors
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StandardDeviationZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfBackgroundAndLabelledPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfImage
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2StatisticsOfLabelledPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImages
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumImageSliceBySlice
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumXProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumYProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SumZProjection
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdDefault
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdHuang
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIjIsoData
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIntermodes
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdIsoData
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdLi
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMaxEntropy
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMean
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinError
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMinimum
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdMoments
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdOtsu
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdPercentile
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdRenyiEntropy
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdShanbhag
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdTriangle
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ThresholdYen
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToAdjacencyMatrix
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TouchMatrixToMesh
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXy
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeXz
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TransposeYz
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2UndefinedToZero
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VarianceOfMaskedPixels
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiLabeling
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2VoronoiOctagon
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Watershed
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2WriteValuesToPositions
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportData
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractFileName
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizePaths
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.DistanceTransformWatershed2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusToGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableToGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIFromGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ROIToGUI
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.GetRoiImageAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MergeRoiListsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ResultsTableFromFile
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ROIDataFromFile
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeColumnsAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
runIteration(JIPipeMergingDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableRowsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.PathsToJIPipeProjectParametersAlgorithm
 
runIteration(JIPipeDataBatch, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
RunJIPipeProjectAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
Runs a JIPipe project
RunJIPipeProjectAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
RunJIPipeProjectAlgorithm(RunJIPipeProjectAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
runOnImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs a command on an ImageJ image
runOnImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs a command on a copy of an ImageJ image
runOnNewImage(ImagePlus, String, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs a command on a copy of an ImageJ image
runOnNewImage(ImagePlus, PlugIn, Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Runs a command on a copy of an ImageJ image
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
Runs a parameter set iteration
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
runParameterSet(JIPipeProgressInfo, List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Runs the pass through.
runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
runPassThrough(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
 
runProject(JIPipeProject, Path, int) - Static method in class org.hkijena.jipipe.JIPipe
Runs a project in the current thread.
runProject(JIPipeProject, JIPipeRunSettings) - Static method in class org.hkijena.jipipe.JIPipe
Runs a project in the current thread.
runRegistrationTask(JsonExtensionRegistrationTask) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Immediately runs a registration task.
runRegistrationTasks() - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Attempts to run registration tasks that have registered dependencies
RunSingleAlgorithmDialog - Class in org.hkijena.jipipe.ui.compat
RunSingleAlgorithmDialog(Context) - Constructor for class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
runTestBench(boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeSingleAlgorithmSelectionPanelUI
Activates and runs the quick run as automatically as possible.
RuntimeSettings - Class in org.hkijena.jipipe.extensions.settings
Settings related to how algorithms are executed
RuntimeSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.RuntimeSettings
Creates a new instance
RunUIWorkerFinishedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events
Generated when an JIPipeRunWorker finished its work
RunUIWorkerFinishedEvent(JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerFinishedEvent
 
RunUIWorkerFinishedEvent - Class in org.hkijena.jipipe.ui.running
Generated when an JIPipeRunWorker finished its work
RunUIWorkerFinishedEvent(JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerFinishedEvent
 
RunUIWorkerInterruptedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events
Generated when work of an JIPipeRunWorker is interrupted
RunUIWorkerInterruptedEvent(JIPipeRunWorker, Exception) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerInterruptedEvent
 
RunUIWorkerInterruptedEvent - Class in org.hkijena.jipipe.ui.running
Generated when work of an JIPipeRunWorker is interrupted
RunUIWorkerInterruptedEvent(JIPipeRunWorker, Exception) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerInterruptedEvent
 
RunUIWorkerProgressEvent - Class in org.hkijena.jipipe.installer.linux.ui.events
Generated when an JIPipeRunWorker reports progress
RunUIWorkerProgressEvent(JIPipeRunWorker, JIPipeRunnerStatus) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerProgressEvent
 
RunUIWorkerProgressEvent - Class in org.hkijena.jipipe.ui.running
Generated when an JIPipeRunWorker reports progress
RunUIWorkerProgressEvent(JIPipeRunWorker, JIPipeProgressInfo.StatusUpdatedEvent) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerProgressEvent
 
RunUIWorkerStartedEvent - Class in org.hkijena.jipipe.installer.linux.ui.events
Generated when an JIPipeRunWorker was started
RunUIWorkerStartedEvent(JIPipeRunnable, JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.installer.linux.ui.events.RunUIWorkerStartedEvent
 
RunUIWorkerStartedEvent - Class in org.hkijena.jipipe.ui.running
Generated when an JIPipeRunWorker was started
RunUIWorkerStartedEvent(JIPipeRunnable, JIPipeRunWorker) - Constructor for class org.hkijena.jipipe.ui.running.RunUIWorkerStartedEvent
 

S

save(Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Saves the data to the storage path
save(Path) - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Saves the settings to the specified file
save() - Method in class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry
Saves the settings to the default settings file
saveAsCSV(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Saves the table to CSV
saveAsCSV(Path) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Saves the table as CSV
saveAsJson(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Saves the table to JSON
saveDirectory(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a directory
saveDirectory(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a directory
saveFile(Component, String, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a file
saveFile(Component, String, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a file
savePath(Component, String, String) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Lets the user choose a file or directory
savePath(Component, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Lets the user choose a file or directory
saveProject(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject
Saves the project
saveProject(Path) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Saves the extension
saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
Saves the project
saveProjectAs(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
Saves the project
saveROIs(MetadataStore, ROIListData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIHandler
Save ROIs in the ROI manager to the given MetadataStore.
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compartments.datatypes.JIPipeCompartmentOutputData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.data.JIPipeData
Saves the data to a folder
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.strings.StringData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.DoubleArrayTableColumn
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.RowIndexTableColumn
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
saveTo(Path, String, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.JIPipeOutputData
 
saveToJson(Path) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Saves the exported compartment to JSON
scaleHSV(Color, float, float, float) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Applies scaling in HSV space
ScatterXYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
ScatterXYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData
Creates a new instance
ScatterXYPlotData(ScatterXYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.ScatterXYPlotData
Creates a copy
schedule(Runnable) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
Schedules a runnable
scheduleBatches(List<Runnable>, int) - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
Schedules multiple tasks at once, split into batches.
scheduleRegister(JIPipeNodeRegistrationTask) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Schedules registration after all dependencies of the registration task are satisfied
scheduleRegisterJsonExtension(Path, JsonNode) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Schedules the registration of an extension Invalid JSON data is skipped
scheduleRun() - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
ScreenImage - Class in org.hkijena.jipipe.utils
Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.
ScreenImage() - Constructor for class org.hkijena.jipipe.utils.ScreenImage
 
ScreenImageSVG - Class in org.hkijena.jipipe.utils
Convenience class to create and optionally save to a file a BufferedImage of an area on the screen.
ScreenImageSVG() - Constructor for class org.hkijena.jipipe.utils.ScreenImageSVG
 
ScreenshotWholeGraphToolPNG - Class in org.hkijena.jipipe.extensions.tools
 
ScreenshotWholeGraphToolPNG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolPNG
Creates a new instance
ScreenshotWholeGraphToolSVG - Class in org.hkijena.jipipe.extensions.tools
 
ScreenshotWholeGraphToolSVG(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.ScreenshotWholeGraphToolSVG
Creates a new instance
ScriptParameter - Class in org.hkijena.jipipe.extensions.parameters.scripts
A parameter that contains some kind of script
ScriptParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
Creates a new empty code
ScriptParameter(ScriptParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
Copies the code
ScriptParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.scripts
Parameter editor for ScriptParameter
ScriptParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameterEditorUI
 
scrollToAlgorithm(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Scrolls to the specified algorithm UI
seal() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Seals input and output
sealInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Seals input
sealOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Seals output
SearchBox<T> - Class in org.hkijena.jipipe.ui.components
A JComboBox that implements a search behavior
SearchBox() - Constructor for class org.hkijena.jipipe.ui.components.SearchBox
Creates a new instance
SearchBox.SelectedEvent<T> - Class in org.hkijena.jipipe.ui.components
 
SearchTextField - Class in org.hkijena.jipipe.ui.components
A JXTextField designed for searching
SearchTextField() - Constructor for class org.hkijena.jipipe.ui.components.SearchTextField
Creates a new instance
SearchTextFieldTableRowFilter - Class in org.hkijena.jipipe.ui.components
Filters string entries via a SearchTextField
SearchTextFieldTableRowFilter(SearchTextField) - Constructor for class org.hkijena.jipipe.ui.components.SearchTextFieldTableRowFilter
 
SECONDARY1 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
SECONDARY1 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
SECONDARY1 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
SECONDARY2 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
SECONDARY2 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
SECONDARY2 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
SECONDARY3 - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
SECONDARY3 - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
SECONDARY3 - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
selectAll() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
SelectAllNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
SelectAllNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAllNodeUIContextAction
 
SelectAndMoveNodeHereNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
SelectAndMoveNodeHereNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.SelectAndMoveNodeHereNodeUIContextAction
 
selectColor - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
selectDataSlot(JIPipeProjectCacheState, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheTree
Selects a node by state and slot
SelectedDataTypesChangedEvent(JIPipeDataTypePicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.SelectedDataTypesChangedEvent
 
SelectedEvent(SearchBox<T>, T) - Constructor for class org.hkijena.jipipe.ui.components.SearchBox.SelectedEvent
 
SelectedTraitsChangedEvent(JIPipeNodeInfoPicker) - Constructor for class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.SelectedTraitsChangedEvent
 
selectEnd() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
selectHighlight - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
selectItem(T) - Method in class org.hkijena.jipipe.ui.compendium.JIPipeCompendiumUI
Displays the documentation of the specified algorithm
selectMulti(Component, String, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Generic open method for multiple paths.
selectMulti(Component, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Generic open method for multiple paths.
selectNewestState() - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheTree
 
selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Selects only the specified algorithm
selectOnly(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Selects only the specified algorithm
selectSingle(Component, String, String, PathEditor.IOMode, PathEditor.PathMode, FileNameExtensionFilter...) - Static method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Generic open/save method for single paths
selectSingle(Component, String, PathEditor.IOMode, PathEditor.PathMode) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.FileChooserSettings
Generic open/save method for single paths
selectSingletonTab(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Re-opens or selects a singleton tab
sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.MissingUpdateSiteResolver
 
sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWorkbench
Sends a text to the status bar
sendStatusBarText(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Sends a text to the status bar
sendStatusBarText(String) - Method in interface org.hkijena.jipipe.ui.JIPipeWorkbench
Sends a text to the status bar
SEPARATOR - Static variable in interface org.hkijena.jipipe.ui.grapheditor.contextmenu.NodeUIContextAction
Indicates that a separator is created
serialize(JIPipeExportedCompartment, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer
 
serialize(SingleImageJAlgorithmRun, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer
 
serialize(JIPipeDataInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer
 
serialize(JIPipeDataSlotInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer
 
serialize(JIPipeSlotConfiguration, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer
 
serialize(NodeGroupContents, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer
 
serialize(JIPipeProject, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.JIPipeProject.Serializer
 
serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer
 
serialize(JIPipeEmptyNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer
 
serialize(JIPipeGraph, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer
 
serialize(JIPipeGraphNode, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer
 
serialize(JIPipeJavaNodeInfo, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer
 
serialize(ParametersData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer
 
serialize(ListParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer
 
serialize(Color, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorSerializer
 
serialize(DynamicCategoryEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer
 
serialize(FunctionParameter<?, ?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer
 
serialize(IntegerRange, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer
 
serialize(Matrix2D<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer
 
serialize(OptionalParameter<?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer
 
serialize(PairParameter<?, ?>, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Serializer
 
serialize(DynamicStringEnumParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer
 
serialize(PasswordParameter, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Serializer
 
serialize(JIPipeAlgorithmIconRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer
 
serialize(JIPipeDataInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer
 
serialize(JIPipeNodeInfoRef, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer
 
serialize(Rectangle, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.roi.RectangleSerializer
 
serialize(ParameterTable, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer
 
serialize(PlotData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer
 
serialize(PlotDataSeries, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Serializer
 
serialize(ResultsTableData, JsonGenerator, SerializerProvider) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Serializer
 
serializeParameter(Map.Entry<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer
Returns true if the parameter should be serialized
serializeParametersToJson(JIPipeParameterCollection, JsonGenerator) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Serializes parameters to JSON using a generator
serializeParametersToJson(JIPipeParameterCollection, JsonGenerator, Predicate<Map.Entry<String, JIPipeParameterAccess>>) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Serializes parameters to JSON using a generator
Serializer() - Constructor for class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataInfo.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeEmptyNodeInfo.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraph.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeJavaNodeInfo.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.ListParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.enums.DynamicCategoryEnumParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.DynamicStringEnumParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotData.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries.Serializer
 
Serializer() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Serializer
 
set(T) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceAccess
 
set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
 
set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
set(T) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Sets the parameter value
set(T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
set(U) - Method in class org.hkijena.jipipe.extensions.parameters.collections.ListParameterItemParameterAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterInputAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterOutputAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameterParameterAccess
 
set(U) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameterContentAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterKeyAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameterValueAccess
 
set(T) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTableCellAccess
 
setAcceptedDataType(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Sets the accepted slot type Please note that this method can cause issues when running the graph
setAcceptedDataTypeId(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Sets the accepted datatype ID
setActions(List<JIPipeParameterTree.ContextAction>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setAddableAlgorithms(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
setAddAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
 
setAddContextActionsToContextMenu(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setAddDataToString(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
setAddFileExtension(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
setAdditionalMetadata(Map<String, Object>) - Method in class org.hkijena.jipipe.api.JIPipeProject
 
setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setAddKeyValuePairsAsAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setAddNameToTable(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setAffiliations(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
setAfterSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
setAlgorithmInstance(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithmSlotConfiguration
 
setAlgorithmsWithExternalInput(Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
setAllowCache(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
setAllowedInputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
setAllowedOutputSlotTypes(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
setAllowedTypes(Set<Class<?>>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Sets allowed parameter types
setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
 
setAllowedValues(List<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
setAllowInheritedOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Enables/Disables if output slots can inherit from input slots
setAllowSkipAlgorithmsWithoutInput(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
setAllowUserModification(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Enabled/disables if modification by users is allowed
setAllSlotsVirtual(boolean, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets/unsets virtual mode for all output slots
setAlpha(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
setAnchor(TableToRectangularROIAlgorithm.Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
setAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setAngle(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
setAnnotateSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
setAnnotateWithChannelIndex(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setAnnotateWithSlotName(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setAnnotationBoundingHeight(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationBoundingWidth(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationC(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setAnnotationC(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationCLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setAnnotationColumnChannelIndex(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setAnnotationColumnSlotName(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setAnnotationExpression(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveAnnotationAlgorithm
 
setAnnotationExpression(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
 
setAnnotationMap(Map<Class<? extends Annotation>, Annotation>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
setAnnotationMergeStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveNAAnnotationColumnsAlgorithm
 
setAnnotationNameFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
 
setAnnotationPrefix(String) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.AddAnnotationColumnsAlgorithm
 
setAnnotations(List<JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
Sets annotations
setAnnotations(Map<String, JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
 
setAnnotations(Map<String, JIPipeAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
 
setAnnotations(NamedAnnotationGeneratorExpression.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
setAnnotationsFromPython(PyDictionary, Map<String, JIPipeAnnotation>) - Static method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
Sets annotations from a Python dictionary
setAnnotationT(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setAnnotationT(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationTLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setAnnotationType(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
setAnnotationType(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
setAnnotationX(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setAnnotationX(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationXLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setAnnotationY(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setAnnotationY(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationYLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setAnnotationZ(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setAnnotationZ(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setAnnotationZLocation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setAppend(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
setAppendDataTypeAsMetadata(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setAppendDataTypeMetadataKey(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setAppendDataTypeUsesRealDataType(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setAppendDirectoryNameToTarget(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
setApplyDespeckle(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setApplyFirstCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setApplyGaussian(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setApplyInternalGradient(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setApplyMerging(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
setApplyPerChannel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
setApplyPerFrame(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
 
setApplyPerSlice(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
setApplySecondCLAHE(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
setApplyToAllPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
setArtifactPaint(Paint) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the paint used to color the median and average markers and sends a RendererChangeEvent to all registered listeners.
setAskOnDeleteCompartment(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setAskOnDeleteNode(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setAskOnDeleteParameter(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setAssembleTemplates(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setAssembleTemplatesBackground(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setAssembleTemplatesOutput(OptionalDataInfoRefParameter) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setAttachOnlyNonDefaultParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
setAttachParameterAnnotations(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
setAuthors(JIPipeAuthorMetadata.List) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the authors
setAutoCalibrateAfterPulling(boolean) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
setAutoClamp(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
setAutoLayout(GraphAutoLayout) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setAutoSaveDelay(int) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
setAutoSaveLastDisplay(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
setAutoSaveLastImporter(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
setAutoScale(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setAutoScale(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setAvailableParameters(Map<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Sets the list of available parameters
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
setBackgroundColor(Color) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setBackgroundImage(BufferedImage) - Method in class org.hkijena.jipipe.ui.components.BackgroundPanel
 
setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setBandwidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setBaseName(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
 
setBaseName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource
 
setBinAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setBinAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setBins(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
setBins(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setBioFormatsCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
setBitDepthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setBlackBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setBlackBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
 
setBlockRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
 
setBlurSigmaX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur2d
 
setBlurSigmaY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
setBlurSigmaZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GaussianBlur3d
 
setBorderColor(Color) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
setBorderColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
setBorderDefinition(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
 
setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
setBorderWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setBottom(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setC(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
setCalibrationMode(ImageJCalibrationMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
setCancel(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.ParameterAddingEvent
 
setCanvas(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeCompartmentGraphDragAndDropBehavior
 
setCanvas(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentDragAndDropBehavior
 
setCanvas(JIPipeGraphCanvasUI) - Method in interface org.hkijena.jipipe.ui.grapheditor.JIPipeGraphDragAndDropBehavior
Sets the canvas that contains the algorithm nodes
setCategory(JIPipeNodeTypeCategory) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the category
setCategoryAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
setCategoryAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
setCategoryParameter(DynamicCategoryEnumParameter) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
setCenterX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
setCenterY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsOnSurface
 
setCenterZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsSubSurface
 
setChangedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
setChannelName(String) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
setChannelReordering(IntegerAndIntegerPairParameter.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
setChannelSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setChildren(BiMap<String, JIPipeParameterTree.Node>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setCitation(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the citation
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
setCode(ImageJMacro) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
setCode(String) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
setCode(PythonScript) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
setCollapsed(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.scripts.ScriptParameter
 
setCollection(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm
 
setColor(Color) - Method in class org.hkijena.jipipe.ui.components.MonochromeColorIcon
 
setColorMap(ColorMap) - Method in class org.hkijena.jipipe.extensions.parameters.colors.ColorMapIcon
 
setColorMap(ColorMap) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setColorMode(OMEColorMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setColorMode(OMEColorMode) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setColumn(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
 
setColumn(String, TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Sets a column from another table column.
setColumn(String, TableColumn, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Sets a column from another table column.
setColumnFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
setColumnFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
 
setColumnHeight(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setColumnName(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GenerateParametricImageFromResultsTableColumn
 
setColumnRadius(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
setColumns(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setColumns(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
setColumns(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setColumns(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
setColumns(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
setColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
 
setColumnToValue(String, Object) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Sets a column to a value.
setColumnWidth(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setColumnX1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
setColumnX1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setColumnX2(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setColumnY1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
 
setColumnY1(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setColumnY2(TableColumnSourceExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
setCompareAbsolute(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setCompartment(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the compartment the algorithm is location in
setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
setCompartmentInstance(JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
setComponentNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setCompression(OMETIFFCompression) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setConcatenate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setConcatenate(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setConfirmIcon(Icon) - Method in class org.hkijena.jipipe.ui.components.ConfirmingButton
 
setContent(List<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
setContent(T) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
setContents(NodeGroupContents) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
setContentX(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setContentXY(int, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setContentY(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setContext(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
setContext(Context) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
setContextActions(List<NodeUIContextAction>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setConverter(JIPipeDataConverter) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge
 
setCorrectCorners(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
setCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
setCountAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setCounterAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
setCreateComposite(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
setCreateLauncher(boolean) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
setCrop(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setCrop(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setCropC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
setCropRegions(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setCropRegions(RectangleList) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setCropT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
setCropXY(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
setCropZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
setCurrentConnectionDragSource(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setCurrentConnectionDragTarget(JIPipeDataSlotUI) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setCurrentHighlightedForDisconnect(JIPipeDataSlotUI, Set<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setCurrentlySelectedValue(Object) - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionContentListUI
Sets the selected value * * @param currentlySelectedValue The value
setCustomColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
setCustomColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
setCustomDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
setCustomDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets a custom description.
setCustomMax(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
setCustomMin(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
setCustomName(String) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
 
setCustomName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Overrides the name displayed in the UI
setCustomName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
setCustomName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets a custom name.
setDarkBackground(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Sets the data row of a given slot.
setData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Sets the input slot to only one row
setDatasetId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
setDatasetIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMERODatasetReferenceDataSource
 
setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
setDataSetMatching(JIPipeColumnGrouping) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
setDatasetNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setDatasetNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setDatasetNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setDataToString(Function<T, String>) - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
setDeduplicate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setDefaultPassword(PasswordParameter) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
setDefaultRunThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
Sets the number of threads
setDefaultServer(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
setDefaultSortOrder(SortOrder) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
setDefaultTestBenchThreads(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
Sets the number of threads for test bench
setDefaultUserName(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
setDefaultViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setDeltaAngle(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setDependencyAlgorithmIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
setDependencyCitations(StringList) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
setDependencyDatatypeClasses(Set<Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
Sets dependency data classes.
setDependencyDatatypeIds(Set<String>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
setDependencyId(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
Sets the ID
setDependencyVersion(String) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
Sets the version
setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge
 
setDepth(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setDescription(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
setDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the description
setDescription(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the description
setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the description
setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Sets the description
setDescription(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setDescription(String) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel.GroupHeaderPanel
Sets the description and sets the visibility
setDescription(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
setDescription(String) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
Sets the description and sets the visibility
setDespeckleIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
 
setDestination_x(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste2d
 
setDestination_y(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
setDestination_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Paste3d
 
setDevice(int) - Method in class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
 
setDialog(JDialog) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
 
setDilationErodeSteps(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
setDilationIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setDimension(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndCoordinate
 
setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setDimensionOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setDiscardExistingAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
setDisplayedParameters(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
setDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
 
setDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
 
setDocumentation(JIPipeDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setDoScaling(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setDoubleValue(double) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
setDragAndDropBehavior(JIPipeGraphDragAndDropBehavior) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
setDrawFilledOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setDrawLabel(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
setDrawOutline(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setDrawOutsideEdges(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setDrawOver(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.RemoveLUTAlgorithm
 
setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
setDuplicateImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.DisplayRangeCalibrationAlgorithm
 
setEigenvalueSelection(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setEigenvalueSelection2D(EigenvalueSelection2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
setElement(Strel.Shape) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
setEmail(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROSettings
 
setEnableAutoSave(boolean) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
setEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
setEnabled(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
setEnabled(boolean) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
setEnableLayoutHelper(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setEqualsString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setErosionIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setErroneousNodes(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
setErroneousPlugins(Set<PluginInfo<JIPipeJavaExtension>>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
setError(Component) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setExactValue(int) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
setExcludeEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setExcludeOnEdges(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setExcludeSelected(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setExpandCanvas(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
setExpectedNumberOfObjects(int) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setExponent(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Power
 
setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
 
setExportedParameters(GraphNodeParameters) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
setExporterSettings(OMEExporterSettings) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
setExportHeight(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setExportWidth(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setExpression(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
 
setExpression(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
setExpression(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.utils.ExpressionTesterUI
 
setExpressionList(ExpressionTableColumnGeneratorProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ApplyExpressionPerRowAlgorithm
 
setExtensionFilters(List<FileNameExtensionFilter>) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
setExtensionFilters(String[]) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
setExtractRois(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setExtractRois(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setFactor(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
 
setFactor(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
 
setFactor(double) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
setFactor1(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImagesWeighted
 
setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
 
setFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale2d
 
setFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
setFactorZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Scale3d
 
setFastMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the field class
setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
For internal usage only
setFieldClass(Class<?>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setFieldClassInfoId(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
setFileName(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
Sets the file name
setFileNameAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
setFileNames(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
Sets the file names
setFiles(Iterable<FileObject>) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
setFiles(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
setFilesCollection(FilesCollection) - Method in class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI
 
setFillBox(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the flag that controls whether or not the box is filled and sends a RendererChangeEvent to all registered listeners.
setFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setFillColor(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setFillColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorIcon
 
setFillColorAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setFillMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
setFilter(TableCellValueQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
setFilterExpression(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
setFilters(PathQueryExpression) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
setFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
setFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
 
setFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RemoveColumnAlgorithm
 
setFirstColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
setFirstIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setFirstName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
setFlipMode(TransformFlip2DAlgorithm.FlipMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
 
setFlipTemplateHorizontally(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setFlipTemplateVertically(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setFloatingPointOutput(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
setFolderPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
Sets the folder path
setFolderPaths(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
Sets the folder path
setFontSize(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setFontSize(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setForceReflection(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
setForegroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setForegroundColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setFramesSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setFullPath(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
setFunction(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
setFunctions(StringPatternExtractionFunction.List) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ExtractAndReplaceAnnotation
 
setGaussianSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
setGaussSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setGenerateCachePreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
Sets generated annotation type
setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.GenerateUniqueAnnotation
Sets generated annotation type
setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
Sets generated annotation type
setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
Sets the generated annotation type
setGeneratedAnnotation(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExplodeRoiAlgorithm
 
setGeneratedAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
 
setGeneratedImageType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setGeneratedImageType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
setGeneratedRows(int) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
setGeneratedType(ColumnContentType) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
 
setGenerateResultPreviews(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
setGeneratorType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
 
setGetter(Supplier<Object>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the getter
setGetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setGradientRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
 
setGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the graph this algorithm is location in.
setGraphEditCursor(Point) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setGridColor(Color) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setHasParameterSlot(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
setHeight(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
setHeight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setHeightAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setHeightTolerance(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setHidden(boolean) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
 
setHistogramType(HistogramPlotData.HistogramType_) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setHyperstackReassignments(HyperstackDimensionPairParameter.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ReorderDimensionsAlgorithm
 
setIcon(JIPipeAlgorithmIconRef) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setIcon(ColorIcon) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
setIcon(ImageIcon) - Method in class org.hkijena.jipipe.ui.components.ZoomIcon
 
setIconName(String) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef
 
setId(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setId(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the ID
setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
Sets the ID of the selected entry
setId(String) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
Sets the ID of the selected entry
setId(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Sets the ID
setIgnoreC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setIgnoreCustomParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
setIgnoreImportedDataAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
setIgnoreImportedDataAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
setIgnoreInputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImportData
 
setIgnoreInputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.ImportJIPipeSlotFolderAlgorithm
 
setIgnoreInvalidSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setIgnoreMissingAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
setIgnoreMissingChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setIgnoreMissingColumns(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
setIgnoreMissingMetadata(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setIgnoreMissingSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
setIgnoreReflectionParameters(boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
 
setIgnoreT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setIgnoreValidation(boolean) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
setIgnoreZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractImageInRoiAlgorithm
 
setImage(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
setImage(BufferedImage) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
setImageArea(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setImageFilters(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
setImageFiltersOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
setImageId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
setImageIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROImageReferenceDataSource
 
setImageJUpdateSiteDependencies(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
setImageJUpdateSites(List<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
 
setImageNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setImageNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setImageTypeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setIn(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
 
setIncludeHoles(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setIndex(int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
Sets the location
setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2LabelToMask
 
setIndex(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaskLabel
 
setIndexAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setIndexIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeGraphRunner
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeRun
 
setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the JIPipeNodeInfo that describes this algorithm.
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBench
 
setInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
setInfo(JIPipeNodeInfo) - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToOutputExporterRun
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.ijupdater.RefreshRepositoryRun
 
setInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
 
setInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
setInheritanceConversionsFromRaw(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
setInput(I) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
setInputIsEDM(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setInputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Seals/Unseals input slots
setInputSlots(List<JIPipeInputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the input slots
setInstallationPath(Path) - Method in class org.hkijena.jipipe.installer.linux.api.InstallerRun
 
setInstanceGenerator(Function<JIPipeDynamicParameterCollection.UserParameterDefinition, JIPipeMutableParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
setInternalGradientRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
setInternalPath(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Sets the internal path
setInternalStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the internal storage path relative to the output folder.
setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
setInterpolationMethod(InterpolationMethod) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
setInvert(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
setInvertThreshold(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
setIoMode(PathEditor.IOMode) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
setIoMode(PathEditor.IOMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
setItemCount(int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
setItemMargin(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the item margin and sends a RendererChangeEvent to all registered listeners.
setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumOctagon
 
setIterations(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumOctagon
 
setIterations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
setJIPipe(JIPipe) - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
setKeepAnnotationColumns(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertAnnotationTableToAnnotatedTables
 
setKeepSameChannelCount(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
setKernelFunction(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
setKernelScript(OpenCLKernelScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
For internal use only
setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setKey(K) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
setKey(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
setKey(String) - Method in class org.hkijena.jipipe.utils.MacroFlag
 
setKey(String) - Method in class org.hkijena.jipipe.utils.MacroSetting
 
setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setKeyValuePairFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setLabel(String) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestbenchSnapshot
 
setLabelFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie2DPlotData
 
setLabelFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.Pie3DPlotData
 
setLabels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setLabels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setLargeVirtualDataTypesByDefault(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
setLastDataDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
setLastDirectoryBy(String, Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
Sets the last directory according to the key
setLastIndex(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setLastName(String) - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
setLastParametersDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
setLastProjectsDirectory(Path) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
setLastSaves(PathList) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
setLayoutHelperEnabled(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
Enables or disables the layout helper
setLeft(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setLegendFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setLicense(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the license
setLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setLineColor(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setLineColorAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLineMeasurement(MeasurementColumn) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToMaskAlgorithm
 
setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineCategoryPlotData
 
setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineStatisticalCategoryPlotData
 
setLineThickness(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.LineXYPlotData
 
setLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setLineWidth(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setLineWidthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
setLoadFromCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setLocal(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setLocalRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setLocationCAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLocations(Map<String, Map<String, Point>>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
 
setLocationTAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLocationWithin(String, Point, String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the UI location of this algorithm within the specified compartment
setLocationXAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLocationYAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLocationZAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setLogarithmic(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
setLogicalOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
setLogLimit(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
SetLUTFromColorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
 
SetLUTFromColorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
SetLUTFromColorAlgorithm(SetLUTFromColorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
setMaintainer(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
setMapFillColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ColorRoiByStatisticsAlgorithm
 
setMapLineColor(OptionalColorMapParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
setMatrix(Matrix2DFloat) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
 
setMatrix(Matrix2DFloat) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
 
setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
 
setMax(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
 
setMax_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
 
setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
 
setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
 
setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
 
setMax_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
setMaximizeWindows(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setMaximumBarWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the maximum bar width, which is specified as a percentage of the available space for all bars, and sends a RendererChangeEvent to all registered listeners.
setMaximumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
setMaximumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
setMaxInputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Sets maximum number of input slots
setMaxIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
setMaxNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setMaxOutputSlots(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Sets maximum number of output slots
setMaxParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setMaxParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
setMaxRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setMaxSlope(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
setMaxThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
setMaxThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
setMeanVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the flag that controls whether or not the mean indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.
setMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
setMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiStatisticsAlgorithm
 
setMedianVisible(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the flag that controls whether or not the median indicator is drawn for each item, and sends a RendererChangeEvent to all registered listeners.
setMenuPath(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setMenuPath(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the menu path.
setMenuPathList(StringList) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setMergedColumns(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Sets the metadata
setMetadata(JIPipeProjectMetadata) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Sets metadata
setMetadata(JIPipeMetadata) - Method in class org.hkijena.jipipe.JIPipeMutableDependency
Sets the metadata
setMetadataFrom(JIPipeGraphEdge) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
 
setMetadataKeyFilter(StringQueryExpression) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setMetadataValueLengthLimit(int) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setMethod(ZProjectorAlgorithm.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
setMethod(AutoThresholder.Method) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
setMimeType(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor
 
setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesOutOfRange
 
setMin(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExcludeLabelsWithValuesWithinRange
 
setMin_display_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DepthColorProjection
 
setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumZProjectionBounded
 
setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanZProjectionBounded
 
setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionBounded
 
setMin_z(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
setMinimumGreyValue(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
setMinimumScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
setMinIntensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
setMinNumCircles(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setMinParticleCircularity(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setMinParticleSize(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
setMinRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setMinScore(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
setMinThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
setMinThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
setMissingImageJSites(Set<JIPipeImageJUpdateSiteDependency>) - Method in class org.hkijena.jipipe.JIPipeRegistryIssues
 
setMissingString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setMode(RemoveOutliersFilter2DAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
setMode(TableToRectangularROIAlgorithm.Mode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
 
setMode(StringPatternExtraction.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
setMode(StringOrDouble.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
setMode(JIPipeDataTypePicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
setMode(JIPipeNodeInfoPicker.Mode) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
setModel(ComboBoxModel<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
setMultiChannelMode(HistogramGenerator.MultiChannelMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
setMultiObjectMaximumBoundingBoxOverlap(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setMultiObjectScoreThreshold(double) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
setName(String) - Method in class org.hkijena.jipipe.api.grouping.JsonNodeInfo
 
setName(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
 
setName(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the name
setName(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the name
setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the name
setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Sets the name
setName(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setName(String) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable.ParameterColumn
 
setName(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
 
setName(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
setName(String) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
 
setNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setNativeValue(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
Sets the values from native values
setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
setNeedsToExist(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
setNeighborhood(Neighborhood2D) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setNeverAskOnClosingTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorMapParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.colors.OptionalColorParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
Adds a new instance of the content class Override this method for types that cannot be default-constructed
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalBooleanParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalByteParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalDoubleParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalFloatParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalIntegerParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalLongParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalPathParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalShortParameter
 
setNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.primitives.OptionalStringParameter
 
setNewInstanceGenerator(Supplier<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
 
setNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
setnodeClass(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the algorithm class
setNodeId(String) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
setNodeInfo(JIPipeNodeInfoRef) - Method in class org.hkijena.jipipe.extensions.multiparameters.algorithms.MultiParameterAlgorithm
 
setNoLUT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setNormalize(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNClosestPoints
 
setNPoints(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AverageDistanceOfNFarOffPoints
 
setNumberOfBins(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
setNumScales(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
setNumSlices(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ImageToStack
 
setNumThreads(int) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
setNumThreads(int) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setNumThreads(int) - Method in class org.hkijena.jipipe.ui.compat.RunSingleAlgorithmDialog
 
setOffset(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReduceStack
 
setOnlyActiveImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ImagePlusFromGUI
 
setOnlyFirst(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiPropertiesToAnnotationsAlgorithm
 
setOpaque(boolean) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
setOpaque(boolean) - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
setOpenAllSeries(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setOpenTabs(List<String>) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
setOperation(ImageCalculator2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
setOperation(Morphology.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
setOperation(MorphologyBinary2DAlgorithm.Operation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
setOperation(LogicalOperation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
setOptionPanelContent(Component) - Method in class org.hkijena.jipipe.ui.ijupdater.ManagerUI
 
setOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setOrder(int) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExtractParent
 
setOriginalBorderSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
setOriginalSize(int) - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
setOut(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ReplaceIntensity
 
setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.OutlineRoiAlgorithm
 
setOutline(RoiOutline) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RemoveBorderRoisAlgorithm
 
setOutput(O) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
setOutputDimension(HyperstackDimension) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setOutputDimension(HyperstackDimension) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
setOutputDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
setOutputFiles(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
setOutputFolders(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
setOutputNode(JIPipeCompartmentOutput) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
Sets the compartment output.
setOutputNonExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
setOutputOverlaps(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
setOutputPath(Path) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
Sets the output path
setOutputPath(Path) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setOutputRoi(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
setOutputSealed(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Seals/Unseals output slots
setOutputSlots(List<JIPipeOutputSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMutableNodeInfo
Sets the output slots
setOutputType(LocalMaxima2DAlgorithm.OutputType) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setOutsideColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setOverlapFilter(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
setOverlapFilter(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setOverlapFilterMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterROIByOverlapAlgorithm
 
setOverlapFilterMeasurements(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setOverrideFillColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setOverrideLineColor(OptionalColorParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiToRGBAlgorithm
 
setOverrideLineWidth(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setOverrideReferenceImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
setPadded(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
setParallelizationEnabled(boolean) - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm
User-defined parameter to control if parallelization is enabled
setParallelizationEnabled(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
setParameter(JIPipeParameterCollection, String, Object) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Sets a parameter of a JIPipeParameterCollection and triggers the associated events
setParameter(P) - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
setParameter(Object, boolean) - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
Sets the parameter value.
setParameterAnnotationsPrefix(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
setParameterAnnotationsUseInternalNames(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm.ParameterSlotAlgorithmSettings
 
setParameterData(Map<String, Object>) - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
setParameterHolder(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
For internal usage only
setParameterReferenceGroups(List<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameters
 
setParameters(String) - Method in class org.hkijena.jipipe.api.compat.ImageJDatatypeImporter
Sets arbitrary string data that can be used by the adapter for the conversion
setParameters(BiMap<String, JIPipeParameterAccess>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setParameters(int, int, int, int, int, double, int, double, int, int, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
Import values from GUI class before starting the analysis thread
setParameterTable(ParameterTable) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.ParametersDataTableDefinition
 
setParent(NodeGroup) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
 
setParent(JIPipeGraphNode) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters
 
setParent(Component) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
setParentPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RelativizeByParameter
Sets the subfolder
setPassThrough(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
 
setPassword(PasswordParameter) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
setPassword(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.PasswordParameter
 
setPath(String) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReference
 
setPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
Sets the file name
setPath(String) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
setPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
setPath(Path) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
setPath(Path) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
setPathMode(PathEditor.PathMode) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.PathEditor
 
setPathMode(PathEditor.PathMode) - Method in class org.hkijena.jipipe.ui.components.PathEditor
 
setPathName(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.RenameByString
Sets the subfolder
setPaths(PathList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
Sets the folder path
setPercentile(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
 
setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setPersistence(JIPipeParameterPersistence) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setPlaneIndex(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CopySlice
 
setPlaneNumberAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.extensions.plots.PlotGeneratorAlgorithm
 
setPlotType(JIPipeDataInfoRef) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotBuilderUI
 
setPositionC(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setPositionC(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setPositionT(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setPositionT(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setPositionX(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setPositionX(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setPositionY(OptionalDoubleParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setPositionY(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setPositionZ(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setPositionZ(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ImageRoiProcessorAlgorithm
 
setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
 
setPreferAssociatedImage(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
 
setPrefix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
setPreprocessingScript(PythonScript) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
setPreSmoothing(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setPreventUpdateSlots(boolean) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
setPreviewHeight(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
setPreviewSize(int) - Method in class org.hkijena.jipipe.extensions.settings.GeneralDataSettings
 
setPreviewWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.misc.DataToPreviewAlgorithm
 
setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the priority
setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setPriority(double) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setProcessorParameters(ConvertingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ConvertColumnsAlgorithm
 
setProcessorParameters(IntegratingTableColumnProcessorParameterList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.IntegrateColumnsAlgorithm
 
setProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
setProgress(int, int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusResultImportRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageResultImportRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerStackExporterRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerVideoExporterRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
setProgressInfo(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
setProject(JIPipeProject) - Method in class org.hkijena.jipipe.api.compartments.algorithms.JIPipeProjectCompartment
Sets the project.
setProject(JIPipeProject) - Method in class org.hkijena.jipipe.ui.settings.JIPipeProjectInfoParameters
 
setProjectAllHyperstackTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
setProjectFile(Path) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
setProjectId(long) - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
setProjectIds(LongList) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROProjectReferenceDataSource
 
setProjectInfoGeneratesPreview(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setProjectNameAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setProjectNameFilters(StringQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setProjectTemplate(ProjectsSettings.ProjectTemplateEnum) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
setPropertyPanel(Component) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Sets the component displayed in the right property panel
setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingBox
 
setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ClosingDiamond
 
setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningBox
 
setRadius(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2OpeningDiamond
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
 
setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
 
setRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
 
setRadius(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
setRadiusIncrement(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
setRadiusX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
setRadiusX(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixels2dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroPixelsSliceBySliceSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMaximaSliceBySliceBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DetectMinimaSliceBySliceBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum2dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumSliceBySliceSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean2dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MeanSliceBySliceSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median2dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MedianSliceBySliceSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum2dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumSliceBySliceSphere
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
setRadiusY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
setRadiusY(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2BottomHatSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2CountNonZeroVoxels3dSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EntropyBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Maximum3dSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Mean3dSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Median3dSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Minimum3dSphere
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatBox
 
setRadiusZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2TopHatSphere
 
setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
setRadiusZ(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
setRankingFunction(RankingFunction<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
setRatio(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setRealTimeRunDelay(int) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
setRealTimeRunEnabled(boolean) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
setRecalibrate(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
 
setRecentJsonExtensionProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
setRecentProjects(PathList) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AppendRectangularRoiAlgorithm
 
setRectangles(RectangleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
 
setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedAppendRectangularRoiAlgorithm
 
setRectangles(Margin.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
 
setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
setRecursive(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
setRecursiveFollowsLinks(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
setReferenceColumns(Set<String>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
Sets the reference columns An empty list merges all data into one batch Setting it to null splits all data into a separate batch
setReferenceColumns(JIPipeColumnGrouping, StringQueryExpression) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
setReferenceSlice(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualizeMeanIntensitiesOfSlices
 
setRegexString(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
setRegistry(JIPipe) - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
 
setRegistry(JIPipe) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
 
setRegistry(JIPipe) - Method in interface org.hkijena.jipipe.JIPipeJavaExtension
Sets the registry
setRegistry(JIPipe) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Sets the registry instance
setRelativeLocation(Path) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
setRemoveColumn(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.RemoveArrayAnnotationsAlgorithm
 
setRemoveExtensions(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
 
setRemoveLut(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setRemoveLut(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
setRemoveOutputAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
setRenamingEntries(StringQueryExpressionAndStringPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameSingleColumnsAlgorithm
 
setRenamingEntries(StringQueryExpressionAndStringPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsAlgorithm
 
setRenamingEntries(StringQueryExpressionAndStringQueryPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.RenameTableColumnsToAnnotationAlgorithm
 
setRenderer(ListCellRenderer<T>) - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
setReplaceIfExists(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateColumnAlgorithm
 
setReport(JIPipeValidityReport) - Method in class org.hkijena.jipipe.ui.components.JIPipeValidityReportUI
 
setResolution(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setResourcePath(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
setRestoreTabs(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
 
setRestrictToROI(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setRight(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setRoi(Margin) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
 
SetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
SetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm
Instantiates a new node type.
SetRoiImageAlgorithm(SetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SetRoiImageAlgorithm
Instantiates a new node type.
setRoiName(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesAlgorithm
 
setRoiName(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ChangeRoiPropertiesFromAnnotationsAlgorithm
 
setRollingBallRadius(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
setRotateTemplate(IntegerRange) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setRotation(double) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
setRotationDirection(TransformRotate2DAlgorithm.RotationMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
setRotations(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
setRotationStep(double) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
setRowGenerator(Supplier<List<Object>>) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
setRowList(List<JIPipeExportedDataTable.Row>) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Sets list of rows
setRowMergingStrategy(JIPipeAnnotationMergeStrategy) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ColumnsToAnnotationsAlgorithm
 
setRowNormalization(TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.MergeTableColumnsAlgorithm
 
setRows(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setRows(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.MontageToStackAlgorithm
 
setRows(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
setSaveOutputs(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setSavePath(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
setSaveRGBWithImageJ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
setSaveROI(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AddImageAndScalar
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2EqualConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2GreaterOrEqualConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MultiplyImageAndScalar
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2NotEqualConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SmallerOrEqualConstant
 
setScalar(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2SubtractImageFromScalar
 
setScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.InputImagesToMontage
 
setScale(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
setScaleFactorX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setScaleFactorY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setScales(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
setScrollPane(JScrollPane) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setSecondColor(Color) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorAlgorithm
 
setSelectColorPrompt(String) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
setSelectedCalibration(ImageJCalibrationMode) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
setSelectedColor(Color) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
setSelectedDataTypes(Set<JIPipeDataInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
 
setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
setSelectedInfo(JIPipeParameterTypeInfo) - Method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
 
setSelectedInfo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
 
setSelectedInfos(Set<JIPipeNodeInfo>) - Method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
 
setSelectedItem(T) - Method in class org.hkijena.jipipe.ui.components.SearchBox
 
setSelectedNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.ui.components.PickNodeDialog
 
setSelectedTab(String) - Method in class org.hkijena.jipipe.ui.project.JIPipeProjectTabMetadata
 
setSelection(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.MultiSelectionModel
 
setSelectionInterval(int, int) - Method in class org.hkijena.jipipe.ui.components.SingleSelectionModel
 
setSeparateChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setSeparatorString(String) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setSeriesToImport(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setServer(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
setSetter(Function<Object, Boolean>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the setter
setSetter(Method) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the short key
setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setShortKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setShowIntroduction(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setShowIntroductionTour(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setShowParameterSearchBar(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setShowProjectInfo(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setSigma(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
 
setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
setSigma1x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
setSigma1y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigma1z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
setSigma2x(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian2d
 
setSigma2y(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigma2z(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2DifferenceOfGaussian3d
 
setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
setSigmaX(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
setSigmaY(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
setSigmaZ(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
setSilent(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
setSilent(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
setSkipExisting(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm.DataBatchGenerationSettings
 
setSkipIncompleteDataSets(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm.DataBatchGenerationSettings
 
setSkipInvalid(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.GreyscalePixelsGenerator
 
setSliceAnnotation(String) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator
 
setSlicesToImport(IntegerRange) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setSlicingMode(FrangiVesselnessFeatures.SlicingMode) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
setSlotConfiguration(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
 
setSlotName(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
Sets the slot name
setSlotName(String) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.GetJIPipeSlotFolderAlgorithm
 
setSlots(List<JIPipeDataSlot>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
setSmoothing(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
setSortedStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
setSortFilesNumerically(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setSortOrderList(MeasurementColumnSortOrder.List) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
 
setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the parameter source
setSource(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setSourceDocumentation(JIPipeParameterCollection, JIPipeDefaultDocumentation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Sets source documentation
setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.DefineRectangularRoiAlgorithm
 
setSplit(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ReferencedDefineRectangularRoiAlgorithm
 
setSplitAfterwards(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiCalculatorAlgorithm
 
setSplitAtJunctions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setSplitByInputSlots(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
setSplitC(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setSplitChannels(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setSplitChannels(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setSplitCharacter(String) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
setSplitFocalPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setSplitFocalPlanes(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setSplitPickedIndex(int) - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
setSplitSlices(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setSplitT(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setSplitTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setSplitTimePoints(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setSplitZ(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEExporterSettings
 
setStackOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setStackOrder(DimensionOrder) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setStackSizeAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setStartAngleDegrees(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ResliceRadial
 
setStartSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
 
setStartX(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop2d
 
setStartY(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
setStartZ(int) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Crop3d
 
setStatisticsParameters(ImageStatisticsSetParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.FindParticles2D
 
setStitchTiles(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setStitchTiles(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setStopSlice(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
setStoragePath(Path) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Sets storage path that is used during running the algorithm for saving the results
setStoragePath(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the storage path.
setStoredAsResource(boolean) - Method in class org.hkijena.jipipe.api.JIPipeProjectTemplate
 
setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.JIPipeRunSettings
 
setStoreToCache(boolean) - Method in class org.hkijena.jipipe.api.testbench.JIPipeTestBenchSettings
 
setStrict(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setStrictMode(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
setStringValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
 
setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
setSubFolder(String) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListSubfolders
 
setSubPath(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
Sets the subfolder
setSubtract(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm
 
setSuffix(String) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
setSwapDimensions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setSwapDimensions(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setSwitchPanningDirection(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings
 
setT(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
setTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
setTableModel(ResultsTableData) - Method in class org.hkijena.jipipe.ui.tableanalyzer.JIPipeTableEditor
 
setTables(ResultsTableDataList) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.DefineTablesAlgorithm
 
setTagAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setTagAnnotation(OptionalStringParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROTableAlgorithm
 
setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setTagAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindDatasetAlgorithm
 
setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindImageAlgorithm
 
setTagFilters(StringMapQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.datasources.OMEROFindProjectAlgorithm
 
setTempDirectory(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.RuntimeSettings
 
setTempDirectory(OptionalPathParameter) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
setTemplateDescription(String) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata
 
setTemplateMatchingMethod(TemplateMatchingMethod) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setTemporaryDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.installer.linux.ui.utils.MarkdownReader
Sets the document to some temporary one without changing the reference to the main document
setTemporaryDocument(MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.MarkdownReader
Sets the document to some temporary one without changing the reference to the main document
setText(String) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
 
setText(String) - Method in class org.hkijena.jipipe.ui.components.FancyTextField
 
setText(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField
 
setText(String) - Method in class org.hkijena.jipipe.ui.texteditor.JIPipeTextEditor
 
setTheme(JIPipeUITheme) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setThreadPool(JIPipeFixedThreadPool) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Sets the thread pool.
setThreads(OptionalIntegerParameter) - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
setThreshold(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Threshold
 
setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
setThreshold(float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
setThreshold(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.MaskToRoiAlgorithm
 
setThreshold(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
setThreshold_intensity(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumZProjectionThresholdedBounded
 
setTitle(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Sets the plot title
setTitle(String) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane.DocumentTab
 
setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
setTitle(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
setTitle(String) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.BioFormatsImporter
 
setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datasources.ImagePlusFromFile
 
setTitleAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.DownloadOMEROImageAlgorithm
 
setTitleFilterExpression(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io.ResultsTableFromGUI
 
setTitleFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setTo(JIPipeSlotConfiguration) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
setTo(JIPipeSlotConfiguration) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Makes this slot configuration equivalent to the provided one
setTo2ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
setTo2ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setTo3ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
setTo3ChannelExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
setToAskOnClose(JFrame, String, String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
Installs an event to the window that asks the user before the window is closes
setToAskOnClose(JFrame, String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Installs an event to the window that asks the user before the window is closes
SetToColorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
SetToColorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm
 
SetToColorAlgorithm(SetToColorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToColorAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ModifyAnnotationScript
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.FilterPaths
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ListFiles
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.datasources.ImageStackFromFolder
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterAndMergeRoiByStatisticsScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.FilterRoiByStatisticsScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.IteratingPythonScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.MergingPythonScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.ParameterSlotPythonScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.PythonScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.FilterTableAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.GenerateTableFromExpressionAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyAndMergeTablesScript
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTableColumnNamesAlgorithm
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.ModifyTablesScript
 
setToExample(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
setTop(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
SetToValueAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
SetToValueAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm
 
SetToValueAlgorithm(SetToValueAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm
 
setTrack(int) - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform2d
 
setTransform(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AffineTransform3d
 
setTransformation(ApplyMath2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
setTransformation(DefaultExpressionParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
 
setTransformation(ApplyTransform2DAlgorithm.Transformation) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
 
setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
 
setTranslateX(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate2d
 
setTranslateY(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
setTranslateZ(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2Translate3d
 
setTree(JIPipeParameterTree) - Method in class org.hkijena.jipipe.ui.components.ParameterTreeUI
 
setTrueDataType(String) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable.Row
 
setTrySolveJunctions(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
setUiExcludedSubParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setUiHidden(boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphEdge
 
setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the UI order
setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
 
setUiOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setUIOrder(int) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setUniqueStackIds(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
setup() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCachedSlotToFilesByMetadataExporterRun
Opens the necessary dialogs
setup() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeResultCopyFilesByMetadataExporterRun
Opens the necessary dialogs
setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.api.JIPipeProjectMetadata
 
setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
 
setUpdateSitesToAddAndActivate(List<UpdateSite>) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
setUploadAnnotations(boolean) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
setUploadedAnnotationsFilter(AnnotationQueryExpression) - Method in class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
SetupPanel - Class in org.hkijena.jipipe.installer.linux.ui
 
SetupPanel(MainWindow) - Constructor for class org.hkijena.jipipe.installer.linux.ui.SetupPanel
 
setUrl(String) - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
setUrls(StringList) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.DownloadFilesDataSource
 
setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
setUseAveraging(boolean) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
setUseBioFormats(boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesSettings
 
setUseExactValue(boolean) - Method in class org.hkijena.jipipe.extensions.parameters.roi.IntModificationParameter
 
setUseNativeChooser(boolean) - Method in class org.hkijena.jipipe.extensions.settings.FileChooserSettings
 
setUseNaturalSortOrder(boolean) - Method in class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
 
setUseOutlinePaintForWhiskers(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the flag that, if true, causes the whiskers to be drawn using the series outline paint, and sends a RendererChangeEvent to all registered listeners.
setUserName(String) - Method in class org.hkijena.jipipe.extensions.omero.OMEROCredentials
 
setUserSelectedMethod(String) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2AutomaticThreshold
 
setValidateImageJDependencies(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
setValidateNodeTypes(boolean) - Method in class org.hkijena.jipipe.extensions.settings.ExtensionSettings
 
setValidateOnSave(boolean) - Method in class org.hkijena.jipipe.extensions.settings.GeneralUISettings
 
setValue(String) - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
setValue(String, T) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Sets a parameter value
setValue(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SetToValueAlgorithm
 
setValue(double) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
setValue(String) - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
 
setValue(V) - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
setValue(T) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicEnumParameter
 
setValue(String) - Method in class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource
 
setValue(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
 
setValue(Object) - Method in class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
 
setValue(String) - Method in class org.hkijena.jipipe.utils.MacroSetting
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeExportedDataTable
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.table.ParameterTable
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.DataSlotTableModel
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
setValueAt(Object, int, int) - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
setValueAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
setValueAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
 
setValueAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData
 
setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MaximumImageAndScalar
 
setValueB(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2MinimumImageAndScalar
 
setValueReplacement(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
 
setValues(Set<T>) - Method in class org.hkijena.jipipe.extensions.parameters.primitives.DynamicSetParameter
 
setValueToReplace(float) - Method in class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2FloodFillDiamond
 
setVersion(String) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Sets the version
setViewMode(JIPipeGraphViewMode) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
setVirtual(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
setVirtualCache(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
setVirtualMode(boolean) - Method in class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Sets the visibility
setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeMutableParameterAccess
Sets the visibility
setVisibility(String, boolean) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Sets the visibility of parameter with specified key
setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
setVisibility(JIPipeParameterVisibility) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterAccess
 
setVisible(boolean) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
setVisible(boolean) - Method in class org.hkijena.jipipe.utils.MacroFlag
 
setVisibleCompartments(Set<String>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the list of additional compartments this algorithm is visible in.
setVisibleParameters(Set<String>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollectionVisibilities
Sets visible parameters
setWebsite(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
Sets the website
setWhiskerWidth(double) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Sets the width of the whiskers as a fraction of the bar width and sends a RendererChangeEvent to all registered listeners.
setWidth(int) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
setWidth(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.parameters.roi.Margin
 
setWidthAnnotation(OptionalAnnotationNameParameter) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePropertiesToAnnotationAlgorithm
 
setWithLegend(boolean) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
setWithMetadataKeys(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
 
setWithNonMaximaSuppression(boolean) - Method in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingAlgorithm
 
setWithParents(boolean) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
Sets the subfolder
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.JIPipeProject
Sets the folder where the project is currently working in.
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Sets the current work directory of this algorithm.
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
setWorkDirectory(Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
 
setWrappedGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.grouping.parameters.NodeGroupContents
 
setWrappedIcon(ImageIcon) - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
setxAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
setxAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
setxAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
setxAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
setXyAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.AssembleExtractedROIAlgorithm
 
setXyAnchor(Anchor) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.ExtractFromROIAlgorithm
 
setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
setyAxis(IntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
setyAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
setyAxisFontSize(int) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
setyAxisLabel(String) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
 
setZ(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
setzAxis(OptionalIntModificationParameter) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
setZoom(double) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelCanvas
 
setZoom(double) - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
SHAPE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
Sheet(String, Icon, String, Icon, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeSettingsRegistry.Sheet
Creates a new instance
ShortParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Short
ShortParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortParameterTypeInfo
 
ShortPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.primitives
Info for Short
ShortPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.ShortPrimitiveParameterTypeInfo
 
ShortRangeParameterGenerator - Class in org.hkijena.jipipe.extensions.parameters.generators
Generates Short
ShortRangeParameterGenerator(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.parameters.generators.ShortRangeParameterGenerator
Creates a new instance
shouldFillGap(int, int, int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
shouldPadTabRun(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
shouldRotateTabRuns(int, int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation
Imports the data and shows it
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenContainingFolderDataImportOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenInNativeApplicationDataImportOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.core.data.OpenTextInJIPipeDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.filesystem.resultanalysis.OpenPathDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
show(JIPipeWorkbench, JIPipeCacheSlotDataSource, String) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CacheAwareImagePlusDataViewerPanel
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoImageJOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImagePlusDataImportIntoJIPipeOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ImportImageJPathDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoImageJOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportIntoJIPipeOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.OMEImageDataImportViaBioFormatsOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.resultanalysis.ROIDataImportIntoImageOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.plots.ui.resultanalysis.OpenPlotInJIPipeDataOperation
 
show(JIPipeWorkbench, JIPipeCacheSlotDataSource, String) - Static method in class org.hkijena.jipipe.extensions.tables.display.CacheAwareTableEditor
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInImageJDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.tables.display.OpenResultsTableInJIPipeTabDataOperation
 
show(JIPipeDataSlot, JIPipeExportedDataTable.Row, Path, String, String, String, JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.utils.display.ImportJIPipeProjectDataOperation
 
showConnectionErrorMessage(Component, JIPipeDataSlot, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
showCurrentFilesCollection() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
showDialog(Component, String, Set<ExpressionParameterVariable>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderUI
 
showDialog(Component) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.FunctionSelectorList
 
showDialog(Component, ExpressionEvaluator) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.OperatorSelectorList
 
showDialog(Component, Set<ExpressionParameterVariable>) - Static method in class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList
 
showDialog(Component, JIPipeGraphHistory, JIPipeGraphNode, JIPipeSlotType) - Static method in class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
Shows a dialog for adding slots
showDialog(Component, JIPipeDynamicParameterCollection) - Static method in class org.hkijena.jipipe.ui.components.AddDynamicParameterPanel
Shows a dialog for adding slots
showDialog(Component, JIPipeGraphHistory, JIPipeDataSlot) - Static method in class org.hkijena.jipipe.ui.components.EditAlgorithmSlotPanel
Shows a dialog for adding slots
showDialog(Component, JIPipeDataTypePicker.Mode, Set<JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeDataTypePicker
Shows a dialog to pick traits
showDialog(Component, String, Set<String>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeIconPickerDialog
Picks an icon name using a dialog
showDialog(Component, JIPipeNodeInfoPicker.Mode, Set<JIPipeNodeInfo>) - Static method in class org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker
Shows a dialog to pick traits
showDialog(Component, Set<JIPipeGraphNode>, JIPipeGraphNode, String) - Static method in class org.hkijena.jipipe.ui.components.PickNodeDialog
Shows a dialog for selecting an algorithm
showDialog(Component, JIPipeWorkbench, Class<? extends JIPipeParameterGeneratorUI>) - Static method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterGeneratorUI
Shows a dialog that allows the user to setup the generator
showDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Static method in class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog
Shows the dialog
showImage(ImagePlus, String) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
Opens the image in a new frame
showPickerDialog(Component, JIPipeParameterTree, String) - Static method in class org.hkijena.jipipe.ui.components.ParameterTreeUI
Picks a node or parameter
showSlide(String) - Method in class org.hkijena.jipipe.utils.DotSlideshow
 
showSplash(Context) - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
shutdown() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
Forces the thread pool to shut down
SignColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
SignColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation
 
SimpleFileAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Generates annotations from filenames
SimpleFileAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
New instance
SimpleFileAnnotationGenerator(SimpleFileAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFileAnnotationGenerator
Copies the algorithm
SimpleFolderAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Algorithm that generates annotations from folder names
SimpleFolderAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
Creates a new instance
SimpleFolderAnnotationGenerator(SimpleFolderAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimpleFolderAnnotationGenerator
Copies the algorithm
SimpleIteratingPythonScriptAlgorithm - Class in org.hkijena.jipipe.extensions.python
An algorithm that allows to run Python code
SimpleIteratingPythonScriptAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
Creates a new instance
SimpleIteratingPythonScriptAlgorithm(SimpleIteratingPythonScriptAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.python.SimpleIteratingPythonScriptAlgorithm
Creates a copy
simpleOMEExport(ImagePlus, Path) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
Copy of the run method in Exporter, as the plugin code really depends on some UI interaction We also simplified the code, as JIPipe outputs very standard files
SimplePathAnnotationGenerator - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Algorithm that generates annotations from folder names
SimplePathAnnotationGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
Creates a new instance
SimplePathAnnotationGenerator(SimplePathAnnotationGenerator) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.SimplePathAnnotationGenerator
Copies the algorithm
SineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
SineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation
 
SingleExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
ExpressionParameterVariableSource that contains exactly one variable.
SingleExpressionParameterVariableSource(String, String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource
 
SingleExpressionParameterVariableSource(ExpressionParameterVariable) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.SingleExpressionParameterVariableSource
 
SingleFileSelectionPanel - Class in org.hkijena.jipipe.ui.ijupdater
Opened when selecting one file
SingleFileSelectionPanel(JIPipeWorkbench, ManagerUI, FileObject) - Constructor for class org.hkijena.jipipe.ui.ijupdater.SingleFileSelectionPanel
 
SingleImageJAlgorithmRun - Class in org.hkijena.jipipe.api.compat
Settings class used for a single algorithm run
SingleImageJAlgorithmRun(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.api.compat.SingleImageJAlgorithmRun
 
SingleImageJAlgorithmRun.Serializer - Class in org.hkijena.jipipe.api.compat
Serializes the run
SingleSelectionModel - Class in org.hkijena.jipipe.ui.components
Selection model for single selections
SingleSelectionModel() - Constructor for class org.hkijena.jipipe.ui.components.SingleSelectionModel
 
size() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
 
SIZE - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
SLOT_PARAMETERS - Static variable in class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm
 
SlotConfigurationHistorySnapshot - Class in org.hkijena.jipipe.api.history
 
SlotConfigurationHistorySnapshot(JIPipeGraphNode, String) - Constructor for class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
SlotMapParameterCollection - Class in org.hkijena.jipipe.extensions.parameters.collections
Parameter that holds a value for each data slot
SlotMapParameterCollection(Class<?>, JIPipeGraphNode, Supplier<Object>, boolean) - Constructor for class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
Creates a new instance
slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
slotName() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
SlotsChangedEvent(JIPipeSlotConfiguration) - Constructor for class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.SlotsChangedEvent
Creates a new instance
SobelEdgeDetectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
Wrapper around ImageProcessor
SobelEdgeDetectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm
Instantiates a new node type.
SobelEdgeDetectorAlgorithm(SobelEdgeDetectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm
Instantiates a new node type.
SortAndExtractRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
SortAndExtractRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
Instantiates a new node type.
SortAndExtractRoiByStatisticsAlgorithm(SortAndExtractRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SortAndExtractRoiByStatisticsAlgorithm
Instantiates a new node type.
SortAscendingArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
SortAscendingArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortAscendingArrayFunction
 
SortAscendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Sorts the items ascending
SortAscendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation
 
SortDescendingArrayFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
SortDescendingArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.SortDescendingArrayFunction
 
SortDescendingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Sorts the items ascending
SortDescendingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation
 
SortOrder - Enum in org.hkijena.jipipe.extensions.parameters.util
Sort orders
SortRowsAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
SortRowsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
SortRowsAlgorithm(SortRowsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.SortRowsAlgorithm
 
SortTableAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
SortTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
Creates a new instance
SortTableAlgorithm(SortTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SortTableAlgorithm
Creates a copy
SplashScreen - Class in org.hkijena.jipipe.ui.components
 
SplashScreen() - Constructor for class org.hkijena.jipipe.ui.components.SplashScreen
 
splitAll() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Splits all ShapeRoi that consist of multiple sub-Roi into their individual sub-Roi.
splitBy(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Splits this table into multiple tables according to an internal or external column
SplitByAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that splits the input data by a specified annotation
SplitByAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation
 
SplitByAnnotation(SplitByAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotation
Copies the algorithm
SplitByAnnotationScript - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that annotates all data with the same annotation
SplitByAnnotationScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
 
SplitByAnnotationScript(SplitByAnnotationScript) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.SplitByAnnotationScript
Copies the algorithm
SplitChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Wrapper around ChannelArranger
SplitChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
Instantiates a new node type.
SplitChannelsAlgorithm(SplitChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
Creates a copy
SplitRGBChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
SplitRGBChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm
 
SplitRGBChannelsAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitRGBChannelsAlgorithm
 
SplitRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
SplitRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm
Instantiates a new node type.
SplitRoiAlgorithm(SplitRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiAlgorithm
Instantiates a new node type.
SplitRoiConnectedComponentsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
SplitRoiConnectedComponentsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
SplitRoiConnectedComponentsAlgorithm(SplitRoiConnectedComponentsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm
 
SplitRoiConnectedComponentsAlgorithm.DimensionOperation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
SplitTableByColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
SplitTableByColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
Creates a new instance
SplitTableByColumnsAlgorithm(SplitTableByColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableByColumnsAlgorithm
Creates a copy
SplitTableIntoColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that integrates columns
SplitTableIntoColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
Creates a new instance
SplitTableIntoColumnsAlgorithm(SplitTableIntoColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.SplitTableIntoColumnsAlgorithm
Creates a copy
SqrtColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a square root function
SqrtColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation
 
SquareColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a square function
SquareColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation
 
StackedBarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Generates a bar category plot
StackedBarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData
Creates a new instance
StackedBarCategoryPlotData(StackedBarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StackedBarCategoryPlotData
Creates a copy
StackInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ImageProcessor
StackInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm
Instantiates a new node type.
StackInverterAlgorithm(StackInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm
Instantiates a new node type.
StackMergerAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ImageProcessor
StackMergerAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
Instantiates a new node type.
StackMergerAlgorithm(StackMergerAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
Instantiates a new node type.
StackSplitterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ChannelArranger
StackSplitterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
Instantiates a new node type.
StackSplitterAlgorithm(StackSplitterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
Creates a copy
StackTo2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ImageProcessor
StackTo2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
Instantiates a new node type.
StackTo2DAlgorithm(StackTo2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
Instantiates a new node type.
StackToMontageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Implementation of MontageMaker
StackToMontageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
StackToMontageAlgorithm(StackToMontageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackToMontageAlgorithm
 
stageActivateUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
STANDARD_DATA_OPERATIONS - Static variable in class org.hkijena.jipipe.extensions.plots.PlotsExtension
 
StandardParametersExtension - Class in org.hkijena.jipipe.extensions.parameters
Provides some standard parameters
StandardParametersExtension() - Constructor for class org.hkijena.jipipe.extensions.parameters.StandardParametersExtension
 
StandardSettingsExtension - Class in org.hkijena.jipipe.extensions.settings
Extension that provides all JIPipe included settings sheets
StandardSettingsExtension() - Constructor for class org.hkijena.jipipe.extensions.settings.StandardSettingsExtension
 
start() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.NonCollidingRectangularLineDrawer
 
start(int, int) - Method in class org.hkijena.jipipe.ui.grapheditor.connections.RectangularLineDrawer
 
startAndJoin(Thread[]) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
Start all given threads and wait on each of them until all are done.
startRun() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunExecuterUI
Starts the run
startRun() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunExecuterUI
Starts the run
startTransform() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Hough_Circle
 
StateSerializer() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm.StateSerializer
 
StatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for statistical plots.
StatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData
Creates a new instance
StatisticalCategoryPlotData(StatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData
Creates a copy
StatisticsAverageIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the average
StatisticsAverageIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation
 
StatisticsCountIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the number of rows
StatisticsCountIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation
 
StatisticsCountNonZeroIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements counting non-zero elements
StatisticsCountNonZeroIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation
 
StatisticsCumulativeSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the cumulative sum Y_0=X_0; Y_i=Y_{i-1}+X_i
StatisticsCumulativeSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation
 
StatisticsGeometricMeanIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the geometric mean
StatisticsGeometricMeanIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation
 
StatisticsKurtosisIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the kurtosis
StatisticsKurtosisIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation
 
StatisticsMaxIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the max value
StatisticsMaxIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation
 
StatisticsMedianIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the median value
StatisticsMedianIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation
 
StatisticsMinIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the min value
StatisticsMinIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation
 
StatisticsSkewnessIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the skewness
StatisticsSkewnessIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation
 
StatisticsStandardDeviationIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the standard deviation
StatisticsStandardDeviationIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation
 
StatisticsVarianceIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the variance
StatisticsVarianceIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation
 
StatisticsWeightedSumColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the weighted sum sum_{i=1,2,...}
StatisticsWeightedSumColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation
 
StatusUpdatedEvent(JIPipeProgressInfo, int, int, String) - Constructor for class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEvent
 
stop() - Method in class org.hkijena.jipipe.ui.components.ThrobberIcon
 
store(JIPipeGraphNode, JIPipeProjectCacheState, JIPipeDataSlot, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Stores data into the cache
StringAndStringPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames an integer into another integer
StringAndStringPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter
Creates a new instance
StringAndStringPairParameter(StringAndStringPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringAndStringPairParameter
Creates a copy
StringAndStringPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
A collection of multiple StringAndStringPairParameter
StringArrayColumnToTableConverter - Class in org.hkijena.jipipe.extensions.tables
Converts a column to a table
StringArrayColumnToTableConverter() - Constructor for class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
StringArrayTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes
TableColumn that contains doubles.
StringArrayTableColumn(String[], String) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.StringArrayTableColumn
Creates a new instance
StringData - Class in org.hkijena.jipipe.extensions.strings
A data type that contains a string
StringData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData
 
StringData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.StringData
 
StringDataConverter - Class in org.hkijena.jipipe.extensions.strings
 
StringDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
StringDefinitionDataSource - Class in org.hkijena.jipipe.extensions.strings.datasources
 
StringDefinitionDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource
 
StringDefinitionDataSource(StringDefinitionDataSource) - Constructor for class org.hkijena.jipipe.extensions.strings.datasources.StringDefinitionDataSource
 
StringJoinFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
StringJoinFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringJoinFunction
 
StringList - Class in org.hkijena.jipipe.extensions.parameters.primitives
A list of String
StringList() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList
Creates a new empty list
StringList(StringList) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringList
Creates a copy
StringMapQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
StringMapQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
 
StringMapQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
 
StringMapQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
 
StringOrDouble - Class in org.hkijena.jipipe.extensions.parameters.primitives
Can either filter a string or a double
StringOrDouble() - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
Creates a new instance
StringOrDouble(StringOrDouble) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble
Copies the object
StringOrDouble.List - Class in org.hkijena.jipipe.extensions.parameters.primitives
A collection of multiple StringOrDouble The filters are connected via "OR"
StringOrDouble.Mode - Enum in org.hkijena.jipipe.extensions.parameters.primitives
Modes are that a column is picked or one is generated
StringOrDoubleParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
A parameter editor UI for StringOrDouble
StringOrDoubleParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringOrDoubleParameterEditorUI
 
StringParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.primitives
Parameter editor for String
StringParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.primitives.StringParameterEditorUI
 
StringParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.primitives
Settings for String parameters
StringPatternExtraction - Class in org.hkijena.jipipe.extensions.parameters.patterns
A parameter that extracts a pattern from a string
StringPatternExtraction() - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
Creates a new instance
StringPatternExtraction(StringPatternExtraction) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
Creates a copy
StringPatternExtraction.List - Class in org.hkijena.jipipe.extensions.parameters.patterns
A collection of multiple StringPatternExtraction
StringPatternExtraction.Mode - Enum in org.hkijena.jipipe.extensions.parameters.patterns
Available modes
StringPatternExtractionFunction - Class in org.hkijena.jipipe.extensions.parameters.functions
A function entry that applies pattern extraction to an String
StringPatternExtractionFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction
Creates a new instance
StringPatternExtractionFunction(StringPatternExtractionFunction) - Constructor for class org.hkijena.jipipe.extensions.parameters.functions.StringPatternExtractionFunction
Creates a copy
StringPatternExtractionFunction.List - Class in org.hkijena.jipipe.extensions.parameters.functions
StringPatternExtractionParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.patterns
StringPatternExtractionParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtractionParameterEditorUI
 
StringQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
Expression for querying strings
StringQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
 
StringQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
 
StringQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
 
StringQueryExpressionAndSortOrderPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
StringQueryExpressionAndSortOrderPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter
Creates a new instance
StringQueryExpressionAndSortOrderPairParameter(StringQueryExpressionAndSortOrderPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndSortOrderPairParameter
Creates a copy
StringQueryExpressionAndSortOrderPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
StringQueryExpressionAndStringPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames a matching string into another string
StringQueryExpressionAndStringPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter
Creates a new instance
StringQueryExpressionAndStringPairParameter(StringQueryExpressionAndStringPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringPairParameter
Creates a copy
StringQueryExpressionAndStringPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
StringQueryExpressionAndStringQueryPairParameter - Class in org.hkijena.jipipe.extensions.parameters.pairs
A parameter that renames a matching string into another string
StringQueryExpressionAndStringQueryPairParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter
Creates a new instance
StringQueryExpressionAndStringQueryPairParameter(StringQueryExpressionAndStringQueryPairParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.pairs.StringQueryExpressionAndStringQueryPairParameter
Creates a copy
StringQueryExpressionAndStringQueryPairParameter.List - Class in org.hkijena.jipipe.extensions.parameters.pairs
StringQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
Variables for querying strings
StringQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpressionVariableSource
 
StringRegexReplaceFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
StringRegexReplaceFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringRegexReplaceFunction
 
StringReplaceFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
StringReplaceFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringReplaceFunction
 
StringsExtension - Class in org.hkijena.jipipe.extensions.strings
Provides data types dor handling strings
StringsExtension() - Constructor for class org.hkijena.jipipe.extensions.strings.StringsExtension
 
StringSplitFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
StringSplitFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.StringSplitFunction
 
StringUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils
Utilities for strings
StringUtils - Class in org.hkijena.jipipe.utils
Utilities for strings
STROKE_DEFAULT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
STROKE_HIGHLIGHT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
STROKE_MARQUEE - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
STROKE_SELECTION - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
STROKE_UNIT - Static variable in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
styleText(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
 
styleText(boolean, boolean, boolean) - Method in class org.hkijena.jipipe.ui.components.FancyTextField
 
SUBCONTROL_BACKGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
SubtractionFunctionOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
SubtractionFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.SubtractionFunctionOperator
 
SugiyamaGraphAutoLayoutMethod - Class in org.hkijena.jipipe.ui.grapheditor.layout
Applies auto-layout according to Sugiyama et al.
SugiyamaGraphAutoLayoutMethod() - Constructor for class org.hkijena.jipipe.ui.grapheditor.layout.SugiyamaGraphAutoLayoutMethod
 
SumIntegratingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.integrating
Implements calculating the sum
SumIntegratingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation
 
supportsImageJData(Class<?>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns true if the ImageJ data type is supported
supportsJIPipeData(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Returns true if the JIPipe data type is supported
supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingAlgorithm
 
supportsParallelization() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeParallelizedAlgorithm
Indicates to the algorithm base implementation if parallelization is supported.
supportsParallelization() - Method in class org.hkijena.jipipe.api.nodes.JIPipeSimpleIteratingAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.GaussianBlur3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurFilter3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurGreyscale8U2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.MedianBlurRGB2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.InvertColorsAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.SplitChannelsAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.IlluminationCorrection2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackInverterAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackMergerAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackSplitterAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.StackTo2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.SobelEdgeDetectorAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.MeijeringVesselness2DFeatures
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DForwardTransform
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DInverseTransform
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.fft.FFT2DSwapQuadrants
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.GenerateStructureElementAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.generate.ImageFromMatrix2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyDistanceTransform2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.DivideByMaximumAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.GenerateFromMathExpression2D
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.Hessian2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMaximumFilter3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalMinimumFilter3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.LocalVarianceFilter3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.RemoveNaNFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.Morphology2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyFillHoles2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyInternalGradient2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyOutline2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologySkeletonize2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.DespeckleFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.sharpen.LaplacianSharpen2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.FastHoughSegmentation2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HessianSegmentation2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.HoughSegmentation2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.InternalGradientSegmentation2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold16U2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.ManualThreshold8U2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.PercentileThreshold8U2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
 
supportsParallelization() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.RunJIPipeProjectAlgorithm
 
switchToContent(Component) - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Switches to the provided content
switchToLastTab() - Method in class org.hkijena.jipipe.ui.components.DocumentTabPane
Switches the the last tab.
switchToMode(ExpressionBuilderParameterUI.Mode) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI
 

T

TAB_APPLICATION_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_COMPARTMENT_EDITOR - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_INTRODUCTION - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_LICENSE - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_PLUGIN_MANAGER - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_PLUGIN_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_PROJECT_SETTINGS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
TAB_VALIDITY_CHECK - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
tabAreaBackground - Variable in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
TabbedPaneLayout() - Constructor for class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI.TabbedPaneLayout
 
TableCellExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
TableCellExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellExpressionParameterVariableSource
 
TableCellValueExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
TableCellValueExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueExpressionParameterVariableSource
 
TableCellValueQueryExpression - Class in org.hkijena.jipipe.extensions.parameters.expressions
Expression for querying strings
TableCellValueQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression
 
TableCellValueQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression
 
TableCellValueQueryExpression(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression
 
TableColumn - Interface in org.hkijena.jipipe.extensions.tables.datatypes
An JIPipeData type that represents a column.
TableColumnConversionParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums
Enum-like parameter that allows the selection of a ConvertingColumnOperation.
TableColumnConversionParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
Creates a new instance
TableColumnConversionParameter(TableColumnConversionParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnConversionParameter
Creates a copy
TableColumnGeneratorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums
A parameter that allows the user to setup a table column generator
TableColumnGeneratorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
Creates a new instance
TableColumnGeneratorParameter(TableColumnGeneratorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameter
Creates a copy
TableColumnGeneratorParameterEditorUI - Class in org.hkijena.jipipe.extensions.tables.parameters.enums
A parameter editor UI that works for all enumerations
TableColumnGeneratorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnGeneratorParameterEditorUI
 
TableColumnGeneratorProcessor - Class in org.hkijena.jipipe.extensions.tables.parameters.processors
Processor-like parameter that maps a column generator to a string
TableColumnGeneratorProcessor() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor
Creates a new instance
TableColumnGeneratorProcessor(TableColumnGeneratorProcessor) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.TableColumnGeneratorProcessor
Creates a copy
TableColumnGeneratorProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
 
TableColumnGeneratorProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList
Creates a new instance
TableColumnGeneratorProcessorParameterList(TableColumnGeneratorProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.TableColumnGeneratorProcessorParameterList
Creates a copy
TableColumnIntegrationParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.enums
Enum-like parameter that allows the selection of a IntegratingColumnOperation.
TableColumnIntegrationParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
Creates a new instance
TableColumnIntegrationParameter(TableColumnIntegrationParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.enums.TableColumnIntegrationParameter
Creates a copy
TableColumnNormalization - Enum in org.hkijena.jipipe.extensions.tables.datatypes
 
TableColumnReference - Class in org.hkijena.jipipe.extensions.tables
A table column that references a column within a ResultsTableData
TableColumnReference(ResultsTableData, int) - Constructor for class org.hkijena.jipipe.extensions.tables.TableColumnReference
 
TableColumnSourceExpressionParameter - Class in org.hkijena.jipipe.extensions.parameters.expressions
Parameter that acts as source (via matching a column) or a generator
TableColumnSourceExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
 
TableColumnSourceExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
 
TableColumnSourceExpressionParameter(ExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.TableColumnSourceExpressionParameter
 
tableFromOMERO(TableData) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
 
TableNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
TableNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
TablesExtension - Class in org.hkijena.jipipe.extensions.tables
Standard set of table operations
TablesExtension() - Constructor for class org.hkijena.jipipe.extensions.tables.TablesExtension
 
TablesFromScript - Class in org.hkijena.jipipe.extensions.tables.algorithms
Algorithm that annotates all data with the same annotation
TablesFromScript(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
 
TablesFromScript(TablesFromScript) - Constructor for class org.hkijena.jipipe.extensions.tables.algorithms.TablesFromScript
Copies the algorithm
TableToCircularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
TableToCircularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
Instantiates a new node type.
TableToCircularROIAlgorithm(TableToCircularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToCircularROIAlgorithm
Creates a copy
tableToOMERO(ResultsTableData) - Static method in class org.hkijena.jipipe.extensions.omero.util.OMEROUtils
 
TableToRectangularROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
TableToRectangularROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
Instantiates a new node type.
TableToRectangularROIAlgorithm(TableToRectangularROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm
Creates a copy
TableToRectangularROIAlgorithm.Anchor - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Available anchors
TableToRectangularROIAlgorithm.Mode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
TableUtils - Class in org.hkijena.jipipe.utils
Utilities for TableModel
TangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
TangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation
 
TemplateMatchingMethod - Enum in org.hkijena.jipipe.extensions.ijmultitemplatematching
 
TemplateProjectListCellRenderer - Class in org.hkijena.jipipe.ui.components
Renders a recent project
TemplateProjectListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.TemplateProjectListCellRenderer
 
TemporaryFileDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
 
TemporaryFileDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
TemporaryFileDataSource(TemporaryFileDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFileDataSource
 
TemporaryFolderDataSource - Class in org.hkijena.jipipe.extensions.filesystem.datasources
 
TemporaryFolderDataSource(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource
 
TemporaryFolderDataSource(TemporaryFolderDataSource) - Constructor for class org.hkijena.jipipe.extensions.filesystem.datasources.TemporaryFolderDataSource
 
test(Collection<JIPipeAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.AnnotationGeneratorExpression
Evaluates the expression as boolean
test(String, StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionEvaluator
Returns the boolean evaluated expression.
test(StaticVariableSet<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.ExpressionParameter
Runs the expression and returns the boolean result.
test(String, String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.NamedStringQueryExpression
Tests if the key value pair is queried
test(Path) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
Returns true if the query matches the string
test(Map<String, String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
Tests if the query matches the key value pairs
test(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringMapQueryExpression
Tests if the query matches the keys=values.
test(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
Returns true if the query matches the string
test(ResultsTableData, int, int) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.TableCellValueQueryExpression
Returns true if the table cell is accepted by the expression
test(String) - Method in class org.hkijena.jipipe.ui.components.SearchTextField
 
testAnyOf(Collection<Path>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.PathQueryExpression
Returns true of one of the strings matches the query.
testAnyOf(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.StringQueryExpression
Returns true of one of the strings matches the query.
TEXTAREA_BACKGROUND - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
ThrobberIcon - Class in org.hkijena.jipipe.ui.components
 
ThrobberIcon(Component, ImageIcon, int, double) - Constructor for class org.hkijena.jipipe.ui.components.ThrobberIcon
 
thumbMoved(int, float) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
thumbMoved(int, float) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
ThumbRenderer() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.ThumbRenderer
 
thumbSelected(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerLUTEditor
 
thumbSelected(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
tighten(PointRange, PointRange) - Static method in class org.hkijena.jipipe.utils.PointRange
Modifies the center points, so they are closer together.
TO_2D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules convert higher-dimensional data to their 2D counterparts
TO_3D_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules convert data to their 3D counterparts
TO_COLOR_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules that convert color types into colored images
TO_GRAYSCALE32F_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules that convert color types into colored images
TO_GRAYSCALE_CONVERSION - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules that convert color types into greyscale
ToBooleanFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ToBooleanFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToBooleanFunction
 
toDummySlot(JIPipeDataSlotInfo, JIPipeGraphNode, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Creates a new dummy slot that contains the data of one input slot and the annotations of this batch
toHtmlElement(JIPipeDependency) - Static method in interface org.hkijena.jipipe.JIPipeDependency
Exports the dependency to an HTML element (without the root tag)
toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
toJson(JsonGenerator) - Method in interface org.hkijena.jipipe.api.data.JIPipeSlotConfiguration
Saves this configuration to JSON.
toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.JIPipeProject
Writes the project to JSON
toJson(JsonGenerator) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Saves this algorithm to JSON.
ToJsonFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ToJsonFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToJsonFunction
 
toJsonString(Object) - Static method in class org.hkijena.jipipe.utils.JsonUtils
 
tokenize(String, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
tokenize(String) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
toMask(Margin, boolean, boolean, int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Generates a mask image from pure ROI data.
ToNumberFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ToNumberFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToNumberFunction
 
ToNumericColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Sorts the items ascending
ToNumericColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation
 
ToolsExtension - Class in org.hkijena.jipipe.extensions.tools
Extension containing some additional tools
ToolsExtension() - Constructor for class org.hkijena.jipipe.extensions.tools.ToolsExtension
 
TooltipUtils - Class in org.hkijena.jipipe.utils
Utilities that generate tooltips or other text from JIPipe data data structures
toParameterString(Object...) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts a list of parameters into a space-delimited
toPath() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
toPython() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts this table into its equivalent Python form (as dictionary of columns)
toString() - Method in class org.hkijena.jipipe.api.data.JIPipeAnnotation
 
toString() - Method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
 
toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
toString() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
 
toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
toString() - Method in exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata.List
 
toString() - Method in class org.hkijena.jipipe.api.JIPipeAuthorMetadata
 
toString() - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
toString() - Method in class org.hkijena.jipipe.api.JIPipeValidityReport.Message
 
toString() - Method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping
 
toString() - Method in class org.hkijena.jipipe.api.registries.JIPipeJavaNodeRegistrationTask
 
toString() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
toString() - Method in class org.hkijena.jipipe.extensions.filesystem.dataypes.PathData
 
toString() - Method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod
 
toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D
 
toString() - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor
 
toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.OMEImageData
 
toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
 
toString() - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension
 
toString() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
 
toString() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.ParametersData
 
toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMERODatasetReferenceData
 
toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROImageReferenceData
 
toString() - Method in class org.hkijena.jipipe.extensions.omero.datatypes.OMEROProjectReferenceData
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.functions.FunctionParameter
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.matrix.Matrix2D
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.optional.OptionalParameter
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.pairs.PairParameter
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeAlgorithmIconRef
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeDataInfoRef
 
toString() - Method in class org.hkijena.jipipe.extensions.parameters.references.JIPipeNodeInfoRef
 
toString() - Method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation
 
toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
 
toString() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotDataSeries
 
toString() - Method in class org.hkijena.jipipe.extensions.strings.StringData
 
toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
toString() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
toString() - Method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization
 
toString() - Method in class org.hkijena.jipipe.installer.linux.api.JIPipeRunnerSubStatus
 
toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Edge
 
toString() - Method in class org.hkijena.jipipe.ui.grapheditor.layout.MSTGraphAutoLayoutMethod.Node
 
toString() - Method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
 
toString() - Method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode
 
toString() - Method in class org.hkijena.jipipe.utils.MacroFlag
 
toString() - Method in class org.hkijena.jipipe.utils.MacroSetting
 
ToStringColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Sorts the items ascending
ToStringColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation
 
ToStringFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
ToStringFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.ToStringFunction
 
toUpdateSite() - Method in class org.hkijena.jipipe.JIPipeImageJUpdateSiteDependency
 
toValue(String, Object) - Method in class org.hkijena.jipipe.extensions.parameters.expressions.DefaultExpressionEvaluator
 
TrackRenderer(ImageViewerPanelDisplayRangeControl) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
TransformCrop2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformCrop2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
Instantiates a new node type.
TransformCrop2DAlgorithm(TransformCrop2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
Instantiates a new node type.
TransformEqualCanvasSize2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
TransformEqualCanvasSize2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
TransformEqualCanvasSize2DAlgorithm(TransformEqualCanvasSize2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformEqualCanvasSize2DAlgorithm
 
TransformExpandCanvas2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
TransformExpandCanvas2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
TransformExpandCanvas2DAlgorithm(TransformExpandCanvas2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformExpandCanvas2DAlgorithm
 
TransformFlip2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformFlip2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
Instantiates a new node type.
TransformFlip2DAlgorithm(TransformFlip2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm
Instantiates a new node type.
TransformFlip2DAlgorithm.FlipMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Available ways to flip an image
TransformRotate2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformRotate2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
Instantiates a new node type.
TransformRotate2DAlgorithm(TransformRotate2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm
Instantiates a new node type.
TransformRotate2DAlgorithm.RotationMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Available ways to flip an image
TransformRotateFree2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformRotateFree2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
Instantiates a new node type.
TransformRotateFree2DAlgorithm(TransformRotateFree2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotateFree2DAlgorithm
 
TransformScale2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformScale2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
Instantiates a new node type.
TransformScale2DAlgorithm(TransformScale2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale2DAlgorithm
Instantiates a new node type.
TransformScale3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
Wrapper around ImageProcessor
TransformScale3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
Instantiates a new node type.
TransformScale3DAlgorithm(TransformScale3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformScale3DAlgorithm
Instantiates a new node type.
TRANSPARENT - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.ModernMetalTheme
 
TRANSPARENT - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
TRANSPARENT - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
traverse() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Traverses the graph in topological order.
traverseSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Traverses the graph in topological order.
tryAutoRun(boolean, JIPipeTestBenchSettings, Consumer<JIPipeTestBench>) - Method in class org.hkijena.jipipe.ui.grapheditor.settings.JIPipeTestBenchSetupUI
Attempts to setup and run the quick run automatically and run a function when finished
tryDequeue() - Method in class org.hkijena.jipipe.installer.linux.ui.utils.JIPipeRunnerQueue
Attempts to run a scheduled run
tryDequeue() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Attempts to run a scheduled run
tryGetIntegers() - Method in class org.hkijena.jipipe.extensions.parameters.generators.IntegerRange
Generates the list of integers based on the value.
trySetInputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Sets the input slot order.
trySetOutputSlotOrder(List<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Sets the output slot order.

U

UI_PADDING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
 
UI_PADDING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
 
UI_PADDING - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
uiImportParameterFromGraph(JIPipeWorkbench) - Method in class org.hkijena.jipipe.extensions.multiparameters.datasources.GeneratedParameters
 
UIPlotDataSeriesColumnEnum - Class in org.hkijena.jipipe.extensions.plots.parameters
Parameter that contains one selected PlotDataSeries item.
UIPlotDataSeriesColumnEnum() - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnum
 
UIPlotDataSeriesColumnEnumParameterEditorUI - Class in org.hkijena.jipipe.extensions.plots.parameters
Works for TableColumn.
UIPlotDataSeriesColumnEnumParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.plots.parameters.UIPlotDataSeriesColumnEnumParameterEditorUI
 
UIUtils - Class in org.hkijena.jipipe.installer.linux.ui.utils
Utils for UI
UIUtils() - Constructor for class org.hkijena.jipipe.installer.linux.ui.utils.UIUtils
 
UIUtils - Class in org.hkijena.jipipe.utils
Utils for UI
UIUtils() - Constructor for class org.hkijena.jipipe.utils.UIUtils
 
UltimateErodedPoints2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
Wrapper around EDM
UltimateErodedPoints2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm
Instantiates a new node type.
UltimateErodedPoints2DAlgorithm(UltimateErodedPoints2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.UltimateErodedPoints2DAlgorithm
Instantiates a new node type.
UndefinedExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions.variables
Used to indicate that the list of variables are not known
UndefinedExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.variables.UndefinedExpressionParameterVariableSource
 
undo() - Method in class org.hkijena.jipipe.api.history.AddCompartmentGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.AddNodeGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.CompoundGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.DeleteCompartmentGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.EdgeConnectGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectAllTargetsGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.EdgeDisconnectGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.GraphChangedHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.ImportCompartmentGraphHistorySnapshot
 
undo() - Method in interface org.hkijena.jipipe.api.history.JIPipeAlgorithmGraphHistorySnapshot
Reverts the operation
undo() - Method in class org.hkijena.jipipe.api.history.JIPipeGraphHistory
Reverts the last operation
undo() - Method in class org.hkijena.jipipe.api.history.MoveNodesGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.RemoveNodeGraphHistorySnapshot
 
undo() - Method in class org.hkijena.jipipe.api.history.SlotConfigurationHistorySnapshot
 
unpackToNodeGroup(JsonAlgorithm) - Static method in class org.hkijena.jipipe.api.grouping.JsonAlgorithm
Replaces the targeted JsonAlgorithm by a NodeGroup
UnreferencedRoiToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
UnreferencedRoiToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
Instantiates a new node type.
UnreferencedRoiToMaskAlgorithm(UnreferencedRoiToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToMaskAlgorithm
Instantiates a new node type.
UnreferencedRoiToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
UnreferencedRoiToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
Instantiates a new node type.
UnreferencedRoiToRGBAlgorithm(UnreferencedRoiToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnreferencedRoiToRGBAlgorithm
Instantiates a new node type.
unregister(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeNodeRegistry
Removes a node from the registry
UnsatisfiedDependenciesDialog - Class in org.hkijena.jipipe.ui.project
Shown when unsatisfied dependencies are found
UnsatisfiedDependenciesDialog(JIPipeWorkbench, Path, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Constructor for class org.hkijena.jipipe.ui.project.UnsatisfiedDependenciesDialog
 
UnsetRoiImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
Wrapper around RoiManager
UnsetRoiImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm
Instantiates a new node type.
UnsetRoiImageAlgorithm(UnsetRoiImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.UnsetRoiImageAlgorithm
Instantiates a new node type.
unzip(Path, Path, JIPipeRunnerSubStatus, Consumer<JIPipeRunnerSubStatus>) - Static method in class org.hkijena.jipipe.installer.linux.api.ZipUtils
 
update(IObservable, ImportEvent) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROUploadToJIPipeLogger
 
update(Graphics, JComponent) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Called when the algorithm was enabled/disabled
updateActivationStatus() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Updates the slots
updateAlgorithmSlotUIs() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
updateAnalyzer() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
Sends the settings to Analyzer
UpdateCacheNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.contextmenu
 
UpdateCacheNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.contextmenu.UpdateCacheNodeUIContextAction
 
updateChartProperties(JFreeChart) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Sets properties of charts
updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
updateConflictList() - Method in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
updateConflictsMessage() - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
updateFont() - Method in class org.hkijena.jipipe.ui.components.ZoomLabel
 
updateGraphNodeSlots() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Synchronizes the slots with the slot definition
updateGroupSlots() - Method in class org.hkijena.jipipe.api.grouping.GraphWrapperAlgorithm
Updates the slots from the wrapped graph
updateMappings() - Method in class org.hkijena.jipipe.ui.ijupdater.FileTableModel
 
updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Called when the algorithm name was updated
updateName() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
updateNavigation() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
Updates the navigation list
updateRegistrationTasks() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionLoaderExtension
Tries to register more extensions waiting for dependencies
updateRenderedPreviews() - Method in class org.hkijena.jipipe.api.data.JIPipeMergedDataSlotTable
 
updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.DataSlotTableModel
 
updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataMergedTableCellRenderer
 
updateRenderedPreviews() - Method in class org.hkijena.jipipe.ui.resultanalysis.JIPipeRowDataTableCellRenderer
 
updateSelection() - Method in class org.hkijena.jipipe.ui.compartments.JIPipeCompartmentGraphUI
 
updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter
 
updateSelection() - Method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExtensionGraphUI
 
updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCompartmentUI
 
updateSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphEditorUI
 
updateSeriesList() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Updates the column parameters
UpdateSiteListUI - Class in org.hkijena.jipipe.ui.ijupdater
 
UpdateSiteListUI(JIPipeImageJPluginManager) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteListUI
 
UpdateSiteListUI.Ranking - Class in org.hkijena.jipipe.ui.ijupdater
 
UpdateSiteUI - Class in org.hkijena.jipipe.ui.ijupdater
 
UpdateSiteUI(UpdateSiteListUI, UpdateSite) - Constructor for class org.hkijena.jipipe.ui.ijupdater.UpdateSiteUI
 
updateSize() - Method in class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeHorizontalNodeUI
 
updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeNodeUI
Recalculates the UI size
updateSize() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeVerticalNodeUI
 
updateSliders() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl
 
updateSlotInheritance() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Updates the inheritance: Passes traits from input slots to output slots while modifying the results depending on the trait configuration.
updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.InputSlotMapParameterCollection
 
updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.OutputSlotMapParameterCollection
 
updateSlots() - Method in class org.hkijena.jipipe.extensions.parameters.collections.SlotMapParameterCollection
Method that adds missing entries, or removes invalid entries based on the algorithm's slot configuration
updateStatus() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheManagerUI
Updates the UI status
updateStatus() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueueUI
Updates the UI status
UploadOMEROImageAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms
 
UploadOMEROImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROImageAlgorithm
 
UploadOMEROTableAlgorithm - Class in org.hkijena.jipipe.extensions.omero.algorithms
 
UploadOMEROTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm
 
UploadOMEROTableAlgorithm(UploadOMEROTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.algorithms.UploadOMEROTableAlgorithm
 
uploadSliceToCanvas() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanel
 
userCanCreate() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
userCanCreate() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
userCanCreate() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns if nodes of this category can be created by users
userCanDelete() - Method in class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
userCanDelete() - Method in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
userCanDelete() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns if nodes of this category can be deleted by users
UserFriendlyErrorUI - Class in org.hkijena.jipipe.ui.components
Displays exceptions in a user-friendly way.
UserFriendlyErrorUI(MarkdownDocument, int) - Constructor for class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
 
UserFriendlyErrorUI.Entry - Class in org.hkijena.jipipe.ui.components
Entry to be displayed
UserFriendlyErrorUI.EntryUI - Class in org.hkijena.jipipe.ui.components
UserFriendlyException - Interface in org.hkijena.jipipe.api.exceptions
Error/Exception that contains user-friendly information
UserFriendlyNullPointerException - Exception in org.hkijena.jipipe.api.exceptions
A RuntimeException that contains more detailed information for users.
UserFriendlyNullPointerException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyNullPointerException
 
UserFriendlyRuntimeException - Exception in org.hkijena.jipipe.api.exceptions
A RuntimeException that contains more detailed information for users.
UserFriendlyRuntimeException(String, Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
UserFriendlyRuntimeException(String, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
UserFriendlyRuntimeException(Throwable, String, String, String, String) - Constructor for exception org.hkijena.jipipe.api.exceptions.UserFriendlyRuntimeException
 
UserParameterDefinition(JIPipeDynamicParameterCollection, String, Class<?>) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.UserParameterDefinition
 
UtilitiesExtension - Class in org.hkijena.jipipe.extensions.utils
 
UtilitiesExtension() - Constructor for class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
 

V

validatePlugins(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Validates the plugins
validateProject(boolean) - Method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
Validates the project
value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
value() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.JIPipeGraphType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm.DimensionOperation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.DisplayRangeStop
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.IOMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.PathMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.hkijena.jipipe.utils.ListSelectionMode
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeAnnotationMergeStrategy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.data.JIPipeSlotType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.JIPipeGraphType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.JIPipeValidityReport.Response
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.nodes.JIPipeColumnGrouping
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterPersistence
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.api.parameters.JIPipeParameterVisibility
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.ijmultitemplatematching.TemplateMatchingMethod
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.BackgroundType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.background.RollingBallBackgroundEstimator2DAlgorithm.Method
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.MergeChannelsAlgorithm.ChannelColor
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm.Method
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.EigenvalueSelection2D
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.FrangiVesselnessFeatures.SlicingMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.features.LocalMaxima2DAlgorithm.OutputType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.InterpolationMethod
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm.Transformation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm.Transformation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operand
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ImageCalculator2DAlgorithm.Operation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.morphology.MorphologyBinary2DAlgorithm.Operation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.Neighborhood2D
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.RemoveOutliersFilter2DAlgorithm.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.SplitRoiConnectedComponentsAlgorithm.DimensionOperation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Anchor
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.TableToRectangularROIAlgorithm.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.HistogramGenerator.MultiChannelMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformFlip2DAlgorithm.FlipMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformRotate2DAlgorithm.RotationMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMEColorMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.parameters.OMETIFFCompression
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.AVICompression
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.HyperstackDimension
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.Measurement
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementColumn
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiOutline
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerPanelDisplayRangeControl.DisplayRangeStop
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.colors.ColorMap
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.expressions.ExpressionBuilderParameterUI.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.patterns.StringPatternExtraction.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.primitives.StringOrDouble.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.roi.Anchor
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.LogicalOperation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.parameters.util.SortOrder
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.plots.datatypes.HistogramPlotData.HistogramType_
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.plots.utils.ColorMap
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.tables.ColumnContentType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.extensions.tables.datatypes.TableColumnNormalization
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.IOMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.installer.linux.ui.utils.PathEditor.PathMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.DocumentTabPane.CloseMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeDataTypePicker.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.JIPipeNodeInfoPicker.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.MessagePanel.MessageType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.IOMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.components.PathEditor.PathMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.extension.MenuTarget
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.JIPipeGraphViewMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.grapheditor.layout.GraphAutoLayout
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.ui.theme.JIPipeUITheme
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.utils.ImageJCalibrationMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.hkijena.jipipe.utils.ListSelectionMode
Returns an array containing the constants of this enum type, in the order they are declared.
VARIABLE_ABSPATH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
VARIABLE_NAME - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
VARIABLE_PARENT - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
VARIABLE_PATH - Static variable in class org.hkijena.jipipe.extensions.parameters.expressions.variables.PathFilterExpressionParameterVariableSource
 
VariableExistsFunction - Class in org.hkijena.jipipe.extensions.parameters.expressions.functions
 
VariableExistsFunction() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.functions.VariableExistsFunction
 
VariableExistsOperator - Class in org.hkijena.jipipe.extensions.parameters.expressions.operators
 
VariableExistsOperator() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.operators.VariableExistsOperator
 
VARIABLES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiOverlapStatisticsVariableSource
 
VARIABLES - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.MeasurementExpressionParameterVariableSource
 
VariableSelectorList - Class in org.hkijena.jipipe.extensions.parameters.expressions
Panel that allows the user to select an ExpressionFunction
VariableSelectorList(Set<ExpressionParameterVariable>) - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.VariableSelectorList
 
VariableSelectorList.ExpressionVariableRenderer - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
vertexAdded(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
vertexRemoved(GraphVertexChangeEvent<V>) - Method in class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
VirtualDataControl - Class in org.hkijena.jipipe.ui.data
A tool that automatically runs 'update cache' when any parameter or graph property is changed
VirtualDataControl(JIPipeProjectWorkbench) - Constructor for class org.hkijena.jipipe.ui.data.VirtualDataControl
 
VirtualDataSettings - Class in org.hkijena.jipipe.extensions.settings
 
VirtualDataSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.VirtualDataSettings
 
Voronoi2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
Wrapper around EDM
Voronoi2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm
Instantiates a new node type.
Voronoi2DAlgorithm(Voronoi2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.Voronoi2DAlgorithm
Instantiates a new node type.

W

walkInternalResourceFolder(String) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.ResourceUtils
Iterates through all internal resources and
walkInternalResourceFolder(String) - Static method in class org.hkijena.jipipe.utils.ResourceUtils
Iterates through all internal resources and
warn(Object, String) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
warn(Object, LogMessage) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROToJIPipeLogger
 
wasCanceled - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
WeakPredecessorInspector<V,E> - Class in org.hkijena.jipipe.utils
Calculates the predecessor set of a vertex
WeakPredecessorInspector(Graph<V, E>) - Constructor for class org.hkijena.jipipe.utils.WeakPredecessorInspector
 
WebUtils - Class in org.hkijena.jipipe.installer.linux.api
 
WebUtils() - Constructor for class org.hkijena.jipipe.installer.linux.api.WebUtils
 
WebUtils - Class in org.hkijena.jipipe.utils
 
WebUtils() - Constructor for class org.hkijena.jipipe.utils.WebUtils
 
windowActivated(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
windowClosed(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
WindowClosedEvent - Class in org.hkijena.jipipe.ui.events
Triggered when a JIPipe window was closed
WindowClosedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowClosedEvent
 
windowClosing(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
windowDeactivated(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
windowDeiconified(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
windowIconified(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
WindowListCellRenderer<T extends Frame> - Class in org.hkijena.jipipe.ui.components
 
WindowListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.components.WindowListCellRenderer
 
windowOpened(WindowEvent) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.viewer.ImageViewerWindow
 
WindowOpenedEvent - Class in org.hkijena.jipipe.ui.events
Triggered when a window was opened
WindowOpenedEvent(Window) - Constructor for class org.hkijena.jipipe.ui.events.WindowOpenedEvent
 
WindowQueryExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.parameters.expressions
 
WindowQueryExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.parameters.expressions.WindowQueryExpressionParameterVariableSource
 
WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
WINDOWS_EVENTS - Static variable in class org.hkijena.jipipe.ui.JIPipeProjectWindow
 
WindowWatcher() - Constructor for class org.hkijena.jipipe.JIPipeLauncher.WindowWatcher
 
WITH_DOCUMENTATION - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Flag that indicates that a documentation panel is shown.
WITH_DOCUMENTATION - Static variable in class org.hkijena.jipipe.ui.components.FormPanel
Flag that indicates that a documentation panel is shown.
WITH_INFINITE_SCROLLING - Static variable in class org.hkijena.jipipe.ui.components.FormPanel
Flag that items should only be displayed when necessary
WITH_SCROLLING - Static variable in class org.hkijena.jipipe.installer.linux.ui.utils.FormPanel
Flag that makes the content be wrapped in a JScrollPane
WITH_SCROLLING - Static variable in class org.hkijena.jipipe.ui.components.FormPanel
Flag that makes the content be wrapped in a JScrollPane
WITH_SEARCH_BAR - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel
With this flag, there will be a search bar for parameters.
WITHOUT_LABEL_SEPARATION - Static variable in class org.hkijena.jipipe.ui.parameters.ParameterPanel
With this flag, parameters that do not show a label are not put below anymore
withoutInput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Disables input
withoutOutput() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Disables output
wordWrappedHTML(String, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Create word wrapping in HTML.
wordWrappedHTML(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils
Create word wrapping in HTML.
wordWrappedHTMLElement(String, int) - Static method in class org.hkijena.jipipe.installer.linux.ui.utils.StringUtils
Create word wrapping in HTML.
wordWrappedHTMLElement(String, int) - Static method in class org.hkijena.jipipe.utils.StringUtils
Create word wrapping in HTML.
WorkDirectoryChangedEvent(Path) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.WorkDirectoryChangedEvent
 
WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataSlotTableUI.WrapperColumnHeaderRenderer
Creates a new instance
WrapperColumnHeaderRenderer(JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.cache.JIPipeCacheDataSlotTableUI.WrapperColumnHeaderRenderer
Creates a new instance
writeImage(BufferedImage, String) - Static method in class org.hkijena.jipipe.utils.ScreenImage
Write a BufferedImage to a File.
writeToFolder(List<JIPipeDataSlot>, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Writes data to the specified folder
writeToFolder(JIPipeDataSlot, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Writes data to the specified folder
writeToFolder(JIPipeDataSlot, Path, JIPipeProgressInfo, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Writes data to the specified folder
writeToFolder(JIPipeDataSlot, int, Path, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Writes data to the specified folder
writeToFolder(JIPipeDataSlot, int, Path, JIPipeProgressInfo, Set<String>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataByMetadataExporter
Writes data to the specified folder

X

XMLData - Class in org.hkijena.jipipe.extensions.strings
 
XMLData(String) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData
 
XMLData(StringData) - Constructor for class org.hkijena.jipipe.extensions.strings.XMLData
 
XYPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for XY plots Any plot has following columns: X (Double), Y (Double)
XYPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
Creates a new instance
XYPlotData(XYPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
Creates a copy

Z

ZeroTableColumn - Class in org.hkijena.jipipe.extensions.tables.datatypes
Generates numbers from 0 to row count
ZeroTableColumn() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.ZeroTableColumn
 
ZipUtils - Class in org.hkijena.jipipe.installer.linux.api
 
ZipUtils() - Constructor for class org.hkijena.jipipe.installer.linux.api.ZipUtils
 
zoom(double) - Method in class org.hkijena.jipipe.utils.PointRange
Apply scaling to all components and return the result.
ZoomChangedEvent(ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomViewPort.ZoomChangedEvent
 
ZoomFlatIconButton - Class in org.hkijena.jipipe.ui.components
Flat JButton that zooms and displays a zoomable icon
ZoomFlatIconButton(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomFlatIconButton
 
ZoomIcon - Class in org.hkijena.jipipe.ui.components
Icon that adapts to the zoom level of a ZoomViewPort
ZoomIcon(ImageIcon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomIcon
 
zoomIn() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
ZoomLabel - Class in org.hkijena.jipipe.ui.components
JLabel that changes its font based on the ZoomViewPort zoom level
ZoomLabel(String, Icon, ZoomViewPort) - Constructor for class org.hkijena.jipipe.ui.components.ZoomLabel
 
zoomOut() - Method in class org.hkijena.jipipe.ui.grapheditor.JIPipeGraphCanvasUI
 
ZoomViewPort - Interface in org.hkijena.jipipe.ui.components
 
ZoomViewPort.ZoomChangedEvent - Class in org.hkijena.jipipe.ui.components
Triggered by ZoomViewPort when the zoom was changed
ZProjectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ZProjector
ZProjectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
Instantiates a new node type.
ZProjectorAlgorithm(ZProjectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.ZProjectorAlgorithm
Instantiates a new node type.
ZProjectorAlgorithm.Method - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Available transformation functions
A B C D E F G H I J K L M N O P Q R S T U V W X Z 
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